[med-svn] [Git][med-team/patman][master] 4 commits: Add data for autopkgtests

[Shruti Sridhar]

Shruti Sridhar pushed to branch master at Debian Med / patman


Commits:
290450a1 by Shruti Sridhar at 2020-09-20T23:43:45+05:30
Add data for autopkgtests

- - - - -
229294a1 by Shruti Sridhar at 2020-09-20T23:44:25+05:30
Add autopkgtests

- - - - -
b68fdf60 by Shruti Sridhar at 2020-09-20T23:45:13+05:30
Install examples and docs

- - - - -
a1b9776a by Shruti Sridhar at 2020-09-20T23:57:11+05:30
Update changelog

- - - - -


8 changed files:

- + debian/README.test
- debian/changelog
- debian/docs
- + debian/examples
- + debian/tests/control
- + debian/tests/data/database
- + debian/tests/data/fasta
- + debian/tests/run-unit-test


Changes:

=====================================
debian/README.test
=====================================
@@ -0,0 +1,14 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by running the provided test:
+
+    sh run-unit-test
+
+in order to confirm its integrity.
+
+Notes on the files used for testing 
+────────────────────────────────────────
+Files: debian/tests/data/*
+Source: https://www.ncbi.nlm.nih.gov/nuccore/NC_045512.2?report=fasta
+


=====================================
debian/changelog
=====================================
@@ -1,3 +1,15 @@
+patman (1.2.2+dfsg-7) UNRELEASED; urgency=medium
+
+  [ Steffen Moeller ]
+  * d/u/metadata: yamllint
+
+  [ Shruti Sridhar ]
+  * Add data for autopkgtests
+  * Add autopkgtests
+  * Install examples and docs
+
+ -- Shruti Sridhar <shruti.sridhar99 at gmail.com>  Sun, 20 Sep 2020 23:54:59 +0530
+
 patman (1.2.2+dfsg-6) unstable; urgency=medium
 
   [ Helmut Grohne ]


=====================================
debian/docs
=====================================
@@ -1 +1,2 @@
 README
+debian/README*
\ No newline at end of file


=====================================
debian/examples
=====================================
@@ -0,0 +1 @@
+debian/tests/data/*
\ No newline at end of file


=====================================
debian/tests/control
=====================================
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr


=====================================
debian/tests/data/database
=====================================
@@ -0,0 +1,24 @@
+>NC_045512.2 Severe acute respiratory syndrome coronavirus 2 isolate Wuhan-Hu-1,first 23 lines 
+ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAA
+CGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAAC
+TAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTG
+TTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTC
+CCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTGCTCGTAC
+GTGGCTTTGGAGACTCCGTGGAGGAGGTCTTATCAGAGGCACGTCAACATCTTAAAGATGGCACTTGTGG
+CTTAGTAGAAGTTGAAAAAGGCGTTTTGCCTCAACTTGAACAGCCCTATGTGTTCATCAAACGTTCGGAT
+GCTCGAACTGCACCTCATGGTCATGTTATGGTTGAGCTGGTAGCAGAACTCGAAGGCATTCAGTACGGTC
+GTAGTGGTGAGACACTTGGTGTCCTTGTCCCTCATGTGGGCGAAATACCAGTGGCTTACCGCAAGGTTCT
+TCTTCGTAAGAACGGTAATAAAGGAGCTGGTGGCCATAGTTACGGCGCCGATCTAAAGTCATTTGACTTA
+GGCGACGAGCTTGGCACTGATCCTTATGAAGATTTTCAAGAAAACTGGAACACTAAACATAGCAGTGGTG
+TTACCCGTGAACTCATGCGTGAGCTTAACGGAGGGGCATACACTCGCTATGTCGATAACAACTTCTGTGG
+CCCTGATGGCTACCCTCTTGAGTGCATTAAAGACCTTCTAGCACGTGCTGGTAAAGCTTCATGCACTTTG
+TCCGAACAACTGGACTTTATTGACACTAAGAGGGGTGTATACTGCTGCCGTGAACATGAGCATGAAATTG
+CTTGGTACACGGAACGTTCTGAAAAGAGCTATGAATTGCAGACACCTTTTGAAATTAAATTGGCAAAGAA
+ATTTGACACCTTCAATGGGGAATGTCCAAATTTTGTATTTCCCTTAAATTCCATAATCAAGACTATTCAA
+CCAAGGGTTGAAAAGAAAAAGCTTGATGGCTTTATGGGTAGAATTCGATCTGTCTATCCAGTTGCGTCAC
+CAAATGAATGCAACCAAATGTGCCTTTCAACTCTCATGAAGTGTGATCATTGTGGTGAAACTTCATGGCA
+GACGGGCGATTTTGTTAAAGCCACTTGCGAATTTTGTGGCACTGAGAATTTGACTAAAGAAGGTGCCACT
+ACTTGTGGTTACTTACCCCAAAATGCTGTTGTTAAAATTTATTGTCCAGCATGTCACAATTCAGAAGTAG
+GACCTGAGCATAGTCTTGCCGAATACCATAATGAATCTGGCTTGAAAACCATTCTTCGTAAGGGTGGTCG
+CACTATTGCCTTTGGAGGCTGTGTGTTCTCTTATGTTGGTTGCCATAACAAGTGTGCCTATTGGGTTCCA
+CGTGCTAGCGCTAACATAGGTTGTAACCATACAGGTGTTGTTGGAGAAGGTTCCGAAGGTCTTAATGACA


=====================================
debian/tests/data/fasta
=====================================
@@ -0,0 +1,2 @@
+>NC_045512.2_substring
+GTCCAACTCAGTTTGCCTGTTTTACAGGT


=====================================
debian/tests/run-unit-test
=====================================
@@ -0,0 +1,23 @@
+#!/bin/bash
+set -e
+
+pkg=patman
+
+export LC_ALL=C.UTF-8
+if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
+  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
+  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
+
+cd "${AUTOPKGTEST_TMP}"
+
+#do_stuff_to_test_package#
+
+patman -P fasta -D database -o output -v
+
+echo "d9ae09a7726e3318af0de3200b8e6247  output" >> checksums
+
+md5sum --check checksums
+



View it on GitLab: https://salsa.debian.org/med-team/patman/-/compare/68578247aa2f2e963a9c2784a4c3e9e0d0f5af1e...a1b9776af16c4d913fb24211a3a6579aeee23d02

-- 
View it on GitLab: https://salsa.debian.org/med-team/patman/-/compare/68578247aa2f2e963a9c2784a4c3e9e0d0f5af1e...a1b9776af16c4d913fb24211a3a6579aeee23d02
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