Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
a8351f5a by Andreas Tille at 2020-09-24T13:45:02+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,158 +1,159 @@
-Last-Update: Thu, 24 Sep 2020 01:42:03 +0000
+Last-Update: Thu, 24 Sep 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 160 | {imaging,covid-19} |
- orthanc | 91 | {practice,covid-19,imaging} |
- orthanc-wsi | 48 | {his,laboratory,covid-19,imaging,practice,oncology} |
- gdcm | 38 | {imaging-dev} |
+ dcmtk | 162 | {imaging,covid-19} |
+ orthanc | 87 | {practice,covid-19,imaging} |
+ orthanc-wsi | 46 | {his,laboratory,covid-19,imaging,practice,oncology} |
+ gdcm | 40 | {imaging-dev} |
htsjdk | 28 | {bio-dev} |
- dicom3tools | 26 | {imaging} |
+ dicom3tools | 25 | {imaging} |
dicomscope | 25 | {imaging} |
gnumed-server | 19 | {covid-19,practice} |
- dcm2niix | 14 | {imaging} |
- gdcm | 14 | {covid-19,imaging} |
- adun.app | 13 | {bio} |
- ngs-sdk | 13 | {bio-dev} |
- gdcm | 12 | {imaging-dev} |
- minc-tools | 12 | {imaging} |
- invesalius | 11 | {imaging} |
- pixelmed | 11 | {imaging} |
+ dcm2niix | 15 | {imaging} |
+ adun.app | 14 | {bio} |
+ ngs-sdk | 14 | {bio-dev} |
+ gdcm | 13 | {covid-19,imaging} |
+ gdcm | 13 | {imaging-dev} |
+ invesalius | 12 | {imaging} |
+ minc-tools | 11 | {imaging} |
dicompyler | 10 | {oncology} |
+ melting | 10 | {cloud,bio} |
+ nifticlib | 10 | {imaging-dev} |
nifticlib | 10 | {imaging} |
- melting | 9 | {cloud,bio} |
- openslide | 9 | {imaging} |
- ea-utils | 8 | {bio} |
+ pixelmed | 10 | {imaging} |
+ ea-utils | 9 | {bio} |
+ insighttoolkit4 | 9 | {imaging-dev} |
+ libncl | 9 | {bio} |
+ biosig4c++ | 8 | {physics,imaging} |
+ fastlink | 8 | {bio,cloud} |
king | 8 | {typesetting,imaging} |
- libncl | 8 | {bio} |
- multiqc | 8 | {bio,covid-19} |
- ngs-sdk | 8 | {bio-dev} |
- nifticlib | 8 | {imaging-dev} |
- orthanc-webviewer | 8 | {imaging} |
+ librg-utils-perl | 8 | {bio} |
+ openslide | 8 | {imaging} |
plastimatch | 8 | {imaging} |
salmon | 8 | {covid-19,bio} |
staden | 8 | {bio} |
- biosig4c++ | 7 | {physics,imaging} |
- fastlink | 7 | {bio,cloud} |
- librg-utils-perl | 7 | {bio} |
- treeview | 7 | {bio,bio-phylogeny} |
- vtk-dicom | 7 | {imaging} |
- anfo | 6 | {cloud,bio} |
- biojava-live | 6 | {bio-dev} |
- embassy-domalign | 6 | {cloud,bio} |
- embassy-domsearch | 6 | {cloud,bio} |
- insighttoolkit4 | 6 | {imaging-dev} |
- jebl2 | 6 | {bio-dev} |
- libdivsufsort | 6 | {bio-dev} |
- mipe | 6 | {cloud,bio} |
+ treeview | 8 | {bio,bio-phylogeny} |
+ anfo | 7 | {cloud,bio} |
+ biojava-live | 7 | {bio-dev} |
+ embassy-domalign | 7 | {cloud,bio} |
+ embassy-domsearch | 7 | {cloud,bio} |
+ jebl2 | 7 | {bio-dev} |
+ mipe | 7 | {cloud,bio} |
+ multiqc | 7 | {bio,covid-19} |
+ ngs-sdk | 7 | {bio-dev} |
+ orthanc-webviewer | 7 | {imaging} |
+ phyutility | 7 | {bio,cloud} |
+ saint | 7 | {bio} |
+ sibsim4 | 7 | {bio,cloud} |
+ bart-view | 6 | {imaging} |
+ embassy-domainatrix | 6 | {cloud,bio} |
+ fastml | 6 | {bio} |
+ fsm-lite | 6 | {bio} |
+ gatb-core | 6 | {bio} |
+ ipig | 6 | {bio} |
+ jellyfish1 | 6 | {bio} |
+ mhap | 6 | {bio-ngs,bio} |
+ neobio | 6 | {cloud,bio} |
+ nutsqlite | 6 | {tools} |
obitools | 6 | {bio} |
- phyutility | 6 | {bio,cloud} |
- saint | 6 | {bio} |
- sibsim4 | 6 | {bio,cloud} |
+ paraclu | 6 | {bio,cloud} |
+ perm | 6 | {cloud,bio} |
+ phast | 6 | {bio} |
+ piler | 6 | {bio} |
+ radiant | 6 | {bio} |
+ sprai | 6 | {bio} |
+ spread-phy | 6 | {bio-phylogeny,bio} |
stacks | 6 | {bio} |
- bart-view | 5 | {imaging} |
- embassy-domainatrix | 5 | {cloud,bio} |
- fastml | 5 | {bio} |
- fsm-lite | 5 | {bio} |
- gatb-core | 5 | {bio} |
- ipig | 5 | {bio} |
- jellyfish1 | 5 | {bio} |
+ vtk-dicom | 6 | {imaging} |
+ alter-sequence-alignment | 5 | {bio} |
+ arden | 5 | {cloud,bio} |
+ assemblytics | 5 | {bio} |
+ beast-mcmc | 5 | {bio,bio-phylogeny} |
+ bitseq | 5 | {bio} |
+ clonalorigin | 5 | {bio} |
+ dindel | 5 | {bio} |
+ ecopcr | 5 | {bio} |
+ elastix | 5 | {imaging} |
+ jmodeltest | 5 | {bio-phylogeny,bio} |
+ lagan | 5 | {bio} |
+ lamarc | 5 | {bio} |
+ libdivsufsort | 5 | {bio-dev} |
+ libpal-java | 5 | {bio-dev} |
+ librdp-taxonomy-tree-java | 5 | {bio-dev} |
mauve-aligner | 5 | {bio} |
- neobio | 5 | {cloud,bio} |
- nutsqlite | 5 | {tools} |
- orthanc-dicomweb | 5 | {covid-19,imaging} |
- paraclu | 5 | {bio,cloud} |
- perm | 5 | {cloud,bio} |
- phast | 5 | {bio} |
- piler | 5 | {bio} |
+ metaphlan2 | 5 | {bio} |
+ microbegps | 5 | {bio} |
+ phybin | 5 | {bio} |
+ placnet | 5 | {bio} |
+ prime-phylo | 5 | {cloud,bio} |
+ proalign | 5 | {bio,bio-phylogeny} |
+ pscan-chip | 5 | {bio} |
pymia | 5 | {imaging-dev} |
- radiant | 5 | {bio} |
- sprai | 5 | {bio} |
- spread-phy | 5 | {bio-phylogeny,bio} |
- alter-sequence-alignment | 4 | {bio} |
- arden | 4 | {cloud,bio} |
- assemblytics | 4 | {bio} |
- beast-mcmc | 4 | {bio,bio-phylogeny} |
- bitseq | 4 | {bio} |
+ quorum | 5 | {bio} |
+ rdp-classifier | 5 | {bio} |
+ rtax | 5 | {cloud,bio} |
+ scrm | 5 | {bio} |
+ spaced | 5 | {bio} |
+ suitename | 5 | {bio} |
+ tracetuner | 5 | {bio} |
+ zalign | 5 | {cloud,bio} |
+ blasr | 4 | {bio-ngs,bio} |
+ brig | 4 | {bio} |
busco | 4 | {bio,covid-19} |
- clonalorigin | 4 | {bio} |
- dindel | 4 | {bio} |
- ecopcr | 4 | {bio} |
- jmodeltest | 4 | {bio-phylogeny,bio} |
- lagan | 4 | {bio} |
- lamarc | 4 | {bio} |
- libpal-java | 4 | {bio-dev} |
- librdp-taxonomy-tree-java | 4 | {bio-dev} |
- metaphlan2 | 4 | {bio} |
- mhap | 4 | {bio-ngs,bio} |
- microbegps | 4 | {bio} |
- orthanc-postgresql | 4 | {imaging} |
- phybin | 4 | {bio} |
- placnet | 4 | {bio} |
+ clonalframeml | 4 | {bio,covid-19} |
+ estscan | 4 | {bio} |
+ ghmm | 4 | {bio} |
+ hinge | 4 | {bio} |
+ libminc | 4 | {imaging-dev} |
+ logol | 4 | {bio} |
+ murasaki | 4 | {bio} |
+ orthanc-dicomweb | 4 | {covid-19,imaging} |
predictprotein | 4 | {bio} |
- prime-phylo | 4 | {cloud,bio} |
- proalign | 4 | {bio,bio-phylogeny} |
- pscan-chip | 4 | {bio} |
- quorum | 4 | {bio} |
+ prottest | 4 | {bio,bio-phylogeny} |
+ rambo-k | 4 | {bio} |
rdp-alignment | 4 | {bio} |
- rdp-classifier | 4 | {bio} |
- rtax | 4 | {cloud,bio} |
- scrm | 4 | {bio} |
- spaced | 4 | {bio} |
- suitename | 4 | {bio} |
- tracetuner | 4 | {bio} |
- zalign | 4 | {cloud,bio} |
+ runcircos-gui | 4 | {bio} |
+ samblaster | 4 | {covid-19,bio} |
+ segemehl | 4 | {bio} |
+ sga | 4 | {bio} |
+ soapaligner | 4 | {bio} |
+ soapsnp | 4 | {bio} |
+ surankco | 4 | {bio} |
+ velvetoptimiser | 4 | {bio} |
+ yaha | 4 | {bio} |
+ beast2-mcmc | 3 | {bio} |
biomaj3-cli | 3 | {cloud} |
biomaj3-daemon | 3 | {bio} |
bio-tradis | 3 | {bio,bio-dev} |
- blasr | 3 | {bio-ngs,bio} |
- brig | 3 | {bio} |
- clonalframeml | 3 | {bio,covid-19} |
- elastix | 3 | {imaging} |
- estscan | 3 | {bio} |
- ghmm | 3 | {bio} |
- hinge | 3 | {bio} |
- libminc | 3 | {imaging-dev} |
- logol | 3 | {bio} |
+ delly | 3 | {covid-19,bio} |
+ getdata | 3 | {bio} |
mrs | 3 | {bio} |
- murasaki | 3 | {bio} |
- orthanc-mysql | 3 | {imaging} |
+ orthanc-postgresql | 3 | {imaging} |
oscar | 3 | {data,practice,tools} |
- prottest | 3 | {bio,bio-phylogeny} |
- rambo-k | 3 | {bio} |
+ pbdagcon | 3 | {bio} |
+ plasmidseeker | 3 | {bio} |
+ qcumber | 3 | {bio} |
relion | 3 | {bio} |
- runcircos-gui | 3 | {bio} |
- samblaster | 3 | {covid-19,bio} |
- segemehl | 3 | {bio} |
seqsero | 3 | {bio} |
- sga | 3 | {bio} |
- soapaligner | 3 | {bio} |
- soapsnp | 3 | {bio} |
- surankco | 3 | {bio} |
- velvetoptimiser | 3 | {bio} |
- yaha | 3 | {bio} |
- beast2-mcmc | 2 | {bio} |
+ tvc | 3 | {bio} |
canu | 2 | {bio} |
cufflinks | 2 | {bio,cloud} |
- delly | 2 | {covid-19,bio} |
- getdata | 2 | {bio} |
+ emboss-explorer | 2 | {bio} |
libctapimkt | 2 | {practice} |
libsbml | 2 | {bio-dev} |
ncbi-vdb | 2 | {bio-dev} |
opencfu | 2 | {laboratory} |
- pbdagcon | 2 | {bio} |
- plasmidseeker | 2 | {bio} |
- qcumber | 2 | {bio} |
+ openslide | 2 | {imaging-dev} |
+ orthanc-mysql | 2 | {imaging} |
samtools-legacy | 2 | {bio-dev} |
simpleitk | 2 | {imaging-dev} |
- tvc | 2 | {bio} |
atropos | 1 | {bio} |
biosig4c++ | 1 | {physics,imaging-dev} |
blimps | 1 | {bio} |
- bustools | 1 | {bio,covid-19} |
cat-bat | 1 | {covid-19,bio} |
+ ctn | 1 | {imaging-dev} |
embassy-phylip | 1 | {cloud,bio} |
- emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
htscodecs | 1 | {covid-19,bio-dev} |
@@ -161,20 +162,18 @@ Last-Update: Thu, 24 Sep 2020 01:42:03 +0000
libmaus2 | 1 | {covid-19,bio-dev} |
libseqlib | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- openslide | 1 | {imaging-dev} |
+ murasaki | 1 | {bio} |
opensurgsim | 1 | {imaging-dev} |
pbcopper | 1 | {bio-dev} |
pilercr | 1 | {bio} |
- q2templates | 1 | {bio} |
relion | 1 | {bio} |
seqan | 1 | {bio-dev} |
sift | 1 | {bio} |
sight | 1 | {imaging} |
skesa | 1 | {bio} |
stringtie | 1 | {bio,covid-19} |
- tophat-recondition | 1 | {bio,covid-19} |
+ trace2dbest | 1 | {bio} |
vienna-rna | 1 | {covid-19,bio} |
- yanagiba | 1 | {bio,covid-19} |
acedb | 0 | {cloud,bio} |
bambamc | 0 | {bio-dev} |
bamkit | 0 | {covid-19,bio} |
@@ -182,9 +181,9 @@ Last-Update: Thu, 24 Sep 2020 01:42:03 +0000
biojava4-live | 0 | {bio-dev} |
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
+ bustools | 0 | {bio,covid-19} |
camp | 0 | {imaging-dev} |
conda-package-handling | 0 | {bio-dev,bio} |
- ctn | 0 | {imaging-dev} |
dextractor | 0 | {bio,covid-19} |
fis-gtm | 0 | {his} |
intake | 0 | {bio-dev,bio} |
@@ -219,7 +218,6 @@ Last-Update: Thu, 24 Sep 2020 01:42:03 +0000
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
milib | 0 | {covid-19,bio-dev} |
- murasaki | 0 | {bio} |
nanosv | 0 | {bio,covid-19} |
ngs-sdk | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
@@ -229,8 +227,9 @@ Last-Update: Thu, 24 Sep 2020 01:42:03 +0000
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {bio,covid-19} |
pplacer | 0 | {covid-19,bio,bio-phylogeny} |
- relion | 0 | {bio} |
+ q2templates | 0 | {bio} |
relion | 0 | {bio-dev} |
+ relion | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
scrappie | 0 | {covid-19,bio} |
@@ -241,10 +240,11 @@ Last-Update: Thu, 24 Sep 2020 01:42:03 +0000
spaln | 0 | {covid-19,bio} |
srf | 0 | {bio-dev} |
thesias | 0 | {covid-19,bio} |
- trace2dbest | 0 | {bio} |
+ tophat-recondition | 0 | {bio,covid-19} |
varna | 0 | {bio} |
varscan | 0 | {bio,covid-19} |
vtk-dicom | 0 | {imaging-dev} |
+ yanagiba | 0 | {bio,covid-19} |
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
shovill | -1 | {bio,covid-19} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a8351f5a1376200ad93a8bc5b2dafe5da82c7c92
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