[med-svn] [Git][med-team/htsjdk][master] lintian cleaning

[Olivier Sallou]

Olivier Sallou pushed to branch master at Debian Med / htsjdk


Commits:
61e92f8d by Olivier Sallou at 2020-09-25T14:06:06+00:00
lintian cleaning

- - - - -


11 changed files:

- debian/changelog
- debian/patches/10-build.xml.patch
- debian/patches/100-fix-java11
- debian/patches/13-skip_network_tests
- debian/patches/40-fix-java9
- − debian/patches/50-fix-javadoc
- debian/patches/60-enable-tests
- debian/patches/80-2to3.patch
- debian/patches/90-disable-testftp.patch
- debian/patches/92-disable-testhttp.patch
- debian/patches/disable-network-tests.diff


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+htsjdk (2.23.0+dfsg-3) UNRELEASED; urgency=medium
+
+  * lintian fixes in d/patches 
+
+ -- Olivier Sallou <osallou at debian.org>  Fri, 25 Sep 2020 14:04:53 +0000
+
 htsjdk (2.23.0+dfsg-2) unstable; urgency=medium
 
   * source-only upload 


=====================================
debian/patches/10-build.xml.patch
=====================================
@@ -1,6 +1,6 @@
 Description: Modifies the upstream build system.
 Origin: vendor
-Forwarded: no
+Forwarded: not-needed
 Author: Andreas Tille <tille at debian.org>
 Last-Update: Wed, 29 Jun 2016 10:45:03 +0200
 


=====================================
debian/patches/100-fix-java11
=====================================
@@ -3,7 +3,7 @@ Description: xml.bind has been removed from openjdk 11,
  add jaxb-api jar file to compilation and classpath
 Author: Olivier Sallou <osallou at debian.org>
 Last-Updated: 2018-11-12
-Forwarded: no
+Forwarded: not-needed
 --- a/build.gradle
 +++ b/build.gradle
 @@ -22,6 +22,7 @@


=====================================
debian/patches/13-skip_network_tests
=====================================
@@ -3,6 +3,7 @@ Subject: disable network tests
 Description: remove network related tests
  fixing bug 808593
 Last-Updated: 2015-01-06
+Forwarded: not-needed
 --- a/src/test/java/htsjdk/samtools/seekablestream/SeekableBufferedStreamTest.java
 +++ b/src/test/java/htsjdk/samtools/seekablestream/SeekableBufferedStreamTest.java
 @@ -42,72 +42,6 @@


=====================================
debian/patches/40-fix-java9
=====================================
@@ -1,9 +1,9 @@
 Subject: add support for java9
-Description: Java 9 uses modules, code makes use fo some modules,
+Description: Java 9 uses modules, code makes use of some modules,
  need to add them
 Author: Olivier Sallou <osallou at debian.org>
 Last-Updated: 17-04-2018
-Forwarded: no
+Forwarded: not-needed
 --- a/build.gradle
 +++ b/build.gradle
 @@ -123,6 +123,7 @@


=====================================
debian/patches/50-fix-javadoc deleted
=====================================
@@ -1,25 +0,0 @@
-Subject: javadoc exception
-Description: some exception is raised by javadoc
- looks like an openjdk issue, this patch removes impacted
- comments
-Author: Olivier Sallou <osallou at debian.org>
-Last-Updated: 2018-04-17
-Forwarded: no
---- a/src/main/java/htsjdk/samtools/util/MergingIterator.java
-+++ b/src/main/java/htsjdk/samtools/util/MergingIterator.java
-@@ -88,7 +88,6 @@
- 	}
- 
- 	/**
--	 * @see java.util.Iterator<T>.hasNext
- 	 */
- 	@Override
- 	public boolean hasNext() {
-@@ -96,7 +95,6 @@
- 	}
- 
- 	/**
--	 * @see java.util.Iterator<T>.next
- 	 */
- 	@Override
- 	public T next() {


=====================================
debian/patches/60-enable-tests
=====================================
@@ -1,7 +1,7 @@
 Author: Olivier Sallou <osallou at debian.org>
 Last-Update: 2018-04-17
 Description: Enable tests using testng
-
+Forwarded: not-needed
 --- a/build.gradle
 +++ b/build.gradle
 @@ -102,6 +102,13 @@


=====================================
debian/patches/80-2to3.patch
=====================================
@@ -1,7 +1,7 @@
 Author: Andreas Tille <tille at debian.org>
 Last-Update: Tue, 17 Apr 2018 15:14:40 +0200
 Description: Use 2to3 to convert Python script to Python3
-
+Forwarded: no
 --- a/scripts/explain_sam_flags.py
 +++ b/scripts/explain_sam_flags.py
 @@ -1,4 +1,4 @@


=====================================
debian/patches/90-disable-testftp.patch
=====================================
@@ -1,7 +1,7 @@
 Author: Olivier Sallou <osallou at debian.org>
 Date:   Tue Sep 18 07:28:01 2018 +0000
 Description: remove unsupported *tags* and disable ftp tests as require network connection
-
+Forwarded: not-needed
 --- a/build.gradle
 +++ b/build.gradle
 @@ -115,15 +115,6 @@


=====================================
debian/patches/92-disable-testhttp.patch
=====================================
@@ -1,7 +1,7 @@
 Author: Andreas Tille <tille at debian.org>
 Date:   Wed Sep 18 14:28:01 2018 +0200
 Description: Skip test requiring http connection
-
+Forwarded: not-needed
 --- a/src/test/java/htsjdk/samtools/util/BlockCompressedInputStreamTest.java
 +++ b/src/test/java/htsjdk/samtools/util/BlockCompressedInputStreamTest.java
 @@ -150,30 +150,6 @@


=====================================
debian/patches/disable-network-tests.diff
=====================================
@@ -2,7 +2,7 @@ Author: Matthias Klose <doko at debian.org>
 Last-Update: Fri, 1 Mar 2019 18:06:32 +0100
 Bug-Debian: https://bugs.debian.org/923539
 Description: Ignore test that accesses the network during the build
-
+Forwarded: not-needed
 --- a/src/test/java/htsjdk/samtools/util/HttpUtilsTest.java
 +++ /dev/null
 @@ -1,34 +0,0 @@



View it on GitLab: https://salsa.debian.org/med-team/htsjdk/-/commit/61e92f8db4a97f951e2f45b56f2707c96d7ff3b8

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View it on GitLab: https://salsa.debian.org/med-team/htsjdk/-/commit/61e92f8db4a97f951e2f45b56f2707c96d7ff3b8
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