Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
e26cba42 by Andreas Tille at 2020-09-29T13:45:42+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,153 +1,154 @@
-Last-Update: Tue, 29 Sep 2020 01:42:04 +0000
+Last-Update: Tue, 29 Sep 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 162 | {imaging,covid-19} |
- orthanc | 87 | {practice,covid-19,imaging} |
- orthanc-wsi | 47 | {his,laboratory,covid-19,imaging,practice,oncology} |
- gdcm | 41 | {imaging-dev} |
- dicomscope | 28 | {imaging} |
+ dcmtk | 161 | {imaging,covid-19} |
+ orthanc | 88 | {practice,covid-19,imaging} |
+ orthanc-wsi | 48 | {his,laboratory,covid-19,imaging,practice,oncology} |
+ gdcm | 40 | {imaging-dev} |
dicom3tools | 27 | {imaging} |
- htsjdk | 27 | {bio-dev} |
+ dicomscope | 26 | {imaging} |
+ htsjdk | 26 | {bio-dev} |
gnumed-server | 18 | {covid-19,practice} |
- ngs-sdk | 15 | {bio-dev} |
+ ngs-sdk | 16 | {bio-dev} |
+ gdcm | 15 | {covid-19,imaging} |
+ gdcm | 15 | {imaging-dev} |
dcm2niix | 14 | {imaging} |
- gdcm | 14 | {imaging-dev} |
- gdcm | 14 | {covid-19,imaging} |
invesalius | 13 | {imaging} |
adun.app | 12 | {bio} |
- minc-tools | 12 | {imaging} |
+ minc-tools | 11 | {imaging} |
nifticlib | 11 | {imaging} |
- dicompyler | 10 | {oncology} |
melting | 10 | {cloud,bio} |
- nifticlib | 10 | {imaging-dev} |
pixelmed | 10 | {imaging} |
- libncl | 9 | {bio} |
- biosig4c++ | 8 | {physics,imaging} |
+ nifticlib | 9 | {imaging-dev} |
+ plastimatch | 9 | {imaging} |
fastlink | 8 | {bio,cloud} |
- insighttoolkit4 | 8 | {imaging-dev} |
- jebl2 | 8 | {bio-dev} |
- king | 8 | {typesetting,imaging} |
+ libncl | 8 | {bio} |
librg-utils-perl | 8 | {bio} |
- openslide | 8 | {imaging} |
orthanc-webviewer | 8 | {imaging} |
- plastimatch | 8 | {imaging} |
- treeview | 8 | {bio,bio-phylogeny} |
+ sibsim4 | 8 | {bio,cloud} |
+ stacks | 8 | {bio} |
anfo | 7 | {cloud,bio} |
biojava-live | 7 | {bio-dev} |
- ea-utils | 7 | {bio} |
- embassy-domalign | 7 | {cloud,bio} |
- embassy-domsearch | 7 | {cloud,bio} |
+ biosig4c++ | 7 | {physics,imaging} |
+ insighttoolkit4 | 7 | {imaging-dev} |
+ king | 7 | {typesetting,imaging} |
mipe | 7 | {cloud,bio} |
multiqc | 7 | {bio,covid-19} |
ngs-sdk | 7 | {bio-dev} |
+ openslide | 7 | {imaging} |
phyutility | 7 | {bio,cloud} |
- saint | 7 | {bio} |
salmon | 7 | {covid-19,bio} |
- sibsim4 | 7 | {bio,cloud} |
- stacks | 7 | {bio} |
- staden | 7 | {bio} |
+ treeview | 7 | {bio,bio-phylogeny} |
+ vtk-dicom | 7 | {imaging} |
bart-view | 6 | {imaging} |
+ dicompyler | 6 | {oncology} |
+ ea-utils | 6 | {bio} |
embassy-domainatrix | 6 | {cloud,bio} |
- fastml | 6 | {bio} |
- fsm-lite | 6 | {bio} |
+ embassy-domalign | 6 | {cloud,bio} |
+ embassy-domsearch | 6 | {cloud,bio} |
gatb-core | 6 | {bio} |
- ipig | 6 | {bio} |
+ jebl2 | 6 | {bio-dev} |
jellyfish1 | 6 | {bio} |
- mhap | 6 | {bio-ngs,bio} |
- nutsqlite | 6 | {tools} |
paraclu | 6 | {bio,cloud} |
perm | 6 | {cloud,bio} |
piler | 6 | {bio} |
- radiant | 6 | {bio} |
- sprai | 6 | {bio} |
+ saint | 6 | {bio} |
spread-phy | 6 | {bio-phylogeny,bio} |
- vtk-dicom | 6 | {imaging} |
- alter-sequence-alignment | 5 | {bio} |
- arden | 5 | {cloud,bio} |
- assemblytics | 5 | {bio} |
- beast-mcmc | 5 | {bio,bio-phylogeny} |
- bitseq | 5 | {bio} |
- clonalorigin | 5 | {bio} |
+ staden | 6 | {bio} |
dindel | 5 | {bio} |
ecopcr | 5 | {bio} |
- elastix | 5 | {imaging} |
- jmodeltest | 5 | {bio-phylogeny,bio} |
+ fastml | 5 | {bio} |
+ fsm-lite | 5 | {bio} |
+ ipig | 5 | {bio} |
lagan | 5 | {bio} |
- lamarc | 5 | {bio} |
libdivsufsort | 5 | {bio-dev} |
- libpal-java | 5 | {bio-dev} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
- mauve-aligner | 5 | {bio} |
- metaphlan2 | 5 | {bio} |
- microbegps | 5 | {bio} |
+ mhap | 5 | {bio-ngs,bio} |
neobio | 5 | {cloud,bio} |
+ nutsqlite | 5 | {tools} |
obitools | 5 | {bio} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
- phast | 5 | {bio} |
phybin | 5 | {bio} |
placnet | 5 | {bio} |
- prime-phylo | 5 | {cloud,bio} |
proalign | 5 | {bio,bio-phylogeny} |
- pscan-chip | 5 | {bio} |
pymia | 5 | {imaging-dev} |
- quorum | 5 | {bio} |
+ radiant | 5 | {bio} |
rdp-classifier | 5 | {bio} |
rtax | 5 | {cloud,bio} |
+ samblaster | 5 | {covid-19,bio} |
scrm | 5 | {bio} |
spaced | 5 | {bio} |
+ sprai | 5 | {bio} |
suitename | 5 | {bio} |
tracetuner | 5 | {bio} |
- zalign | 5 | {cloud,bio} |
- blasr | 4 | {bio-ngs,bio} |
+ alter-sequence-alignment | 4 | {bio} |
+ arden | 4 | {cloud,bio} |
+ assemblytics | 4 | {bio} |
+ beast2-mcmc | 4 | {bio} |
+ beast-mcmc | 4 | {bio,bio-phylogeny} |
+ biomaj3-cli | 4 | {cloud} |
+ bitseq | 4 | {bio} |
brig | 4 | {bio} |
clonalframeml | 4 | {bio,covid-19} |
+ clonalorigin | 4 | {bio} |
+ delly | 4 | {covid-19,bio} |
+ elastix | 4 | {imaging} |
estscan | 4 | {bio} |
ghmm | 4 | {bio} |
hinge | 4 | {bio} |
- libminc | 4 | {imaging-dev} |
- logol | 4 | {bio} |
- murasaki | 4 | {bio} |
+ jmodeltest | 4 | {bio-phylogeny,bio} |
+ lamarc | 4 | {bio} |
+ libpal-java | 4 | {bio-dev} |
+ mauve-aligner | 4 | {bio} |
+ metaphlan2 | 4 | {bio} |
+ microbegps | 4 | {bio} |
+ phast | 4 | {bio} |
+ plasmidseeker | 4 | {bio} |
predictprotein | 4 | {bio} |
+ prime-phylo | 4 | {cloud,bio} |
prottest | 4 | {bio,bio-phylogeny} |
+ pscan-chip | 4 | {bio} |
+ quorum | 4 | {bio} |
rambo-k | 4 | {bio} |
rdp-alignment | 4 | {bio} |
+ relion | 4 | {bio} |
runcircos-gui | 4 | {bio} |
- samblaster | 4 | {covid-19,bio} |
segemehl | 4 | {bio} |
sga | 4 | {bio} |
soapaligner | 4 | {bio} |
soapsnp | 4 | {bio} |
surankco | 4 | {bio} |
+ tvc | 4 | {bio} |
velvetoptimiser | 4 | {bio} |
yaha | 4 | {bio} |
- beast2-mcmc | 3 | {bio} |
- biomaj3-cli | 3 | {cloud} |
+ zalign | 4 | {cloud,bio} |
biomaj3-daemon | 3 | {bio} |
- bio-tradis | 3 | {bio,bio-dev} |
+ blasr | 3 | {bio-ngs,bio} |
busco | 3 | {bio,covid-19} |
- delly | 3 | {covid-19,bio} |
getdata | 3 | {bio} |
+ libminc | 3 | {imaging-dev} |
+ logol | 3 | {bio} |
mrs | 3 | {bio} |
- openslide | 3 | {imaging-dev} |
+ murasaki | 3 | {bio} |
orthanc-postgresql | 3 | {imaging} |
oscar | 3 | {data,practice,tools} |
pbdagcon | 3 | {bio} |
- plasmidseeker | 3 | {bio} |
qcumber | 3 | {bio} |
- relion | 3 | {bio} |
seqsero | 3 | {bio} |
- tvc | 3 | {bio} |
+ bio-tradis | 2 | {bio,bio-dev} |
canu | 2 | {bio} |
emboss-explorer | 2 | {bio} |
libctapimkt | 2 | {practice} |
libsbml | 2 | {bio-dev} |
ncbi-vdb | 2 | {bio-dev} |
opencfu | 2 | {laboratory} |
+ openslide | 2 | {imaging-dev} |
orthanc-mysql | 2 | {imaging} |
samtools-legacy | 2 | {bio-dev} |
seqan | 2 | {bio-dev} |
simpleitk | 2 | {imaging-dev} |
+ trace2dbest | 2 | {bio} |
atropos | 1 | {bio} |
biosig4c++ | 1 | {physics,imaging-dev} |
blimps | 1 | {bio} |
@@ -166,6 +167,7 @@ Last-Update: Tue, 29 Sep 2020 01:42:04 +0000
libvistaio | 1 | {imaging-dev} |
murasaki | 1 | {bio} |
opensurgsim | 1 | {imaging-dev} |
+ papyrus | 1 | {imaging-dev} |
pbcopper | 1 | {bio-dev} |
pilercr | 1 | {bio} |
q2templates | 1 | {bio} |
@@ -174,7 +176,6 @@ Last-Update: Tue, 29 Sep 2020 01:42:04 +0000
sight | 1 | {imaging} |
skesa | 1 | {bio} |
stringtie | 1 | {bio,covid-19} |
- trace2dbest | 1 | {bio} |
acedb | 0 | {cloud,bio} |
bambamc | 0 | {bio-dev} |
bamkit | 0 | {covid-19,bio} |
@@ -222,13 +223,12 @@ Last-Update: Tue, 29 Sep 2020 01:42:04 +0000
ngs-sdk | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
- papyrus | 0 | {imaging-dev} |
parallel-fastq-dump | 0 | {covid-19} |
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {bio,covid-19} |
pplacer | 0 | {covid-19,bio,bio-phylogeny} |
- relion | 0 | {bio} |
relion | 0 | {bio-dev} |
+ relion | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
scrappie | 0 | {covid-19,bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e26cba42e72c65acc4469acd613dc524242acf7c
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e26cba42e72c65acc4469acd613dc524242acf7c
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