Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
eb767e7a by Andreas Tille at 2021-04-01T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,74 +1,83 @@
-Last-Update: Thu, 01 Apr 2021 01:42:03 +0000
+Last-Update: Thu, 01 Apr 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 209 | {covid-19,imaging} |
- orthanc | 95 | {covid-19,imaging,practice} |
+ dcmtk | 208 | {covid-19,imaging} |
+ orthanc | 96 | {covid-19,imaging,practice} |
orthanc-wsi | 47 | {his,practice,covid-19,oncology,imaging,laboratory} |
- gdcm | 37 | {imaging-dev} |
- amide | 34 | {imaging} |
- dicom3tools | 30 | {imaging} |
- openslide | 30 | {imaging} |
- dicomscope | 27 | {imaging} |
- dcm2niix | 21 | {imaging} |
- htsjdk | 21 | {bio-dev} |
- odin | 21 | {imaging,imaging-dev} |
- gdcm | 20 | {covid-19,imaging} |
+ amide | 36 | {imaging} |
+ gdcm | 36 | {imaging-dev} |
+ dicom3tools | 33 | {imaging} |
+ openslide | 32 | {imaging} |
+ dicomscope | 28 | {imaging} |
+ dcm2niix | 25 | {imaging} |
+ gdcm | 22 | {covid-19,imaging} |
+ htsjdk | 22 | {bio-dev} |
+ odin | 22 | {imaging,imaging-dev} |
+ minc-tools | 19 | {imaging} |
+ nifticlib | 19 | {imaging} |
+ dicomnifti | 17 | {imaging} |
gdcm | 17 | {imaging-dev} |
invesalius | 17 | {imaging} |
- nifticlib | 17 | {imaging} |
- dicomnifti | 16 | {imaging} |
+ pixelmed | 17 | {imaging} |
gnumed-server | 16 | {covid-19,practice} |
- minc-tools | 16 | {imaging} |
- pixelmed | 14 | {imaging} |
- mia | 12 | {imaging} |
- vtk-dicom | 12 | {imaging} |
- adun.app | 11 | {bio} |
+ mia | 15 | {imaging} |
+ vtk-dicom | 14 | {imaging} |
+ adun.app | 12 | {bio} |
insighttoolkit4 | 11 | {imaging-dev} |
- ngs-sdk | 11 | {bio-dev} |
orthanc-webviewer | 11 | {imaging} |
- plastimatch | 10 | {imaging} |
- nifti2dicom | 9 | {imaging} |
+ plastimatch | 11 | {imaging} |
+ ngs-sdk | 10 | {bio-dev} |
+ nifti2dicom | 10 | {imaging} |
+ king | 9 | {typesetting,imaging} |
bamkit | 8 | {bio,covid-19} |
- king | 8 | {typesetting,imaging} |
melting | 8 | {cloud,bio} |
ngs-sdk | 7 | {bio-dev} |
+ dicompyler | 6 | {oncology} |
+ jebl2 | 6 | {bio-dev} |
libminc | 6 | {imaging-dev} |
treeview | 6 | {bio-phylogeny,bio} |
- dicompyler | 5 | {oncology} |
- jebl2 | 5 | {bio-dev} |
librg-utils-perl | 5 | {bio} |
+ obitools | 5 | {bio} |
openslide | 5 | {imaging-dev} |
salmid | 5 | {bio} |
+ tracetuner | 5 | {bio} |
bart-view | 4 | {imaging} |
+ beast-mcmc | 4 | {bio-phylogeny,bio} |
+ biojava-live | 4 | {bio-dev} |
+ biomaj3-cli | 4 | {cloud} |
busco | 4 | {covid-19,bio} |
cufflinks | 4 | {cloud,bio} |
ea-utils | 4 | {bio} |
elastix | 4 | {imaging} |
+ estscan | 4 | {bio} |
lagan | 4 | {bio} |
+ libncl | 4 | {bio} |
ngs-sdk | 4 | {bio-dev} |
- obitools | 4 | {bio} |
orthanc-dicomweb | 4 | {imaging,covid-19} |
pymia | 4 | {imaging-dev} |
rambo-k | 4 | {bio} |
salmon | 4 | {covid-19,bio} |
spread-phy | 4 | {bio,bio-phylogeny} |
- tracetuner | 4 | {bio} |
- beast-mcmc | 3 | {bio-phylogeny,bio} |
- biojava-live | 3 | {bio-dev} |
- biomaj3-cli | 3 | {cloud} |
+ anfo | 3 | {cloud,bio} |
+ arden | 3 | {cloud,bio} |
+ assemblytics | 3 | {bio} |
+ bio-tradis | 3 | {bio,bio-dev} |
+ bitseq | 3 | {bio} |
clonalframeml | 3 | {covid-19,bio} |
- estscan | 3 | {bio} |
+ ecopcr | 3 | {bio} |
+ embassy-domalign | 3 | {cloud,bio} |
getdata | 3 | {bio} |
ghmm | 3 | {bio} |
jellyfish1 | 3 | {bio} |
lamarc | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
- libncl | 3 | {bio} |
+ logol | 3 | {bio} |
nifticlib | 3 | {imaging-dev} |
orthanc-postgresql | 3 | {imaging} |
oscar | 3 | {practice,data,tools} |
pbdagcon | 3 | {bio} |
+ phast | 3 | {bio} |
phyutility | 3 | {cloud,bio} |
piler | 3 | {bio} |
plasmidid | 3 | {covid-19,bio} |
@@ -76,15 +85,14 @@ Last-Update: Thu, 01 Apr 2021 01:42:03 +0000
runcircos-gui | 3 | {bio} |
saint | 3 | {bio} |
sambamba | 3 | {bio} |
+ segemehl | 3 | {bio} |
sibsim4 | 3 | {cloud,bio} |
+ sight | 3 | {imaging} |
stacks | 3 | {bio} |
suitename | 3 | {bio} |
- anfo | 2 | {cloud,bio} |
- arden | 2 | {cloud,bio} |
- assemblytics | 2 | {bio} |
+ yaha | 3 | {bio} |
+ zalign | 3 | {bio,cloud} |
atropos | 2 | {bio} |
- bio-tradis | 2 | {bio,bio-dev} |
- bitseq | 2 | {bio} |
blasr | 2 | {bio,bio-ngs} |
blimps | 2 | {bio} |
brig | 2 | {bio} |
@@ -92,9 +100,7 @@ Last-Update: Thu, 01 Apr 2021 01:42:03 +0000
cat-bat | 2 | {covid-19,bio} |
clonalorigin | 2 | {bio} |
delly | 2 | {covid-19,bio} |
- ecopcr | 2 | {bio} |
embassy-domainatrix | 2 | {cloud,bio} |
- embassy-domalign | 2 | {cloud,bio} |
embassy-domsearch | 2 | {bio,cloud} |
fastml | 2 | {bio} |
gatb-core | 2 | {bio} |
@@ -106,7 +112,6 @@ Last-Update: Thu, 01 Apr 2021 01:42:03 +0000
libpal-java | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
libsbml | 2 | {bio-dev} |
- logol | 2 | {bio} |
mauve-aligner | 2 | {bio} |
mhap | 2 | {bio-ngs,bio} |
microbegps | 2 | {bio} |
@@ -114,7 +119,6 @@ Last-Update: Thu, 01 Apr 2021 01:42:03 +0000
orthanc-mysql | 2 | {imaging} |
paraclu | 2 | {bio,cloud} |
perm | 2 | {cloud,bio} |
- phast | 2 | {bio} |
placnet | 2 | {bio} |
plasmidseeker | 2 | {bio} |
prime-phylo | 2 | {bio,cloud} |
@@ -126,7 +130,6 @@ Last-Update: Thu, 01 Apr 2021 01:42:03 +0000
rdp-classifier | 2 | {bio} |
rtax | 2 | {cloud,bio} |
samblaster | 2 | {bio,covid-19} |
- segemehl | 2 | {bio} |
seq-gen | 2 | {bio} |
sga | 2 | {bio} |
sift | 2 | {bio} |
@@ -139,8 +142,6 @@ Last-Update: Thu, 01 Apr 2021 01:42:03 +0000
trace2dbest | 2 | {bio} |
tvc | 2 | {bio} |
varscan | 2 | {bio,covid-19} |
- yaha | 2 | {bio} |
- zalign | 2 | {bio,cloud} |
acedb | 1 | {cloud,bio} |
bbmap | 1 | {covid-19,bio} |
bustools | 1 | {bio,covid-19} |
@@ -157,6 +158,7 @@ Last-Update: Thu, 01 Apr 2021 01:42:03 +0000
ncbi-vdb | 1 | {bio-dev} |
opencfu | 1 | {laboratory} |
orthanc-gdcm | 1 | {imaging} |
+ papyrus | 1 | {imaging-dev} |
pigx-rnaseq | 1 | {covid-19,bio} |
pilercr | 1 | {bio} |
pique | 1 | {bio} |
@@ -164,7 +166,6 @@ Last-Update: Thu, 01 Apr 2021 01:42:03 +0000
python-bcbio-gff | 1 | {bio-dev} |
samtools-legacy | 1 | {bio-dev} |
shovill | 1 | {bio,covid-19} |
- sight | 1 | {imaging} |
simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
skewer | 1 | {bio} |
@@ -219,7 +220,6 @@ Last-Update: Thu, 01 Apr 2021 01:42:03 +0000
nifticlib | 0 | {imaging-dev} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
- papyrus | 0 | {imaging-dev} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/eb767e7af34cd06519457a688605ceb0cf469d5f
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/eb767e7af34cd06519457a688605ceb0cf469d5f
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