Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
7f62a05d by Andreas Tille at 2021-04-06T13:42:24+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,19 +1,19 @@
-Last-Update: Tue, 06 Apr 2021 01:42:03 +0000
+Last-Update: Tue, 06 Apr 2021 13:42:06 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 206 | {covid-19,imaging} |
- orthanc | 98 | {covid-19,imaging,practice} |
- orthanc-wsi | 47 | {his,practice,covid-19,oncology,imaging,laboratory} |
- gdcm | 40 | {imaging-dev} |
+ dcmtk | 203 | {covid-19,imaging} |
+ orthanc | 96 | {covid-19,imaging,practice} |
+ orthanc-wsi | 46 | {his,practice,covid-19,oncology,imaging,laboratory} |
+ gdcm | 39 | {imaging-dev} |
amide | 36 | {imaging} |
- dicom3tools | 33 | {imaging} |
- openslide | 33 | {imaging} |
- dicomscope | 27 | {imaging} |
+ openslide | 35 | {imaging} |
+ dicom3tools | 34 | {imaging} |
+ dicomscope | 28 | {imaging} |
dcm2niix | 25 | {imaging} |
gdcm | 22 | {covid-19,imaging} |
odin | 22 | {imaging,imaging-dev} |
- htsjdk | 20 | {bio-dev} |
+ htsjdk | 21 | {bio-dev} |
minc-tools | 19 | {imaging} |
nifticlib | 18 | {imaging} |
pixelmed | 17 | {imaging} |
@@ -23,25 +23,27 @@ Last-Update: Tue, 06 Apr 2021 01:42:03 +0000
mia | 16 | {imaging} |
gnumed-server | 15 | {covid-19,practice} |
vtk-dicom | 15 | {imaging} |
+ nipype | 12 | {imaging-dev,imaging} |
plastimatch | 12 | {imaging} |
adun.app | 11 | {bio} |
insighttoolkit4 | 11 | {imaging-dev} |
- nifti2dicom | 11 | {imaging} |
orthanc-webviewer | 11 | {imaging} |
nifti2dicom | 10 | {imaging} |
king | 9 | {typesetting,imaging} |
melting | 9 | {cloud,bio} |
+ nifti2dicom | 9 | {imaging} |
ngs-sdk | 8 | {bio-dev} |
ngs-sdk | 7 | {bio-dev} |
+ treeview | 7 | {bio-phylogeny,bio} |
bamkit | 6 | {bio,covid-19} |
dicompyler | 6 | {oncology} |
jebl2 | 6 | {bio-dev} |
libminc | 6 | {imaging-dev} |
- nipype | 6 | {imaging-dev,imaging} |
- treeview | 6 | {bio-phylogeny,bio} |
+ librg-utils-perl | 6 | {bio} |
+ biomaj3-cli | 5 | {cloud} |
elastix | 5 | {imaging} |
lagan | 5 | {bio} |
- librg-utils-perl | 5 | {bio} |
+ libncl | 5 | {bio} |
obitools | 5 | {bio} |
openslide | 5 | {imaging-dev} |
salmid | 5 | {bio} |
@@ -50,36 +52,37 @@ Last-Update: Tue, 06 Apr 2021 01:42:03 +0000
bart-view | 4 | {imaging} |
beast-mcmc | 4 | {bio-phylogeny,bio} |
biojava-live | 4 | {bio-dev} |
- biomaj3-cli | 4 | {cloud} |
+ bio-tradis | 4 | {bio,bio-dev} |
+ bitseq | 4 | {bio} |
ea-utils | 4 | {bio} |
estscan | 4 | {bio} |
lamarc | 4 | {bio} |
- libncl | 4 | {bio} |
ngs-sdk | 4 | {bio-dev} |
orthanc-dicomweb | 4 | {imaging,covid-19} |
orthanc-mysql | 4 | {imaging} |
+ phast | 4 | {bio} |
pymia | 4 | {imaging-dev} |
spread-phy | 4 | {bio,bio-phylogeny} |
anfo | 3 | {cloud,bio} |
arden | 3 | {cloud,bio} |
assemblytics | 3 | {bio} |
- bio-tradis | 3 | {bio,bio-dev} |
- bitseq | 3 | {bio} |
+ blasr | 3 | {bio,bio-ngs} |
blimps | 3 | {bio} |
busco | 3 | {covid-19,bio} |
clonalframeml | 3 | {covid-19,bio} |
+ clonalorigin | 3 | {bio} |
ecopcr | 3 | {bio} |
+ embassy-domainatrix | 3 | {cloud,bio} |
embassy-domalign | 3 | {cloud,bio} |
+ gatb-core | 3 | {bio} |
getdata | 3 | {bio} |
ghmm | 3 | {bio} |
jellyfish1 | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
- libpal-java | 3 | {bio-dev} |
logol | 3 | {bio} |
nifticlib | 3 | {imaging-dev} |
orthanc-postgresql | 3 | {imaging} |
pbdagcon | 3 | {bio} |
- phast | 3 | {bio} |
phyutility | 3 | {cloud,bio} |
piler | 3 | {bio} |
plasmidid | 3 | {covid-19,bio} |
@@ -87,29 +90,31 @@ Last-Update: Tue, 06 Apr 2021 01:42:03 +0000
runcircos-gui | 3 | {bio} |
saint | 3 | {bio} |
sambamba | 3 | {bio} |
+ samblaster | 3 | {bio,covid-19} |
sibsim4 | 3 | {cloud,bio} |
sift | 3 | {bio} |
+ soapaligner | 3 | {bio} |
+ sprai | 3 | {bio} |
stacks | 3 | {bio} |
+ staden | 3 | {bio} |
suitename | 3 | {bio} |
+ tvc | 3 | {bio} |
yaha | 3 | {bio} |
zalign | 3 | {bio,cloud} |
atropos | 2 | {bio} |
- blasr | 2 | {bio,bio-ngs} |
brig | 2 | {bio} |
canu | 2 | {bio} |
cat-bat | 2 | {covid-19,bio} |
- clonalorigin | 2 | {bio} |
cufflinks | 2 | {cloud,bio} |
delly | 2 | {covid-19,bio} |
- embassy-domainatrix | 2 | {cloud,bio} |
embassy-domsearch | 2 | {bio,cloud} |
fastml | 2 | {bio} |
- gatb-core | 2 | {bio} |
gifticlib | 2 | {imaging-dev} |
hinge | 2 | {bio} |
intake | 2 | {bio-dev,bio} |
ipig | 2 | {bio} |
jmodeltest | 2 | {bio,bio-phylogeny} |
+ libpal-java | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
libsbml | 2 | {bio-dev} |
mauve-aligner | 2 | {bio} |
@@ -123,26 +128,21 @@ Last-Update: Tue, 06 Apr 2021 01:42:03 +0000
prime-phylo | 2 | {bio,cloud} |
proalign | 2 | {bio,bio-phylogeny} |
pscan-chip | 2 | {bio} |
- python-wdlparse | 2 | {bio-dev} |
qcumber | 2 | {bio} |
quorum | 2 | {bio} |
rambo-k | 2 | {bio} |
rdp-classifier | 2 | {bio} |
rtax | 2 | {cloud,bio} |
- samblaster | 2 | {bio,covid-19} |
segemehl | 2 | {bio} |
seq-gen | 2 | {bio} |
sga | 2 | {bio} |
sight | 2 | {imaging} |
- soapaligner | 2 | {bio} |
soapsnp | 2 | {bio} |
spaced | 2 | {bio} |
- sprai | 2 | {bio} |
- staden | 2 | {bio} |
surankco | 2 | {bio} |
trace2dbest | 2 | {bio} |
- tvc | 2 | {bio} |
varscan | 2 | {bio,covid-19} |
+ vienna-rna | 2 | {covid-19,bio} |
acedb | 1 | {cloud,bio} |
bbmap | 1 | {covid-19,bio} |
bustools | 1 | {bio,covid-19} |
@@ -164,6 +164,7 @@ Last-Update: Tue, 06 Apr 2021 01:42:03 +0000
pique | 1 | {bio} |
pplacer | 1 | {bio-phylogeny,covid-19,bio} |
python-bcbio-gff | 1 | {bio-dev} |
+ python-wdlparse | 1 | {bio-dev} |
samtools-legacy | 1 | {bio-dev} |
shovill | 1 | {bio,covid-19} |
simpleitk | 1 | {imaging-dev} |
@@ -173,7 +174,7 @@ Last-Update: Tue, 06 Apr 2021 01:42:03 +0000
svim | 1 | {bio} |
thesias | 1 | {bio,covid-19} |
tophat-recondition | 1 | {covid-19,bio} |
- vienna-rna | 1 | {covid-19,bio} |
+ varna | 1 | {bio} |
yanagiba | 1 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
@@ -234,7 +235,6 @@ Last-Update: Tue, 06 Apr 2021 01:42:03 +0000
simrisc | 0 | {oncology} |
smrtanalysis | 0 | {bio,covid-19} |
srf | 0 | {bio-dev} |
- varna | 0 | {bio} |
vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
mssstest | -1 | {tools} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7f62a05dfb50a0e0b4488a514b23b0ff18577d00
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7f62a05dfb50a0e0b4488a514b23b0ff18577d00
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