Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
2a2825ec by Andreas Tille at 2021-04-09T13:42:19+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,66 +1,68 @@
-Last-Update: Fri, 09 Apr 2021 01:42:03 +0000
+Last-Update: Fri, 09 Apr 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 203 | {covid-19,imaging} |
- orthanc | 96 | {covid-19,imaging,practice} |
- orthanc-wsi | 47 | {his,practice,covid-19,oncology,imaging,laboratory} |
- gdcm | 42 | {imaging-dev} |
- amide | 38 | {imaging} |
- dicom3tools | 34 | {imaging} |
- openslide | 31 | {imaging} |
- dicomscope | 26 | {imaging} |
+ orthanc | 97 | {covid-19,imaging,practice} |
+ orthanc-wsi | 48 | {his,practice,covid-19,oncology,imaging,laboratory} |
+ gdcm | 41 | {imaging-dev} |
+ amide | 37 | {imaging} |
+ dicom3tools | 32 | {imaging} |
+ openslide | 28 | {imaging} |
dcm2niix | 24 | {imaging} |
- nipype | 23 | {imaging-dev,imaging} |
- gdcm | 22 | {covid-19,imaging} |
- odin | 21 | {imaging,imaging-dev} |
- htsjdk | 19 | {bio-dev} |
- minc-tools | 18 | {imaging} |
- nifticlib | 18 | {imaging} |
- dicomnifti | 17 | {imaging} |
- gdcm | 16 | {imaging-dev} |
- invesalius | 16 | {imaging} |
- pixelmed | 16 | {imaging} |
+ dicomscope | 24 | {imaging} |
+ nipype | 24 | {imaging-dev,imaging} |
+ gdcm | 20 | {covid-19,imaging} |
+ htsjdk | 20 | {bio-dev} |
+ odin | 20 | {imaging,imaging-dev} |
+ gdcm | 17 | {imaging-dev} |
+ minc-tools | 17 | {imaging} |
+ nifticlib | 17 | {imaging} |
+ dicomnifti | 16 | {imaging} |
gnumed-server | 15 | {covid-19,practice} |
- mia | 15 | {imaging} |
+ invesalius | 15 | {imaging} |
+ pixelmed | 15 | {imaging} |
vtk-dicom | 15 | {imaging} |
+ mia | 13 | {imaging} |
insighttoolkit4 | 12 | {imaging-dev} |
- plastimatch | 12 | {imaging} |
- adun.app | 11 | {bio} |
orthanc-webviewer | 11 | {imaging} |
- king | 9 | {typesetting,imaging} |
+ plastimatch | 11 | {imaging} |
+ adun.app | 10 | {bio} |
+ ngs-sdk | 9 | {bio-dev} |
nifti2dicom | 9 | {imaging} |
- melting | 8 | {cloud,bio} |
- ngs-sdk | 8 | {bio-dev} |
+ king | 8 | {typesetting,imaging} |
+ treeview | 8 | {bio-phylogeny,bio} |
+ biomaj3-cli | 7 | {cloud} |
+ melting | 7 | {cloud,bio} |
+ ngs-sdk | 7 | {bio-dev} |
nifti2dicom | 7 | {imaging} |
- treeview | 7 | {bio-phylogeny,bio} |
+ obitools | 7 | {bio} |
+ ea-utils | 6 | {bio} |
jebl2 | 6 | {bio-dev} |
+ lagan | 6 | {bio} |
libminc | 6 | {imaging-dev} |
- ngs-sdk | 6 | {bio-dev} |
- bamkit | 5 | {bio,covid-19} |
- biomaj3-cli | 5 | {cloud} |
+ bitseq | 5 | {bio} |
dicompyler | 5 | {oncology} |
- ea-utils | 5 | {bio} |
- lagan | 5 | {bio} |
+ lamarc | 5 | {bio} |
libncl | 5 | {bio} |
librg-utils-perl | 5 | {bio} |
- ngs-sdk | 5 | {bio-dev} |
- obitools | 5 | {bio} |
openslide | 5 | {imaging-dev} |
+ phast | 5 | {bio} |
salmid | 5 | {bio} |
salmon | 5 | {covid-19,bio} |
tracetuner | 5 | {bio} |
+ bamkit | 4 | {bio,covid-19} |
bart-view | 4 | {imaging} |
beast-mcmc | 4 | {bio-phylogeny,bio} |
biojava-live | 4 | {bio-dev} |
bio-tradis | 4 | {bio,bio-dev} |
- bitseq | 4 | {bio} |
+ ecopcr | 4 | {bio} |
elastix | 4 | {imaging} |
- estscan | 4 | {bio} |
- lamarc | 4 | {bio} |
+ embassy-domainatrix | 4 | {cloud,bio} |
+ ghmm | 4 | {bio} |
+ ngs-sdk | 4 | {bio-dev} |
orthanc-dicomweb | 4 | {imaging,covid-19} |
orthanc-mysql | 4 | {imaging} |
- phast | 4 | {bio} |
pymia | 4 | {imaging-dev} |
spread-phy | 4 | {bio,bio-phylogeny} |
anfo | 3 | {cloud,bio} |
@@ -69,34 +71,35 @@ Last-Update: Fri, 09 Apr 2021 01:42:03 +0000
blasr | 3 | {bio,bio-ngs} |
blimps | 3 | {bio} |
busco | 3 | {covid-19,bio} |
- clonalframeml | 3 | {covid-19,bio} |
clonalorigin | 3 | {bio} |
- ecopcr | 3 | {bio} |
- embassy-domainatrix | 3 | {cloud,bio} |
embassy-domalign | 3 | {cloud,bio} |
+ embassy-domsearch | 3 | {bio,cloud} |
+ estscan | 3 | {bio} |
gatb-core | 3 | {bio} |
getdata | 3 | {bio} |
- ghmm | 3 | {bio} |
jellyfish1 | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
logol | 3 | {bio} |
+ microbegps | 3 | {bio} |
nifticlib | 3 | {imaging-dev} |
orthanc-postgresql | 3 | {imaging} |
pbdagcon | 3 | {bio} |
+ perm | 3 | {cloud,bio} |
phyutility | 3 | {cloud,bio} |
piler | 3 | {bio} |
- plasmidid | 3 | {covid-19,bio} |
+ quorum | 3 | {bio} |
+ rambo-k | 3 | {bio} |
+ rtax | 3 | {cloud,bio} |
runcircos-gui | 3 | {bio} |
saint | 3 | {bio} |
- sambamba | 3 | {bio} |
samblaster | 3 | {bio,covid-19} |
+ segemehl | 3 | {bio} |
sibsim4 | 3 | {cloud,bio} |
sift | 3 | {bio} |
soapaligner | 3 | {bio} |
sprai | 3 | {bio} |
stacks | 3 | {bio} |
staden | 3 | {bio} |
- suitename | 3 | {bio} |
tvc | 3 | {bio} |
yaha | 3 | {bio} |
zalign | 3 | {bio,cloud} |
@@ -104,9 +107,9 @@ Last-Update: Fri, 09 Apr 2021 01:42:03 +0000
brig | 2 | {bio} |
canu | 2 | {bio} |
cat-bat | 2 | {covid-19,bio} |
+ clonalframeml | 2 | {covid-19,bio} |
cufflinks | 2 | {cloud,bio} |
delly | 2 | {covid-19,bio} |
- embassy-domsearch | 2 | {bio,cloud} |
fastml | 2 | {bio} |
gifticlib | 2 | {imaging-dev} |
hinge | 2 | {bio} |
@@ -119,26 +122,23 @@ Last-Update: Fri, 09 Apr 2021 01:42:03 +0000
libsbml | 2 | {bio-dev} |
mauve-aligner | 2 | {bio} |
mhap | 2 | {bio-ngs,bio} |
- microbegps | 2 | {bio} |
paraclu | 2 | {bio,cloud} |
- perm | 2 | {cloud,bio} |
placnet | 2 | {bio} |
+ plasmidid | 2 | {covid-19,bio} |
plasmidseeker | 2 | {bio} |
prime-phylo | 2 | {bio,cloud} |
proalign | 2 | {bio,bio-phylogeny} |
pscan-chip | 2 | {bio} |
+ python-wdlparse | 2 | {bio-dev} |
qcumber | 2 | {bio} |
- quorum | 2 | {bio} |
- rambo-k | 2 | {bio} |
rdp-alignment | 2 | {bio} |
rdp-classifier | 2 | {bio} |
- rtax | 2 | {cloud,bio} |
- segemehl | 2 | {bio} |
- seq-gen | 2 | {bio} |
+ sambamba | 2 | {bio} |
sga | 2 | {bio} |
sight | 2 | {imaging} |
soapsnp | 2 | {bio} |
spaced | 2 | {bio} |
+ suitename | 2 | {bio} |
surankco | 2 | {bio} |
trace2dbest | 2 | {bio} |
varscan | 2 | {bio,covid-19} |
@@ -149,9 +149,8 @@ Last-Update: Fri, 09 Apr 2021 01:42:03 +0000
dextractor | 1 | {bio,covid-19} |
emmax | 1 | {bio} |
fsm-lite | 1 | {bio} |
- htscodecs | 1 | {covid-19,bio-dev} |
kmerresistance | 1 | {bio} |
- libmuscle | 1 | {bio-dev} |
+ libchado-perl | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
metaphlan2 | 1 | {bio} |
nanosv | 1 | {covid-19,bio} |
@@ -164,8 +163,8 @@ Last-Update: Fri, 09 Apr 2021 01:42:03 +0000
pique | 1 | {bio} |
pplacer | 1 | {bio-phylogeny,covid-19,bio} |
python-bcbio-gff | 1 | {bio-dev} |
- python-wdlparse | 1 | {bio-dev} |
samtools-legacy | 1 | {bio-dev} |
+ seq-gen | 1 | {bio} |
shovill | 1 | {bio,covid-19} |
simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
@@ -185,6 +184,7 @@ Last-Update: Fri, 09 Apr 2021 01:42:03 +0000
emboss-explorer | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
+ htscodecs | 0 | {covid-19,bio-dev} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbio-mage-utils-perl | 0 | {bio-dev} |
@@ -196,7 +196,6 @@ Last-Update: Fri, 09 Apr 2021 01:42:03 +0000
libbpp-raa | 0 | {bio-dev} |
libbpp-seq | 0 | {bio-dev} |
libbpp-seq-omics | 0 | {bio-dev} |
- libchado-perl | 0 | {bio-dev} |
libdisorder | 0 | {bio-dev} |
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
@@ -206,6 +205,7 @@ Last-Update: Fri, 09 Apr 2021 01:42:03 +0000
libmaus2 | 0 | {bio-dev,covid-19} |
libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
+ libmuscle | 0 | {bio-dev} |
libncl | 0 | {bio-dev} |
libpsortb | 0 | {bio-dev} |
libqes | 0 | {bio-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2a2825ecbac5f7af30161f72972a57ec25457f67
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2a2825ecbac5f7af30161f72972a57ec25457f67
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