Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
75778d3f by Andreas Tille at 2021-04-10T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,178 +1,175 @@
-Last-Update: Sat, 10 Apr 2021 01:42:04 +0000
+Last-Update: Sat, 10 Apr 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 203 | {covid-19,imaging} |
- orthanc | 97 | {covid-19,imaging,practice} |
+ dcmtk | 204 | {covid-19,imaging} |
+ orthanc | 98 | {covid-19,imaging,practice} |
orthanc-wsi | 48 | {his,practice,covid-19,oncology,imaging,laboratory} |
- gdcm | 41 | {imaging-dev} |
- amide | 37 | {imaging} |
- dicom3tools | 32 | {imaging} |
- openslide | 28 | {imaging} |
- dcm2niix | 24 | {imaging} |
- dicomscope | 24 | {imaging} |
- nipype | 24 | {imaging-dev,imaging} |
+ amide | 39 | {imaging} |
+ gdcm | 39 | {imaging-dev} |
+ dicom3tools | 33 | {imaging} |
+ nipype | 28 | {imaging-dev,imaging} |
+ openslide | 26 | {imaging} |
+ dcm2niix | 25 | {imaging} |
+ dicomscope | 25 | {imaging} |
+ odin | 21 | {imaging,imaging-dev} |
gdcm | 20 | {covid-19,imaging} |
htsjdk | 20 | {bio-dev} |
- odin | 20 | {imaging,imaging-dev} |
+ minc-tools | 18 | {imaging} |
+ nifticlib | 18 | {imaging} |
gdcm | 17 | {imaging-dev} |
- minc-tools | 17 | {imaging} |
- nifticlib | 17 | {imaging} |
dicomnifti | 16 | {imaging} |
gnumed-server | 15 | {covid-19,practice} |
invesalius | 15 | {imaging} |
- pixelmed | 15 | {imaging} |
- vtk-dicom | 15 | {imaging} |
- mia | 13 | {imaging} |
- insighttoolkit4 | 12 | {imaging-dev} |
- orthanc-webviewer | 11 | {imaging} |
- plastimatch | 11 | {imaging} |
+ mia | 14 | {imaging} |
+ pixelmed | 14 | {imaging} |
+ vtk-dicom | 14 | {imaging} |
+ orthanc-webviewer | 12 | {imaging} |
+ plastimatch | 12 | {imaging} |
+ insighttoolkit4 | 11 | {imaging-dev} |
adun.app | 10 | {bio} |
+ nifti2dicom | 10 | {imaging} |
ngs-sdk | 9 | {bio-dev} |
- nifti2dicom | 9 | {imaging} |
king | 8 | {typesetting,imaging} |
- treeview | 8 | {bio-phylogeny,bio} |
- biomaj3-cli | 7 | {cloud} |
+ ngs-sdk | 8 | {bio-dev} |
+ nifti2dicom | 8 | {imaging} |
melting | 7 | {cloud,bio} |
- ngs-sdk | 7 | {bio-dev} |
- nifti2dicom | 7 | {imaging} |
- obitools | 7 | {bio} |
+ treeview | 7 | {bio-phylogeny,bio} |
+ bamkit | 6 | {bio,covid-19} |
+ biomaj3-cli | 6 | {cloud} |
ea-utils | 6 | {bio} |
- jebl2 | 6 | {bio-dev} |
lagan | 6 | {bio} |
libminc | 6 | {imaging-dev} |
- bitseq | 5 | {bio} |
dicompyler | 5 | {oncology} |
- lamarc | 5 | {bio} |
- libncl | 5 | {bio} |
- librg-utils-perl | 5 | {bio} |
+ jebl2 | 5 | {bio-dev} |
+ ngs-sdk | 5 | {bio-dev} |
+ obitools | 5 | {bio} |
openslide | 5 | {imaging-dev} |
- phast | 5 | {bio} |
salmid | 5 | {bio} |
- salmon | 5 | {covid-19,bio} |
- tracetuner | 5 | {bio} |
- bamkit | 4 | {bio,covid-19} |
bart-view | 4 | {imaging} |
- beast-mcmc | 4 | {bio-phylogeny,bio} |
- biojava-live | 4 | {bio-dev} |
- bio-tradis | 4 | {bio,bio-dev} |
- ecopcr | 4 | {bio} |
- elastix | 4 | {imaging} |
- embassy-domainatrix | 4 | {cloud,bio} |
- ghmm | 4 | {bio} |
- ngs-sdk | 4 | {bio-dev} |
+ bitseq | 4 | {bio} |
+ lamarc | 4 | {bio} |
+ libncl | 4 | {bio} |
+ librg-utils-perl | 4 | {bio} |
orthanc-dicomweb | 4 | {imaging,covid-19} |
orthanc-mysql | 4 | {imaging} |
+ phast | 4 | {bio} |
pymia | 4 | {imaging-dev} |
- spread-phy | 4 | {bio,bio-phylogeny} |
- anfo | 3 | {cloud,bio} |
- arden | 3 | {cloud,bio} |
- assemblytics | 3 | {bio} |
+ salmon | 4 | {covid-19,bio} |
+ tracetuner | 4 | {bio} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
+ biojava-live | 3 | {bio-dev} |
+ bio-tradis | 3 | {bio,bio-dev} |
blasr | 3 | {bio,bio-ngs} |
- blimps | 3 | {bio} |
busco | 3 | {covid-19,bio} |
- clonalorigin | 3 | {bio} |
- embassy-domalign | 3 | {cloud,bio} |
- embassy-domsearch | 3 | {bio,cloud} |
- estscan | 3 | {bio} |
- gatb-core | 3 | {bio} |
+ ecopcr | 3 | {bio} |
+ elastix | 3 | {imaging} |
+ embassy-domainatrix | 3 | {cloud,bio} |
getdata | 3 | {bio} |
- jellyfish1 | 3 | {bio} |
+ ghmm | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
- logol | 3 | {bio} |
- microbegps | 3 | {bio} |
nifticlib | 3 | {imaging-dev} |
orthanc-postgresql | 3 | {imaging} |
- pbdagcon | 3 | {bio} |
- perm | 3 | {cloud,bio} |
- phyutility | 3 | {cloud,bio} |
- piler | 3 | {bio} |
- quorum | 3 | {bio} |
+ plasmidid | 3 | {covid-19,bio} |
rambo-k | 3 | {bio} |
- rtax | 3 | {cloud,bio} |
- runcircos-gui | 3 | {bio} |
- saint | 3 | {bio} |
- samblaster | 3 | {bio,covid-19} |
- segemehl | 3 | {bio} |
- sibsim4 | 3 | {cloud,bio} |
- sift | 3 | {bio} |
- soapaligner | 3 | {bio} |
- sprai | 3 | {bio} |
- stacks | 3 | {bio} |
+ spread-phy | 3 | {bio,bio-phylogeny} |
staden | 3 | {bio} |
- tvc | 3 | {bio} |
- yaha | 3 | {bio} |
- zalign | 3 | {bio,cloud} |
- atropos | 2 | {bio} |
- brig | 2 | {bio} |
- canu | 2 | {bio} |
+ anfo | 2 | {cloud,bio} |
+ arden | 2 | {cloud,bio} |
+ assemblytics | 2 | {bio} |
+ blimps | 2 | {bio} |
cat-bat | 2 | {covid-19,bio} |
- clonalframeml | 2 | {covid-19,bio} |
- cufflinks | 2 | {cloud,bio} |
- delly | 2 | {covid-19,bio} |
- fastml | 2 | {bio} |
- gifticlib | 2 | {imaging-dev} |
- hinge | 2 | {bio} |
+ clonalorigin | 2 | {bio} |
+ embassy-domalign | 2 | {cloud,bio} |
+ embassy-domsearch | 2 | {bio,cloud} |
+ estscan | 2 | {bio} |
+ gatb-core | 2 | {bio} |
intake | 2 | {bio-dev,bio} |
- ipig | 2 | {bio} |
- jmodeltest | 2 | {bio,bio-phylogeny} |
+ jellyfish1 | 2 | {bio} |
libctapimkt | 2 | {practice} |
- libpal-java | 2 | {bio-dev} |
- librdp-taxonomy-tree-java | 2 | {bio-dev} |
libsbml | 2 | {bio-dev} |
- mauve-aligner | 2 | {bio} |
- mhap | 2 | {bio-ngs,bio} |
- paraclu | 2 | {bio,cloud} |
- placnet | 2 | {bio} |
- plasmidid | 2 | {covid-19,bio} |
- plasmidseeker | 2 | {bio} |
- prime-phylo | 2 | {bio,cloud} |
- proalign | 2 | {bio,bio-phylogeny} |
- pscan-chip | 2 | {bio} |
+ logol | 2 | {bio} |
+ microbegps | 2 | {bio} |
+ pbdagcon | 2 | {bio} |
+ perm | 2 | {cloud,bio} |
+ phyutility | 2 | {cloud,bio} |
+ piler | 2 | {bio} |
python-wdlparse | 2 | {bio-dev} |
- qcumber | 2 | {bio} |
- rdp-alignment | 2 | {bio} |
- rdp-classifier | 2 | {bio} |
+ quorum | 2 | {bio} |
+ rtax | 2 | {cloud,bio} |
+ runcircos-gui | 2 | {bio} |
+ saint | 2 | {bio} |
sambamba | 2 | {bio} |
- sga | 2 | {bio} |
+ samblaster | 2 | {bio,covid-19} |
+ segemehl | 2 | {bio} |
+ sibsim4 | 2 | {cloud,bio} |
+ sift | 2 | {bio} |
sight | 2 | {imaging} |
- soapsnp | 2 | {bio} |
- spaced | 2 | {bio} |
- suitename | 2 | {bio} |
- surankco | 2 | {bio} |
- trace2dbest | 2 | {bio} |
- varscan | 2 | {bio,covid-19} |
+ soapaligner | 2 | {bio} |
+ sprai | 2 | {bio} |
+ stacks | 2 | {bio} |
+ tvc | 2 | {bio} |
vienna-rna | 2 | {covid-19,bio} |
+ yaha | 2 | {bio} |
+ zalign | 2 | {bio,cloud} |
acedb | 1 | {cloud,bio} |
+ atropos | 1 | {bio} |
bbmap | 1 | {covid-19,bio} |
+ brig | 1 | {bio} |
bustools | 1 | {bio,covid-19} |
+ canu | 1 | {bio} |
+ clonalframeml | 1 | {covid-19,bio} |
+ cufflinks | 1 | {cloud,bio} |
+ delly | 1 | {covid-19,bio} |
dextractor | 1 | {bio,covid-19} |
emmax | 1 | {bio} |
- fsm-lite | 1 | {bio} |
+ fastml | 1 | {bio} |
+ gifticlib | 1 | {imaging-dev} |
+ hinge | 1 | {bio} |
+ ipig | 1 | {bio} |
+ jmodeltest | 1 | {bio,bio-phylogeny} |
kmerresistance | 1 | {bio} |
libchado-perl | 1 | {bio-dev} |
+ libpal-java | 1 | {bio-dev} |
+ librdp-taxonomy-tree-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- metaphlan2 | 1 | {bio} |
+ mauve-aligner | 1 | {bio} |
+ mhap | 1 | {bio-ngs,bio} |
nanosv | 1 | {covid-19,bio} |
opencfu | 1 | {laboratory} |
orthanc-gdcm | 1 | {imaging} |
oscar | 1 | {practice,data,tools} |
papyrus | 1 | {imaging-dev} |
+ paraclu | 1 | {bio,cloud} |
pigx-rnaseq | 1 | {covid-19,bio} |
pilercr | 1 | {bio} |
pique | 1 | {bio} |
+ placnet | 1 | {bio} |
+ plasmidseeker | 1 | {bio} |
pplacer | 1 | {bio-phylogeny,covid-19,bio} |
+ prime-phylo | 1 | {bio,cloud} |
+ proalign | 1 | {bio,bio-phylogeny} |
+ pscan-chip | 1 | {bio} |
python-bcbio-gff | 1 | {bio-dev} |
+ qcumber | 1 | {bio} |
+ rdp-alignment | 1 | {bio} |
+ rdp-classifier | 1 | {bio} |
samtools-legacy | 1 | {bio-dev} |
- seq-gen | 1 | {bio} |
+ sga | 1 | {bio} |
shovill | 1 | {bio,covid-19} |
simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
skewer | 1 | {bio} |
+ soapsnp | 1 | {bio} |
+ spaced | 1 | {bio} |
spaln | 1 | {bio,covid-19} |
+ suitename | 1 | {bio} |
+ surankco | 1 | {bio} |
svim | 1 | {bio} |
thesias | 1 | {bio,covid-19} |
tophat-recondition | 1 | {covid-19,bio} |
+ trace2dbest | 1 | {bio} |
+ varscan | 1 | {bio,covid-19} |
yanagiba | 1 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
@@ -183,6 +180,7 @@ Last-Update: Sat, 10 Apr 2021 01:42:04 +0000
eegdev | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
fis-gtm | 0 | {his} |
+ fsm-lite | 0 | {bio} |
gatb-core | 0 | {bio-dev} |
htscodecs | 0 | {covid-19,bio-dev} |
libbigwig | 0 | {bio-dev} |
@@ -212,6 +210,7 @@ Last-Update: Sat, 10 Apr 2021 01:42:04 +0000
libseqlib | 0 | {bio-dev} |
libstatgen | 0 | {bio-dev} |
libxdf | 0 | {imaging-dev} |
+ metaphlan2 | 0 | {bio} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
@@ -230,6 +229,7 @@ Last-Update: Sat, 10 Apr 2021 01:42:04 +0000
q2-sample-classifier | 0 | {bio,bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
+ seq-gen | 0 | {bio} |
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
smrtanalysis | 0 | {bio,covid-19} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/75778d3ff1ee919f38aae3ffd31af4f04eacef2a
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/75778d3ff1ee919f38aae3ffd31af4f04eacef2a
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