Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
cdc85dd8 by Andreas Tille at 2021-04-15T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,189 +1,156 @@
-Last-Update: Thu, 15 Apr 2021 01:42:04 +0000
+Last-Update: Thu, 15 Apr 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 197 | {covid-19,imaging} |
+ dcmtk | 198 | {covid-19,imaging} |
orthanc | 94 | {covid-19,practice,imaging} |
orthanc-wsi | 46 | {laboratory,imaging,his,oncology,covid-19,practice} |
gdcm | 45 | {imaging-dev} |
- openslide | 39 | {imaging} |
- amide | 35 | {imaging} |
- dicom3tools | 30 | {imaging} |
+ openslide | 38 | {imaging} |
+ amide | 36 | {imaging} |
+ dicom3tools | 31 | {imaging} |
nipype | 30 | {imaging,imaging-dev} |
- dcm2niix | 25 | {imaging} |
- dicomscope | 21 | {imaging} |
- gdcm | 21 | {covid-19,imaging} |
- htsjdk | 21 | {bio-dev} |
- odin | 19 | {imaging-dev,imaging} |
- nifticlib | 17 | {imaging} |
+ dcm2niix | 24 | {imaging} |
+ htsjdk | 24 | {bio-dev} |
+ dicomscope | 20 | {imaging} |
+ gdcm | 20 | {covid-19,imaging} |
+ odin | 20 | {imaging-dev,imaging} |
minc-tools | 16 | {imaging} |
+ nifticlib | 16 | {imaging} |
gnumed-server | 15 | {practice,covid-19} |
gdcm | 14 | {imaging-dev} |
- pixelmed | 14 | {imaging} |
+ pixelmed | 13 | {imaging} |
dicomnifti | 12 | {imaging} |
invesalius | 12 | {imaging} |
mia | 12 | {imaging} |
orthanc-webviewer | 12 | {imaging} |
vtk-dicom | 12 | {imaging} |
+ insighttoolkit4 | 11 | {imaging-dev} |
adun.app | 10 | {bio} |
- insighttoolkit4 | 10 | {imaging-dev} |
- plastimatch | 10 | {imaging} |
- nifti2dicom | 9 | {imaging} |
+ plastimatch | 9 | {imaging} |
ngs-sdk | 8 | {bio-dev} |
nifti2dicom | 8 | {imaging} |
- melting | 7 | {cloud,bio} |
ngs-sdk | 7 | {bio-dev} |
- salmid | 7 | {bio} |
- treeview | 7 | {bio,bio-phylogeny} |
- biomaj3-cli | 6 | {cloud} |
- king | 6 | {imaging,typesetting} |
- lagan | 6 | {bio} |
+ nifti2dicom | 7 | {imaging} |
libminc | 6 | {imaging-dev} |
- bamkit | 5 | {covid-19,bio} |
+ melting | 6 | {cloud,bio} |
+ ngs-sdk | 6 | {bio-dev} |
+ salmid | 6 | {bio} |
+ treeview | 6 | {bio,bio-phylogeny} |
+ biomaj3-cli | 5 | {cloud} |
dicompyler | 5 | {oncology} |
- ea-utils | 5 | {bio} |
- jebl2 | 5 | {bio-dev} |
+ king | 5 | {imaging,typesetting} |
+ lagan | 5 | {bio} |
obitools | 5 | {bio} |
openslide | 5 | {imaging-dev} |
- bitseq | 4 | {bio} |
- busco | 4 | {covid-19,bio} |
- lamarc | 4 | {bio} |
- libncl | 4 | {bio} |
+ bamkit | 4 | {covid-19,bio} |
+ ea-utils | 4 | {bio} |
+ jebl2 | 4 | {bio-dev} |
librg-utils-perl | 4 | {bio} |
- ngs-sdk | 4 | {bio-dev} |
nifticlib | 4 | {imaging-dev} |
orthanc-dicomweb | 4 | {covid-19,imaging} |
orthanc-mysql | 4 | {imaging} |
- phast | 4 | {bio} |
- salmon | 4 | {bio,covid-19} |
- tracetuner | 4 | {bio} |
bart-view | 3 | {imaging} |
- beast-mcmc | 3 | {bio-phylogeny,bio} |
- biojava-live | 3 | {bio-dev} |
- bio-tradis | 3 | {bio,bio-dev} |
- blasr | 3 | {bio-ngs,bio} |
- ecopcr | 3 | {bio} |
+ bitseq | 3 | {bio} |
+ busco | 3 | {covid-19,bio} |
elastix | 3 | {imaging} |
embassy-domainatrix | 3 | {bio,cloud} |
getdata | 3 | {bio} |
- ghmm | 3 | {bio} |
+ lamarc | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
+ libncl | 3 | {bio} |
orthanc-postgresql | 3 | {imaging} |
- plasmidid | 3 | {covid-19,bio} |
+ phast | 3 | {bio} |
pymia | 3 | {imaging-dev} |
- rambo-k | 3 | {bio} |
- spread-phy | 3 | {bio,bio-phylogeny} |
- staden | 3 | {bio} |
- anfo | 2 | {bio,cloud} |
- arden | 2 | {cloud,bio} |
- assemblytics | 2 | {bio} |
- bbmap | 2 | {covid-19,bio} |
+ salmon | 3 | {bio,covid-19} |
+ tracetuner | 3 | {bio} |
+ beast-mcmc | 2 | {bio-phylogeny,bio} |
+ biojava-live | 2 | {bio-dev} |
+ bio-tradis | 2 | {bio,bio-dev} |
+ blasr | 2 | {bio-ngs,bio} |
blimps | 2 | {bio} |
- cat-bat | 2 | {covid-19,bio} |
- clonalorigin | 2 | {bio} |
+ ecopcr | 2 | {bio} |
embassy-domalign | 2 | {cloud,bio} |
embassy-domsearch | 2 | {bio,cloud} |
- estscan | 2 | {bio} |
- gatb-core | 2 | {bio} |
+ ghmm | 2 | {bio} |
intake | 2 | {bio-dev,bio} |
jellyfish1 | 2 | {bio} |
libctapimkt | 2 | {practice} |
libsbml | 2 | {bio-dev} |
- logol | 2 | {bio} |
- microbegps | 2 | {bio} |
- pbdagcon | 2 | {bio} |
- perm | 2 | {bio,cloud} |
- phyutility | 2 | {cloud,bio} |
- piler | 2 | {bio} |
+ plasmidid | 2 | {covid-19,bio} |
python-wdlparse | 2 | {bio-dev} |
- quorum | 2 | {bio} |
- rtax | 2 | {bio,cloud} |
- runcircos-gui | 2 | {bio} |
- saint | 2 | {bio} |
- sambamba | 2 | {bio} |
- samblaster | 2 | {bio,covid-19} |
- segemehl | 2 | {bio} |
- sibsim4 | 2 | {cloud,bio} |
+ rambo-k | 2 | {bio} |
sift | 2 | {bio} |
sight | 2 | {imaging} |
simpleitk | 2 | {imaging-dev} |
- soapaligner | 2 | {bio} |
- sprai | 2 | {bio} |
- stacks | 2 | {bio} |
- tvc | 2 | {bio} |
+ spread-phy | 2 | {bio,bio-phylogeny} |
+ staden | 2 | {bio} |
vienna-rna | 2 | {bio,covid-19} |
- yaha | 2 | {bio} |
- zalign | 2 | {bio,cloud} |
acedb | 1 | {bio,cloud} |
- atropos | 1 | {bio} |
- brig | 1 | {bio} |
- bustools | 1 | {covid-19,bio} |
- canu | 1 | {bio} |
- clonalframeml | 1 | {covid-19,bio} |
+ anfo | 1 | {bio,cloud} |
+ arden | 1 | {cloud,bio} |
+ assemblytics | 1 | {bio} |
+ bbmap | 1 | {covid-19,bio} |
+ cat-bat | 1 | {covid-19,bio} |
+ clonalorigin | 1 | {bio} |
cufflinks | 1 | {cloud,bio} |
- delly | 1 | {covid-19,bio} |
- dextractor | 1 | {bio,covid-19} |
- emmax | 1 | {bio} |
- fastml | 1 | {bio} |
+ estscan | 1 | {bio} |
+ gatb-core | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
- hinge | 1 | {bio} |
- ipig | 1 | {bio} |
- jmodeltest | 1 | {bio-phylogeny,bio} |
- kmerresistance | 1 | {bio} |
libchado-perl | 1 | {bio-dev} |
- libpal-java | 1 | {bio-dev} |
- librdp-taxonomy-tree-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- mauve-aligner | 1 | {bio} |
- mhap | 1 | {bio,bio-ngs} |
- nanosv | 1 | {covid-19,bio} |
+ logol | 1 | {bio} |
+ microbegps | 1 | {bio} |
opencfu | 1 | {laboratory} |
orthanc-gdcm | 1 | {imaging} |
oscar | 1 | {data,practice,tools} |
papyrus | 1 | {imaging-dev} |
- paraclu | 1 | {bio,cloud} |
- pigx-rnaseq | 1 | {bio,covid-19} |
- pilercr | 1 | {bio} |
- pique | 1 | {bio} |
- placnet | 1 | {bio} |
- plasmidseeker | 1 | {bio} |
- pplacer | 1 | {bio-phylogeny,bio,covid-19} |
- prime-phylo | 1 | {cloud,bio} |
- proalign | 1 | {bio,bio-phylogeny} |
- pscan-chip | 1 | {bio} |
- python-bcbio-gff | 1 | {bio-dev} |
+ pbdagcon | 1 | {bio} |
+ perm | 1 | {bio,cloud} |
+ phyutility | 1 | {cloud,bio} |
+ piler | 1 | {bio} |
qcumber | 1 | {bio} |
- rdp-alignment | 1 | {bio} |
- rdp-classifier | 1 | {bio} |
+ quorum | 1 | {bio} |
+ rtax | 1 | {bio,cloud} |
+ runcircos-gui | 1 | {bio} |
+ saint | 1 | {bio} |
+ sambamba | 1 | {bio} |
+ samblaster | 1 | {bio,covid-19} |
samtools-legacy | 1 | {bio-dev} |
- sga | 1 | {bio} |
- shovill | 1 | {bio,covid-19} |
+ segemehl | 1 | {bio} |
+ sibsim4 | 1 | {cloud,bio} |
simrisc | 1 | {oncology} |
- skesa | 1 | {bio} |
- skewer | 1 | {bio} |
- soapsnp | 1 | {bio} |
- spaced | 1 | {bio} |
- spaln | 1 | {covid-19,bio} |
- suitename | 1 | {bio} |
- surankco | 1 | {bio} |
- svim | 1 | {bio} |
- thesias | 1 | {bio,covid-19} |
- tophat-recondition | 1 | {covid-19,bio} |
- trace2dbest | 1 | {bio} |
- varscan | 1 | {covid-19,bio} |
- yanagiba | 1 | {bio,covid-19} |
+ soapaligner | 1 | {bio} |
+ sprai | 1 | {bio} |
+ stacks | 1 | {bio} |
+ tvc | 1 | {bio} |
+ yaha | 1 | {bio} |
+ zalign | 1 | {bio,cloud} |
+ atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
+ brig | 0 | {bio} |
+ bustools | 0 | {covid-19,bio} |
camp | 0 | {imaging-dev} |
+ canu | 0 | {bio} |
+ clonalframeml | 0 | {covid-19,bio} |
ctn | 0 | {imaging-dev} |
+ delly | 0 | {covid-19,bio} |
+ dextractor | 0 | {bio,covid-19} |
eegdev | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
+ emmax | 0 | {bio} |
+ fastml | 0 | {bio} |
fis-gtm | 0 | {his} |
fsm-lite | 0 | {bio} |
gatb-core | 0 | {bio-dev} |
+ hinge | 0 | {bio} |
htscodecs | 0 | {covid-19,bio-dev} |
+ ipig | 0 | {bio} |
+ jmodeltest | 0 | {bio-phylogeny,bio} |
+ kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbio-mage-utils-perl | 0 | {bio-dev} |
@@ -206,36 +173,69 @@ Last-Update: Thu, 15 Apr 2021 01:42:04 +0000
libmialm | 0 | {imaging-dev} |
libmuscle | 0 | {bio-dev} |
libncl | 0 | {bio-dev} |
+ libpal-java | 0 | {bio-dev} |
libpsortb | 0 | {bio-dev} |
libqes | 0 | {bio-dev} |
+ librdp-taxonomy-tree-java | 0 | {bio-dev} |
libseqlib | 0 | {bio-dev} |
libstatgen | 0 | {bio-dev} |
libxdf | 0 | {imaging-dev} |
+ mauve-aligner | 0 | {bio} |
metaphlan2 | 0 | {bio} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
+ mhap | 0 | {bio,bio-ngs} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
milib | 0 | {covid-19,bio-dev} |
+ nanosv | 0 | {covid-19,bio} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
+ paraclu | 0 | {bio,cloud} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
+ pigx-rnaseq | 0 | {bio,covid-19} |
+ pilercr | 0 | {bio} |
+ pique | 0 | {bio} |
+ placnet | 0 | {bio} |
+ plasmidseeker | 0 | {bio} |
+ pplacer | 0 | {bio-phylogeny,bio,covid-19} |
+ prime-phylo | 0 | {cloud,bio} |
+ proalign | 0 | {bio,bio-phylogeny} |
+ pscan-chip | 0 | {bio} |
+ python-bcbio-gff | 0 | {bio-dev} |
python-epimodels | 0 | {epi} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-seqcluster | 0 | {bio} |
+ rdp-alignment | 0 | {bio} |
+ rdp-classifier | 0 | {bio} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
+ sga | 0 | {bio} |
+ shovill | 0 | {bio,covid-19} |
simpleitk | 0 | {imaging-dev} |
+ skesa | 0 | {bio} |
+ skewer | 0 | {bio} |
smrtanalysis | 0 | {bio,covid-19} |
+ soapsnp | 0 | {bio} |
+ spaced | 0 | {bio} |
+ spaln | 0 | {covid-19,bio} |
srf | 0 | {bio-dev} |
+ suitename | 0 | {bio} |
+ surankco | 0 | {bio} |
+ svim | 0 | {bio} |
+ thesias | 0 | {bio,covid-19} |
+ tophat-recondition | 0 | {covid-19,bio} |
+ trace2dbest | 0 | {bio} |
varna | 0 | {bio} |
+ varscan | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
+ yanagiba | 0 | {bio,covid-19} |
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
q2-sample-classifier | -1 | {bio-dev,bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/cdc85dd854ff0bd3b60c7b47a398ec9d641b7234
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/cdc85dd854ff0bd3b60c7b47a398ec9d641b7234
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20210415/fbea7bd4/attachment-0001.htm>