Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
e45e748d by Andreas Tille at 2021-04-18T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,36 +1,37 @@
-Last-Update: Sun, 18 Apr 2021 01:42:04 +0000
+Last-Update: Sun, 18 Apr 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 199 | {covid-19,imaging} |
- orthanc | 98 | {covid-19,practice,imaging} |
- orthanc-wsi | 48 | {laboratory,imaging,his,oncology,covid-19,practice} |
- gdcm | 44 | {imaging-dev} |
+ dcmtk | 198 | {covid-19,imaging} |
+ orthanc | 100 | {covid-19,practice,imaging} |
+ orthanc-wsi | 49 | {laboratory,imaging,his,oncology,covid-19,practice} |
+ gdcm | 45 | {imaging-dev} |
openslide | 37 | {imaging} |
- amide | 34 | {imaging} |
- dicom3tools | 31 | {imaging} |
- nipype | 30 | {imaging,imaging-dev} |
- htsjdk | 26 | {bio-dev} |
- dicomscope | 23 | {imaging} |
- dcm2niix | 22 | {imaging} |
+ amide | 35 | {imaging} |
+ dicom3tools | 32 | {imaging} |
+ nipype | 29 | {imaging,imaging-dev} |
+ htsjdk | 27 | {bio-dev} |
+ dicomscope | 24 | {imaging} |
+ dcm2niix | 20 | {imaging} |
gdcm | 20 | {covid-19,imaging} |
odin | 19 | {imaging-dev,imaging} |
- minc-tools | 16 | {imaging} |
- nifticlib | 16 | {imaging} |
- gdcm | 15 | {imaging-dev} |
- gnumed-server | 15 | {practice,covid-19} |
- invesalius | 13 | {imaging} |
- dicomnifti | 12 | {imaging} |
- mia | 12 | {imaging} |
+ minc-tools | 17 | {imaging} |
+ nifticlib | 17 | {imaging} |
+ gdcm | 16 | {imaging-dev} |
+ gnumed-server | 14 | {practice,covid-19} |
+ dicomnifti | 13 | {imaging} |
+ mia | 13 | {imaging} |
+ adun.app | 12 | {bio} |
+ invesalius | 12 | {imaging} |
orthanc-webviewer | 12 | {imaging} |
pixelmed | 12 | {imaging} |
vtk-dicom | 12 | {imaging} |
- adun.app | 10 | {bio} |
+ ngs-sdk | 11 | {bio-dev} |
+ plastimatch | 11 | {imaging} |
insighttoolkit4 | 10 | {imaging-dev} |
- ngs-sdk | 9 | {bio-dev} |
+ nifti2dicom | 10 | {imaging} |
nifti2dicom | 9 | {imaging} |
- plastimatch | 9 | {imaging} |
- nifti2dicom | 8 | {imaging} |
+ treeview | 8 | {bio,bio-phylogeny} |
dicompyler | 7 | {oncology} |
ngs-sdk | 7 | {bio-dev} |
lagan | 6 | {bio} |
@@ -38,120 +39,132 @@ Last-Update: Sun, 18 Apr 2021 01:42:04 +0000
melting | 6 | {cloud,bio} |
ngs-sdk | 6 | {bio-dev} |
salmid | 6 | {bio} |
- treeview | 6 | {bio,bio-phylogeny} |
biomaj3-cli | 5 | {cloud} |
+ jebl2 | 5 | {bio-dev} |
king | 5 | {imaging,typesetting} |
+ librg-utils-perl | 5 | {bio} |
obitools | 5 | {bio} |
openslide | 5 | {imaging-dev} |
- bamkit | 4 | {covid-19,bio} |
- jebl2 | 4 | {bio-dev} |
- librg-utils-perl | 4 | {bio} |
+ bart-view | 4 | {imaging} |
+ embassy-domainatrix | 4 | {bio,cloud} |
+ libncl | 4 | {bio} |
nifticlib | 4 | {imaging-dev} |
orthanc-dicomweb | 4 | {covid-19,imaging} |
orthanc-mysql | 4 | {imaging} |
- bart-view | 3 | {imaging} |
+ staden | 4 | {bio} |
+ bamkit | 3 | {covid-19,bio} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
+ biojava-live | 3 | {bio-dev} |
bitseq | 3 | {bio} |
+ blasr | 3 | {bio-ngs,bio} |
busco | 3 | {covid-19,bio} |
ea-utils | 3 | {bio} |
+ ecopcr | 3 | {bio} |
elastix | 3 | {imaging} |
- embassy-domainatrix | 3 | {bio,cloud} |
+ embassy-domalign | 3 | {cloud,bio} |
+ embassy-domsearch | 3 | {bio,cloud} |
getdata | 3 | {bio} |
+ jellyfish1 | 3 | {bio} |
lamarc | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
- libncl | 3 | {bio} |
libsbml | 3 | {bio-dev} |
orthanc-postgresql | 3 | {imaging} |
phast | 3 | {bio} |
pymia | 3 | {imaging-dev} |
- staden | 3 | {bio} |
+ rambo-k | 3 | {bio} |
+ salmon | 3 | {bio,covid-19} |
+ spread-phy | 3 | {bio,bio-phylogeny} |
tracetuner | 3 | {bio} |
- beast-mcmc | 2 | {bio-phylogeny,bio} |
- biojava-live | 2 | {bio-dev} |
+ anfo | 2 | {bio,cloud} |
+ arden | 2 | {cloud,bio} |
bio-tradis | 2 | {bio,bio-dev} |
- blasr | 2 | {bio-ngs,bio} |
blimps | 2 | {bio} |
- ecopcr | 2 | {bio} |
- embassy-domalign | 2 | {cloud,bio} |
- embassy-domsearch | 2 | {bio,cloud} |
+ gatb-core | 2 | {bio} |
ghmm | 2 | {bio} |
- jellyfish1 | 2 | {bio} |
libctapimkt | 2 | {practice} |
+ libpal-java | 2 | {bio-dev} |
+ microbegps | 2 | {bio} |
opencfu | 2 | {laboratory} |
papyrus | 2 | {imaging-dev} |
+ pbdagcon | 2 | {bio} |
+ perm | 2 | {bio,cloud} |
+ phyutility | 2 | {cloud,bio} |
+ piler | 2 | {bio} |
plasmidid | 2 | {covid-19,bio} |
python-wdlparse | 2 | {bio-dev} |
- rambo-k | 2 | {bio} |
- salmon | 2 | {bio,covid-19} |
+ rtax | 2 | {bio,cloud} |
+ saint | 2 | {bio} |
samtools-legacy | 2 | {bio-dev} |
+ sibsim4 | 2 | {cloud,bio} |
sift | 2 | {bio} |
sight | 2 | {imaging} |
simpleitk | 2 | {imaging-dev} |
- spread-phy | 2 | {bio,bio-phylogeny} |
+ sprai | 2 | {bio} |
+ stacks | 2 | {bio} |
vienna-rna | 2 | {bio,covid-19} |
+ zalign | 2 | {bio,cloud} |
acedb | 1 | {bio,cloud} |
- anfo | 1 | {bio,cloud} |
- arden | 1 | {cloud,bio} |
assemblytics | 1 | {bio} |
bbmap | 1 | {covid-19,bio} |
+ brig | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
clonalorigin | 1 | {bio} |
ctn | 1 | {imaging-dev} |
cufflinks | 1 | {cloud,bio} |
eegdev | 1 | {imaging-dev} |
+ emboss-explorer | 1 | {bio} |
estscan | 1 | {bio} |
- gatb-core | 1 | {bio} |
+ fastml | 1 | {bio} |
+ fsm-lite | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
intake | 1 | {bio-dev,bio} |
+ ipig | 1 | {bio} |
+ jmodeltest | 1 | {bio-phylogeny,bio} |
libchado-perl | 1 | {bio-dev} |
- libpal-java | 1 | {bio-dev} |
+ librdp-taxonomy-tree-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
logol | 1 | {bio} |
- microbegps | 1 | {bio} |
+ mauve-aligner | 1 | {bio} |
+ metaphlan2 | 1 | {bio} |
+ mhap | 1 | {bio,bio-ngs} |
orthanc-gdcm | 1 | {imaging} |
oscar | 1 | {data,practice,tools} |
- pbdagcon | 1 | {bio} |
- perm | 1 | {bio,cloud} |
- phyutility | 1 | {cloud,bio} |
- piler | 1 | {bio} |
+ paraclu | 1 | {bio,cloud} |
+ placnet | 1 | {bio} |
+ prime-phylo | 1 | {cloud,bio} |
+ proalign | 1 | {bio,bio-phylogeny} |
qcumber | 1 | {bio} |
quorum | 1 | {bio} |
- rtax | 1 | {bio,cloud} |
+ rdp-alignment | 1 | {bio} |
+ rdp-classifier | 1 | {bio} |
runcircos-gui | 1 | {bio} |
- saint | 1 | {bio} |
sambamba | 1 | {bio} |
samblaster | 1 | {bio,covid-19} |
segemehl | 1 | {bio} |
- sibsim4 | 1 | {cloud,bio} |
+ sga | 1 | {bio} |
simrisc | 1 | {oncology} |
soapaligner | 1 | {bio} |
- sprai | 1 | {bio} |
- stacks | 1 | {bio} |
+ spaced | 1 | {bio} |
+ suitename | 1 | {bio} |
tvc | 1 | {bio} |
vtk-dicom | 1 | {imaging-dev} |
yaha | 1 | {bio} |
- zalign | 1 | {bio,cloud} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
- brig | 0 | {bio} |
bustools | 0 | {covid-19,bio} |
camp | 0 | {imaging-dev} |
canu | 0 | {bio} |
clonalframeml | 0 | {covid-19,bio} |
delly | 0 | {covid-19,bio} |
dextractor | 0 | {bio,covid-19} |
- emboss-explorer | 0 | {bio} |
emmax | 0 | {bio} |
- fastml | 0 | {bio} |
fis-gtm | 0 | {his} |
- fsm-lite | 0 | {bio} |
gatb-core | 0 | {bio-dev} |
hinge | 0 | {bio} |
htscodecs | 0 | {covid-19,bio-dev} |
- ipig | 0 | {bio} |
- jmodeltest | 0 | {bio-phylogeny,bio} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -177,15 +190,11 @@ Last-Update: Sun, 18 Apr 2021 01:42:04 +0000
libncl | 0 | {bio-dev} |
libpsortb | 0 | {bio-dev} |
libqes | 0 | {bio-dev} |
- librdp-taxonomy-tree-java | 0 | {bio-dev} |
libseqlib | 0 | {bio-dev} |
libstatgen | 0 | {bio-dev} |
libxdf | 0 | {imaging-dev} |
- mauve-aligner | 0 | {bio} |
- metaphlan2 | 0 | {bio} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
- mhap | 0 | {bio,bio-ngs} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
milib | 0 | {covid-19,bio-dev} |
@@ -194,39 +203,30 @@ Last-Update: Sun, 18 Apr 2021 01:42:04 +0000
nifticlib | 0 | {imaging-dev} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
- paraclu | 0 | {bio,cloud} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
pigx-rnaseq | 0 | {bio,covid-19} |
pilercr | 0 | {bio} |
pique | 0 | {bio} |
- placnet | 0 | {bio} |
plasmidseeker | 0 | {bio} |
pplacer | 0 | {bio-phylogeny,bio,covid-19} |
- prime-phylo | 0 | {cloud,bio} |
- proalign | 0 | {bio,bio-phylogeny} |
pscan-chip | 0 | {bio} |
python-bcbio-gff | 0 | {bio-dev} |
python-epimodels | 0 | {epi} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {bio-dev,covid-19} |
- rdp-alignment | 0 | {bio} |
- rdp-classifier | 0 | {bio} |
+ python-seqcluster | 0 | {bio} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
- sga | 0 | {bio} |
shovill | 0 | {bio,covid-19} |
simpleitk | 0 | {imaging-dev} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {bio,covid-19} |
soapsnp | 0 | {bio} |
- spaced | 0 | {bio} |
spaln | 0 | {covid-19,bio} |
srf | 0 | {bio-dev} |
- suitename | 0 | {bio} |
surankco | 0 | {bio} |
svim | 0 | {bio} |
thesias | 0 | {bio,covid-19} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e45e748d7554076fc3557cb1fc41a13ba07e6c6c
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