Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
c9dbe0c9 by Andreas Tille at 2021-04-28T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,107 +1,113 @@
-Last-Update: Wed, 28 Apr 2021 01:42:04 +0000
+Last-Update: Wed, 28 Apr 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 178 | {covid-19,imaging} |
- orthanc | 92 | {covid-19,practice,imaging} |
+ dcmtk | 177 | {covid-19,imaging} |
+ orthanc | 93 | {covid-19,practice,imaging} |
orthanc-wsi | 49 | {laboratory,imaging,his,oncology,covid-19,practice} |
- gdcm | 47 | {imaging-dev} |
+ gdcm | 46 | {imaging-dev} |
openslide | 43 | {imaging} |
- amide | 37 | {imaging} |
- nipype | 35 | {imaging,imaging-dev} |
+ amide | 36 | {imaging} |
+ nipype | 36 | {imaging,imaging-dev} |
dicom3tools | 32 | {imaging} |
- dicomscope | 28 | {imaging} |
- htsjdk | 25 | {bio-dev} |
- dcm2niix | 22 | {imaging} |
+ dicomscope | 27 | {imaging} |
+ htsjdk | 27 | {bio-dev} |
+ dcm2niix | 20 | {imaging} |
gdcm | 17 | {covid-19,imaging} |
odin | 17 | {imaging-dev,imaging} |
gdcm | 15 | {imaging-dev} |
minc-tools | 15 | {imaging} |
- pixelmed | 13 | {imaging} |
+ pixelmed | 14 | {imaging} |
dicomnifti | 12 | {imaging} |
gnumed-server | 12 | {practice,covid-19} |
invesalius | 12 | {imaging} |
vtk-dicom | 12 | {imaging} |
- adun.app | 11 | {bio} |
insighttoolkit4 | 11 | {imaging-dev} |
mia | 11 | {imaging} |
+ ngs-sdk | 11 | {bio-dev} |
nifticlib | 11 | {imaging} |
orthanc-webviewer | 11 | {imaging} |
- ngs-sdk | 9 | {bio-dev} |
+ adun.app | 10 | {bio} |
nifti2dicom | 9 | {imaging} |
plastimatch | 9 | {imaging} |
+ ngs-sdk | 8 | {bio-dev} |
nifti2dicom | 8 | {imaging} |
dicompyler | 7 | {oncology} |
libminc | 7 | {imaging-dev} |
- ngs-sdk | 7 | {bio-dev} |
treeview | 7 | {bio,bio-phylogeny} |
+ bamkit | 6 | {covid-19,bio} |
+ blasr | 6 | {bio-ngs,bio} |
+ librg-utils-perl | 6 | {bio} |
+ ngs-sdk | 6 | {bio-dev} |
salmid | 6 | {bio} |
- bamkit | 5 | {covid-19,bio} |
- blasr | 5 | {bio-ngs,bio} |
+ ea-utils | 5 | {bio} |
+ embassy-domainatrix | 5 | {bio,cloud} |
jebl2 | 5 | {bio-dev} |
lagan | 5 | {bio} |
- librg-utils-perl | 5 | {bio} |
melting | 5 | {cloud,bio} |
- ngs-sdk | 5 | {bio-dev} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
rambo-k | 5 | {bio} |
bart-view | 4 | {imaging} |
biomaj3-cli | 4 | {cloud} |
busco | 4 | {covid-19,bio} |
- ea-utils | 4 | {bio} |
- embassy-domainatrix | 4 | {bio,cloud} |
+ ecopcr | 4 | {bio} |
+ embassy-domalign | 4 | {cloud,bio} |
+ embassy-domsearch | 4 | {bio,cloud} |
king | 4 | {imaging,typesetting} |
nifticlib | 4 | {imaging-dev} |
obitools | 4 | {bio} |
+ openslide | 4 | {imaging-dev} |
pymia | 4 | {imaging-dev} |
salmon | 4 | {bio,covid-19} |
beast-mcmc | 3 | {bio-phylogeny,bio} |
biojava-live | 3 | {bio-dev} |
bitseq | 3 | {bio} |
- ecopcr | 3 | {bio} |
elastix | 3 | {imaging} |
- embassy-domalign | 3 | {cloud,bio} |
- embassy-domsearch | 3 | {bio,cloud} |
getdata | 3 | {bio} |
jellyfish1 | 3 | {bio} |
- lamarc | 3 | {bio} |
libncl | 3 | {bio} |
- openslide | 3 | {imaging-dev} |
+ opencfu | 3 | {laboratory} |
orthanc-mysql | 3 | {imaging} |
orthanc-postgresql | 3 | {imaging} |
oscar | 3 | {data,practice,tools} |
pbdagcon | 3 | {bio} |
+ perm | 3 | {bio,cloud} |
phast | 3 | {bio} |
plasmidid | 3 | {covid-19,bio} |
+ saint | 3 | {bio} |
+ sibsim4 | 3 | {cloud,bio} |
+ stacks | 3 | {bio} |
staden | 3 | {bio} |
tracetuner | 3 | {bio} |
anfo | 2 | {bio,cloud} |
arden | 2 | {cloud,bio} |
bio-tradis | 2 | {bio,bio-dev} |
blimps | 2 | {bio} |
+ fsm-lite | 2 | {bio} |
gatb-core | 2 | {bio} |
ghmm | 2 | {bio} |
+ lamarc | 2 | {bio} |
libctapimkt | 2 | {practice} |
libdivsufsort | 2 | {bio-dev} |
libpal-java | 2 | {bio-dev} |
libsbml | 2 | {bio-dev} |
+ metaphlan2 | 2 | {bio} |
microbegps | 2 | {bio} |
- opencfu | 2 | {laboratory} |
papyrus | 2 | {imaging-dev} |
- perm | 2 | {bio,cloud} |
+ paraclu | 2 | {bio,cloud} |
phyutility | 2 | {cloud,bio} |
piler | 2 | {bio} |
qcumber | 2 | {bio} |
rtax | 2 | {bio,cloud} |
- saint | 2 | {bio} |
samtools-legacy | 2 | {bio-dev} |
- sibsim4 | 2 | {cloud,bio} |
sift | 2 | {bio} |
sight | 2 | {imaging} |
+ spaced | 2 | {bio} |
sprai | 2 | {bio} |
spread-phy | 2 | {bio,bio-phylogeny} |
- stacks | 2 | {bio} |
+ suitename | 2 | {bio} |
zalign | 2 | {bio,cloud} |
+ acedb | 1 | {bio,cloud} |
assemblytics | 1 | {bio} |
bbmap | 1 | {covid-19,bio} |
brig | 1 | {bio} |
@@ -113,9 +119,7 @@ Last-Update: Wed, 28 Apr 2021 01:42:04 +0000
emboss-explorer | 1 | {bio} |
estscan | 1 | {bio} |
fastml | 1 | {bio} |
- fsm-lite | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
- intake | 1 | {bio-dev,bio} |
ipig | 1 | {bio} |
jmodeltest | 1 | {bio-phylogeny,bio} |
libchado-perl | 1 | {bio-dev} |
@@ -124,10 +128,8 @@ Last-Update: Wed, 28 Apr 2021 01:42:04 +0000
libvistaio | 1 | {imaging-dev} |
logol | 1 | {bio} |
mauve-aligner | 1 | {bio} |
- metaphlan2 | 1 | {bio} |
mhap | 1 | {bio,bio-ngs} |
orthanc-gdcm | 1 | {imaging} |
- paraclu | 1 | {bio,cloud} |
placnet | 1 | {bio} |
prime-phylo | 1 | {cloud,bio} |
proalign | 1 | {bio,bio-phylogeny} |
@@ -142,14 +144,11 @@ Last-Update: Wed, 28 Apr 2021 01:42:04 +0000
sga | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
soapaligner | 1 | {bio} |
- spaced | 1 | {bio} |
- suitename | 1 | {bio} |
tvc | 1 | {bio} |
varna | 1 | {bio} |
vienna-rna | 1 | {bio,covid-19} |
vtk-dicom | 1 | {imaging-dev} |
yaha | 1 | {bio} |
- acedb | 0 | {bio,cloud} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
@@ -166,6 +165,7 @@ Last-Update: Wed, 28 Apr 2021 01:42:04 +0000
gatb-core | 0 | {bio-dev} |
hinge | 0 | {bio} |
htscodecs | 0 | {covid-19,bio-dev} |
+ intake | 0 | {bio-dev,bio} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -214,8 +214,8 @@ Last-Update: Wed, 28 Apr 2021 01:42:04 +0000
pscan-chip | 0 | {bio} |
python-bcbio-gff | 0 | {bio-dev} |
python-epimodels | 0 | {epi} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-seqcluster | 0 | {bio} |
q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c9dbe0c9c27d66a4ddb1259cfccadfb35b40e67c
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c9dbe0c9c27d66a4ddb1259cfccadfb35b40e67c
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