Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
551e7f9c by Andreas Tille at 2021-04-29T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,87 +1,79 @@
-Last-Update: Thu, 29 Apr 2021 01:42:04 +0000
+Last-Update: Thu, 29 Apr 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 177 | {covid-19,imaging} |
- orthanc | 93 | {covid-19,practice,imaging} |
- orthanc-wsi | 49 | {laboratory,imaging,his,oncology,covid-19,practice} |
- gdcm | 46 | {imaging-dev} |
- openslide | 43 | {imaging} |
- amide | 36 | {imaging} |
- nipype | 36 | {imaging,imaging-dev} |
- dicom3tools | 32 | {imaging} |
+ dcmtk | 174 | {covid-19,imaging} |
+ orthanc | 90 | {covid-19,practice,imaging} |
+ orthanc-wsi | 48 | {laboratory,imaging,his,oncology,covid-19,practice} |
+ gdcm | 47 | {imaging-dev} |
+ openslide | 42 | {imaging} |
+ nipype | 37 | {imaging,imaging-dev} |
+ amide | 34 | {imaging} |
+ dicom3tools | 31 | {imaging} |
dicomscope | 27 | {imaging} |
- htsjdk | 27 | {bio-dev} |
+ htsjdk | 26 | {bio-dev} |
dcm2niix | 20 | {imaging} |
gdcm | 17 | {covid-19,imaging} |
odin | 17 | {imaging-dev,imaging} |
gdcm | 15 | {imaging-dev} |
- minc-tools | 15 | {imaging} |
- pixelmed | 14 | {imaging} |
+ minc-tools | 14 | {imaging} |
+ gnumed-server | 13 | {practice,covid-19} |
+ pixelmed | 13 | {imaging} |
dicomnifti | 12 | {imaging} |
- gnumed-server | 12 | {practice,covid-19} |
invesalius | 12 | {imaging} |
+ ngs-sdk | 12 | {bio-dev} |
vtk-dicom | 12 | {imaging} |
insighttoolkit4 | 11 | {imaging-dev} |
- mia | 11 | {imaging} |
- ngs-sdk | 11 | {bio-dev} |
nifticlib | 11 | {imaging} |
orthanc-webviewer | 11 | {imaging} |
- adun.app | 10 | {bio} |
+ mia | 10 | {imaging} |
nifti2dicom | 9 | {imaging} |
plastimatch | 9 | {imaging} |
- ngs-sdk | 8 | {bio-dev} |
+ adun.app | 8 | {bio} |
nifti2dicom | 8 | {imaging} |
dicompyler | 7 | {oncology} |
- libminc | 7 | {imaging-dev} |
+ ngs-sdk | 7 | {bio-dev} |
treeview | 7 | {bio,bio-phylogeny} |
bamkit | 6 | {covid-19,bio} |
blasr | 6 | {bio-ngs,bio} |
+ libminc | 6 | {imaging-dev} |
librg-utils-perl | 6 | {bio} |
- ngs-sdk | 6 | {bio-dev} |
salmid | 6 | {bio} |
ea-utils | 5 | {bio} |
embassy-domainatrix | 5 | {bio,cloud} |
- jebl2 | 5 | {bio-dev} |
- lagan | 5 | {bio} |
melting | 5 | {cloud,bio} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
rambo-k | 5 | {bio} |
bart-view | 4 | {imaging} |
- biomaj3-cli | 4 | {cloud} |
busco | 4 | {covid-19,bio} |
- ecopcr | 4 | {bio} |
- embassy-domalign | 4 | {cloud,bio} |
embassy-domsearch | 4 | {bio,cloud} |
+ jebl2 | 4 | {bio-dev} |
king | 4 | {imaging,typesetting} |
- nifticlib | 4 | {imaging-dev} |
- obitools | 4 | {bio} |
openslide | 4 | {imaging-dev} |
pymia | 4 | {imaging-dev} |
salmon | 4 | {bio,covid-19} |
- beast-mcmc | 3 | {bio-phylogeny,bio} |
- biojava-live | 3 | {bio-dev} |
- bitseq | 3 | {bio} |
+ stacks | 4 | {bio} |
+ biomaj3-cli | 3 | {cloud} |
+ ecopcr | 3 | {bio} |
elastix | 3 | {imaging} |
+ embassy-domalign | 3 | {cloud,bio} |
getdata | 3 | {bio} |
jellyfish1 | 3 | {bio} |
- libncl | 3 | {bio} |
+ lagan | 3 | {bio} |
+ nifticlib | 3 | {imaging-dev} |
+ obitools | 3 | {bio} |
opencfu | 3 | {laboratory} |
orthanc-mysql | 3 | {imaging} |
orthanc-postgresql | 3 | {imaging} |
oscar | 3 | {data,practice,tools} |
pbdagcon | 3 | {bio} |
perm | 3 | {bio,cloud} |
- phast | 3 | {bio} |
plasmidid | 3 | {covid-19,bio} |
saint | 3 | {bio} |
sibsim4 | 3 | {cloud,bio} |
- stacks | 3 | {bio} |
- staden | 3 | {bio} |
- tracetuner | 3 | {bio} |
- anfo | 2 | {bio,cloud} |
- arden | 2 | {cloud,bio} |
- bio-tradis | 2 | {bio,bio-dev} |
+ beast-mcmc | 2 | {bio-phylogeny,bio} |
+ biojava-live | 2 | {bio-dev} |
+ bitseq | 2 | {bio} |
blimps | 2 | {bio} |
fsm-lite | 2 | {bio} |
gatb-core | 2 | {bio} |
@@ -89,27 +81,31 @@ Last-Update: Thu, 29 Apr 2021 01:42:04 +0000
lamarc | 2 | {bio} |
libctapimkt | 2 | {practice} |
libdivsufsort | 2 | {bio-dev} |
+ libncl | 2 | {bio} |
libpal-java | 2 | {bio-dev} |
libsbml | 2 | {bio-dev} |
metaphlan2 | 2 | {bio} |
microbegps | 2 | {bio} |
papyrus | 2 | {imaging-dev} |
paraclu | 2 | {bio,cloud} |
+ phast | 2 | {bio} |
phyutility | 2 | {cloud,bio} |
piler | 2 | {bio} |
qcumber | 2 | {bio} |
rtax | 2 | {bio,cloud} |
- samtools-legacy | 2 | {bio-dev} |
sift | 2 | {bio} |
sight | 2 | {imaging} |
spaced | 2 | {bio} |
sprai | 2 | {bio} |
spread-phy | 2 | {bio,bio-phylogeny} |
+ staden | 2 | {bio} |
suitename | 2 | {bio} |
- zalign | 2 | {bio,cloud} |
+ tracetuner | 2 | {bio} |
acedb | 1 | {bio,cloud} |
- assemblytics | 1 | {bio} |
+ anfo | 1 | {bio,cloud} |
+ arden | 1 | {cloud,bio} |
bbmap | 1 | {covid-19,bio} |
+ bio-tradis | 1 | {bio,bio-dev} |
brig | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
clonalorigin | 1 | {bio} |
@@ -117,7 +113,6 @@ Last-Update: Thu, 29 Apr 2021 01:42:04 +0000
cufflinks | 1 | {cloud,bio} |
eegdev | 1 | {imaging-dev} |
emboss-explorer | 1 | {bio} |
- estscan | 1 | {bio} |
fastml | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
ipig | 1 | {bio} |
@@ -125,8 +120,6 @@ Last-Update: Thu, 29 Apr 2021 01:42:04 +0000
libchado-perl | 1 | {bio-dev} |
libmuscle | 1 | {bio-dev} |
librdp-taxonomy-tree-java | 1 | {bio-dev} |
- libvistaio | 1 | {imaging-dev} |
- logol | 1 | {bio} |
mauve-aligner | 1 | {bio} |
mhap | 1 | {bio,bio-ngs} |
orthanc-gdcm | 1 | {imaging} |
@@ -140,6 +133,7 @@ Last-Update: Thu, 29 Apr 2021 01:42:04 +0000
runcircos-gui | 1 | {bio} |
sambamba | 1 | {bio} |
samblaster | 1 | {bio,covid-19} |
+ samtools-legacy | 1 | {bio-dev} |
segemehl | 1 | {bio} |
sga | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
@@ -148,7 +142,8 @@ Last-Update: Thu, 29 Apr 2021 01:42:04 +0000
varna | 1 | {bio} |
vienna-rna | 1 | {bio,covid-19} |
vtk-dicom | 1 | {imaging-dev} |
- yaha | 1 | {bio} |
+ zalign | 1 | {bio,cloud} |
+ assemblytics | 0 | {bio} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
@@ -161,6 +156,7 @@ Last-Update: Thu, 29 Apr 2021 01:42:04 +0000
delly | 0 | {covid-19,bio} |
dextractor | 0 | {bio,covid-19} |
emmax | 0 | {bio} |
+ estscan | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
hinge | 0 | {bio} |
@@ -192,7 +188,9 @@ Last-Update: Thu, 29 Apr 2021 01:42:04 +0000
libqes | 0 | {bio-dev} |
libseqlib | 0 | {bio-dev} |
libstatgen | 0 | {bio-dev} |
+ libvistaio | 0 | {imaging-dev} |
libxdf | 0 | {imaging-dev} |
+ logol | 0 | {bio} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
@@ -236,9 +234,10 @@ Last-Update: Thu, 29 Apr 2021 01:42:04 +0000
trace2dbest | 0 | {bio} |
varscan | 0 | {covid-19,bio} |
xdffileio | 0 | {imaging-dev} |
+ yaha | 0 | {bio} |
yanagiba | 0 | {bio,covid-19} |
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
sight | -1 | {imaging-dev} |
-(270 rows)
+(269 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/551e7f9c679ddd613999c2cb1f9e9335907943e7
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/551e7f9c679ddd613999c2cb1f9e9335907943e7
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