[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille gitlab at salsa.debian.org
Fri Apr 30 14:42:24 BST 2021



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
06dcff5b by Andreas Tille at 2021-04-30T13:42:19+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,79 +1,81 @@
-Last-Update: Fri, 30 Apr 2021 01:42:04 +0000
+Last-Update: Fri, 30 Apr 2021 13:42:03 +0000
 
  Source                        | Vote   |     Tasks                                           |                                 Tags                                 
 -------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk                         |    174 | {covid-19,imaging}                                  | 
+ dcmtk                         |    179 | {covid-19,imaging}                                  | 
  orthanc                       |     90 | {covid-19,practice,imaging}                         | 
  orthanc-wsi                   |     48 | {laboratory,imaging,his,oncology,covid-19,practice} | 
- gdcm                          |     47 | {imaging-dev}                                       | 
+ gdcm                          |     46 | {imaging-dev}                                       | 
  openslide                     |     42 | {imaging}                                           | 
- nipype                        |     37 | {imaging,imaging-dev}                               | 
- amide                         |     34 | {imaging}                                           | 
- dicom3tools                   |     31 | {imaging}                                           | 
+ nipype                        |     38 | {imaging,imaging-dev}                               | 
+ amide                         |     33 | {imaging}                                           | 
+ dicom3tools                   |     30 | {imaging}                                           | 
  dicomscope                    |     27 | {imaging}                                           | 
- htsjdk                        |     26 | {bio-dev}                                           | 
+ htsjdk                        |     27 | {bio-dev}                                           | 
  dcm2niix                      |     20 | {imaging}                                           | 
+ odin                          |     18 | {imaging-dev,imaging}                               | 
  gdcm                          |     17 | {covid-19,imaging}                                  | 
- odin                          |     17 | {imaging-dev,imaging}                               | 
- gdcm                          |     15 | {imaging-dev}                                       | 
- minc-tools                    |     14 | {imaging}                                           | 
+ gdcm                          |     16 | {imaging-dev}                                       | 
+ ngs-sdk                       |     14 | {bio-dev}                                           | 
+ dicomnifti                    |     13 | {imaging}                                           | 
  gnumed-server                 |     13 | {practice,covid-19}                                 | 
+ invesalius                    |     13 | {imaging}                                           | 
+ minc-tools                    |     13 | {imaging}                                           | 
  pixelmed                      |     13 | {imaging}                                           | 
- dicomnifti                    |     12 | {imaging}                                           | 
- invesalius                    |     12 | {imaging}                                           | 
- ngs-sdk                       |     12 | {bio-dev}                                           | 
- vtk-dicom                     |     12 | {imaging}                                           | 
- insighttoolkit4               |     11 | {imaging-dev}                                       | 
+ insighttoolkit4               |     12 | {imaging-dev}                                       | 
  nifticlib                     |     11 | {imaging}                                           | 
  orthanc-webviewer             |     11 | {imaging}                                           | 
- mia                           |     10 | {imaging}                                           | 
- nifti2dicom                   |      9 | {imaging}                                           | 
- plastimatch                   |      9 | {imaging}                                           | 
+ vtk-dicom                     |     11 | {imaging}                                           | 
+ plastimatch                   |     10 | {imaging}                                           | 
  adun.app                      |      8 | {bio}                                               | 
- nifti2dicom                   |      8 | {imaging}                                           | 
- dicompyler                    |      7 | {oncology}                                          | 
+ mia                           |      8 | {imaging}                                           | 
+ ngs-sdk                       |      8 | {bio-dev}                                           | 
+ bamkit                        |      7 | {covid-19,bio}                                      | 
  ngs-sdk                       |      7 | {bio-dev}                                           | 
+ nifti2dicom                   |      7 | {imaging}                                           | 
  treeview                      |      7 | {bio,bio-phylogeny}                                 | 
- bamkit                        |      6 | {covid-19,bio}                                      | 
  blasr                         |      6 | {bio-ngs,bio}                                       | 
+ dicompyler                    |      6 | {oncology}                                          | 
+ embassy-domainatrix           |      6 | {bio,cloud}                                         | 
  libminc                       |      6 | {imaging-dev}                                       | 
  librg-utils-perl              |      6 | {bio}                                               | 
  salmid                        |      6 | {bio}                                               | 
+ bart-view                     |      5 | {imaging}                                           | 
  ea-utils                      |      5 | {bio}                                               | 
- embassy-domainatrix           |      5 | {bio,cloud}                                         | 
+ jebl2                         |      5 | {bio-dev}                                           | 
  melting                       |      5 | {cloud,bio}                                         | 
+ openslide                     |      5 | {imaging-dev}                                       | 
  orthanc-dicomweb              |      5 | {covid-19,imaging}                                  | 
  rambo-k                       |      5 | {bio}                                               | 
- bart-view                     |      4 | {imaging}                                           | 
  busco                         |      4 | {covid-19,bio}                                      | 
+ ecopcr                        |      4 | {bio}                                               | 
  embassy-domsearch             |      4 | {bio,cloud}                                         | 
- jebl2                         |      4 | {bio-dev}                                           | 
  king                          |      4 | {imaging,typesetting}                               | 
- openslide                     |      4 | {imaging-dev}                                       | 
+ obitools                      |      4 | {bio}                                               | 
+ perm                          |      4 | {bio,cloud}                                         | 
+ plasmidid                     |      4 | {covid-19,bio}                                      | 
  pymia                         |      4 | {imaging-dev}                                       | 
  salmon                        |      4 | {bio,covid-19}                                      | 
  stacks                        |      4 | {bio}                                               | 
+ beast-mcmc                    |      3 | {bio-phylogeny,bio}                                 | 
  biomaj3-cli                   |      3 | {cloud}                                             | 
- ecopcr                        |      3 | {bio}                                               | 
+ bitseq                        |      3 | {bio}                                               | 
  elastix                       |      3 | {imaging}                                           | 
  embassy-domalign              |      3 | {cloud,bio}                                         | 
  getdata                       |      3 | {bio}                                               | 
  jellyfish1                    |      3 | {bio}                                               | 
  lagan                         |      3 | {bio}                                               | 
  nifticlib                     |      3 | {imaging-dev}                                       | 
- obitools                      |      3 | {bio}                                               | 
  opencfu                       |      3 | {laboratory}                                        | 
- orthanc-mysql                 |      3 | {imaging}                                           | 
  orthanc-postgresql            |      3 | {imaging}                                           | 
- oscar                         |      3 | {data,practice,tools}                               | 
  pbdagcon                      |      3 | {bio}                                               | 
- perm                          |      3 | {bio,cloud}                                         | 
- plasmidid                     |      3 | {covid-19,bio}                                      | 
+ phast                         |      3 | {bio}                                               | 
  saint                         |      3 | {bio}                                               | 
  sibsim4                       |      3 | {cloud,bio}                                         | 
- beast-mcmc                    |      2 | {bio-phylogeny,bio}                                 | 
+ staden                        |      3 | {bio}                                               | 
+ anfo                          |      2 | {bio,cloud}                                         | 
  biojava-live                  |      2 | {bio-dev}                                           | 
- bitseq                        |      2 | {bio}                                               | 
+ bio-tradis                    |      2 | {bio,bio-dev}                                       | 
  blimps                        |      2 | {bio}                                               | 
  fsm-lite                      |      2 | {bio}                                               | 
  gatb-core                     |      2 | {bio}                                               | 
@@ -86,26 +88,24 @@ Last-Update: Fri, 30 Apr 2021 01:42:04 +0000
  libsbml                       |      2 | {bio-dev}                                           | 
  metaphlan2                    |      2 | {bio}                                               | 
  microbegps                    |      2 | {bio}                                               | 
+ orthanc-mysql                 |      2 | {imaging}                                           | 
+ oscar                         |      2 | {data,practice,tools}                               | 
  papyrus                       |      2 | {imaging-dev}                                       | 
  paraclu                       |      2 | {bio,cloud}                                         | 
- phast                         |      2 | {bio}                                               | 
  phyutility                    |      2 | {cloud,bio}                                         | 
  piler                         |      2 | {bio}                                               | 
+ prime-phylo                   |      2 | {cloud,bio}                                         | 
  qcumber                       |      2 | {bio}                                               | 
  rtax                          |      2 | {bio,cloud}                                         | 
  sift                          |      2 | {bio}                                               | 
- sight                         |      2 | {imaging}                                           | 
  spaced                        |      2 | {bio}                                               | 
  sprai                         |      2 | {bio}                                               | 
  spread-phy                    |      2 | {bio,bio-phylogeny}                                 | 
- staden                        |      2 | {bio}                                               | 
  suitename                     |      2 | {bio}                                               | 
  tracetuner                    |      2 | {bio}                                               | 
  acedb                         |      1 | {bio,cloud}                                         | 
- anfo                          |      1 | {bio,cloud}                                         | 
  arden                         |      1 | {cloud,bio}                                         | 
  bbmap                         |      1 | {covid-19,bio}                                      | 
- bio-tradis                    |      1 | {bio,bio-dev}                                       | 
  brig                          |      1 | {bio}                                               | 
  cat-bat                       |      1 | {covid-19,bio}                                      | 
  clonalorigin                  |      1 | {bio}                                               | 
@@ -113,6 +113,7 @@ Last-Update: Fri, 30 Apr 2021 01:42:04 +0000
  cufflinks                     |      1 | {cloud,bio}                                         | 
  eegdev                        |      1 | {imaging-dev}                                       | 
  emboss-explorer               |      1 | {bio}                                               | 
+ estscan                       |      1 | {bio}                                               | 
  fastml                        |      1 | {bio}                                               | 
  gifticlib                     |      1 | {imaging-dev}                                       | 
  ipig                          |      1 | {bio}                                               | 
@@ -124,18 +125,17 @@ Last-Update: Fri, 30 Apr 2021 01:42:04 +0000
  mhap                          |      1 | {bio,bio-ngs}                                       | 
  orthanc-gdcm                  |      1 | {imaging}                                           | 
  placnet                       |      1 | {bio}                                               | 
- prime-phylo                   |      1 | {cloud,bio}                                         | 
  proalign                      |      1 | {bio,bio-phylogeny}                                 | 
  python-wdlparse               |      1 | {bio-dev}                                           | 
  quorum                        |      1 | {bio}                                               | 
  rdp-alignment                 |      1 | {bio}                                               | 
  rdp-classifier                |      1 | {bio}                                               | 
  runcircos-gui                 |      1 | {bio}                                               | 
- sambamba                      |      1 | {bio}                                               | 
  samblaster                    |      1 | {bio,covid-19}                                      | 
  samtools-legacy               |      1 | {bio-dev}                                           | 
  segemehl                      |      1 | {bio}                                               | 
  sga                           |      1 | {bio}                                               | 
+ sight                         |      1 | {imaging}                                           | 
  simpleitk                     |      1 | {imaging-dev}                                       | 
  soapaligner                   |      1 | {bio}                                               | 
  tvc                           |      1 | {bio}                                               | 
@@ -156,7 +156,6 @@ Last-Update: Fri, 30 Apr 2021 01:42:04 +0000
  delly                         |      0 | {covid-19,bio}                                      | 
  dextractor                    |      0 | {bio,covid-19}                                      | 
  emmax                         |      0 | {bio}                                               | 
- estscan                       |      0 | {bio}                                               | 
  fis-gtm                       |      0 | {his}                                               | 
  gatb-core                     |      0 | {bio-dev}                                           | 
  hinge                         |      0 | {bio}                                               | 
@@ -216,6 +215,7 @@ Last-Update: Fri, 30 Apr 2021 01:42:04 +0000
  python-seqcluster             |      0 | {bio}                                               | 
  q2-sample-classifier          |      0 | {bio-dev,bio}                                       | 
  resfinder-db                  |      0 | {bio}                                               | 
+ sambamba                      |      0 | {bio}                                               | 
  sbmltoolbox                   |      0 | {bio-dev}                                           | 
  seq-gen                       |      0 | {bio}                                               | 
  shovill                       |      0 | {bio,covid-19}                                      | 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/06dcff5b6baabe7c661766afb0d4ca4e9fe4174a

-- 
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/06dcff5b6baabe7c661766afb0d4ca4e9fe4174a
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20210430/3ba35cfb/attachment-0001.htm>


More information about the debian-med-commit mailing list