Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
06dcff5b by Andreas Tille at 2021-04-30T13:42:19+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,79 +1,81 @@
-Last-Update: Fri, 30 Apr 2021 01:42:04 +0000
+Last-Update: Fri, 30 Apr 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 174 | {covid-19,imaging} |
+ dcmtk | 179 | {covid-19,imaging} |
orthanc | 90 | {covid-19,practice,imaging} |
orthanc-wsi | 48 | {laboratory,imaging,his,oncology,covid-19,practice} |
- gdcm | 47 | {imaging-dev} |
+ gdcm | 46 | {imaging-dev} |
openslide | 42 | {imaging} |
- nipype | 37 | {imaging,imaging-dev} |
- amide | 34 | {imaging} |
- dicom3tools | 31 | {imaging} |
+ nipype | 38 | {imaging,imaging-dev} |
+ amide | 33 | {imaging} |
+ dicom3tools | 30 | {imaging} |
dicomscope | 27 | {imaging} |
- htsjdk | 26 | {bio-dev} |
+ htsjdk | 27 | {bio-dev} |
dcm2niix | 20 | {imaging} |
+ odin | 18 | {imaging-dev,imaging} |
gdcm | 17 | {covid-19,imaging} |
- odin | 17 | {imaging-dev,imaging} |
- gdcm | 15 | {imaging-dev} |
- minc-tools | 14 | {imaging} |
+ gdcm | 16 | {imaging-dev} |
+ ngs-sdk | 14 | {bio-dev} |
+ dicomnifti | 13 | {imaging} |
gnumed-server | 13 | {practice,covid-19} |
+ invesalius | 13 | {imaging} |
+ minc-tools | 13 | {imaging} |
pixelmed | 13 | {imaging} |
- dicomnifti | 12 | {imaging} |
- invesalius | 12 | {imaging} |
- ngs-sdk | 12 | {bio-dev} |
- vtk-dicom | 12 | {imaging} |
- insighttoolkit4 | 11 | {imaging-dev} |
+ insighttoolkit4 | 12 | {imaging-dev} |
nifticlib | 11 | {imaging} |
orthanc-webviewer | 11 | {imaging} |
- mia | 10 | {imaging} |
- nifti2dicom | 9 | {imaging} |
- plastimatch | 9 | {imaging} |
+ vtk-dicom | 11 | {imaging} |
+ plastimatch | 10 | {imaging} |
adun.app | 8 | {bio} |
- nifti2dicom | 8 | {imaging} |
- dicompyler | 7 | {oncology} |
+ mia | 8 | {imaging} |
+ ngs-sdk | 8 | {bio-dev} |
+ bamkit | 7 | {covid-19,bio} |
ngs-sdk | 7 | {bio-dev} |
+ nifti2dicom | 7 | {imaging} |
treeview | 7 | {bio,bio-phylogeny} |
- bamkit | 6 | {covid-19,bio} |
blasr | 6 | {bio-ngs,bio} |
+ dicompyler | 6 | {oncology} |
+ embassy-domainatrix | 6 | {bio,cloud} |
libminc | 6 | {imaging-dev} |
librg-utils-perl | 6 | {bio} |
salmid | 6 | {bio} |
+ bart-view | 5 | {imaging} |
ea-utils | 5 | {bio} |
- embassy-domainatrix | 5 | {bio,cloud} |
+ jebl2 | 5 | {bio-dev} |
melting | 5 | {cloud,bio} |
+ openslide | 5 | {imaging-dev} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
rambo-k | 5 | {bio} |
- bart-view | 4 | {imaging} |
busco | 4 | {covid-19,bio} |
+ ecopcr | 4 | {bio} |
embassy-domsearch | 4 | {bio,cloud} |
- jebl2 | 4 | {bio-dev} |
king | 4 | {imaging,typesetting} |
- openslide | 4 | {imaging-dev} |
+ obitools | 4 | {bio} |
+ perm | 4 | {bio,cloud} |
+ plasmidid | 4 | {covid-19,bio} |
pymia | 4 | {imaging-dev} |
salmon | 4 | {bio,covid-19} |
stacks | 4 | {bio} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
biomaj3-cli | 3 | {cloud} |
- ecopcr | 3 | {bio} |
+ bitseq | 3 | {bio} |
elastix | 3 | {imaging} |
embassy-domalign | 3 | {cloud,bio} |
getdata | 3 | {bio} |
jellyfish1 | 3 | {bio} |
lagan | 3 | {bio} |
nifticlib | 3 | {imaging-dev} |
- obitools | 3 | {bio} |
opencfu | 3 | {laboratory} |
- orthanc-mysql | 3 | {imaging} |
orthanc-postgresql | 3 | {imaging} |
- oscar | 3 | {data,practice,tools} |
pbdagcon | 3 | {bio} |
- perm | 3 | {bio,cloud} |
- plasmidid | 3 | {covid-19,bio} |
+ phast | 3 | {bio} |
saint | 3 | {bio} |
sibsim4 | 3 | {cloud,bio} |
- beast-mcmc | 2 | {bio-phylogeny,bio} |
+ staden | 3 | {bio} |
+ anfo | 2 | {bio,cloud} |
biojava-live | 2 | {bio-dev} |
- bitseq | 2 | {bio} |
+ bio-tradis | 2 | {bio,bio-dev} |
blimps | 2 | {bio} |
fsm-lite | 2 | {bio} |
gatb-core | 2 | {bio} |
@@ -86,26 +88,24 @@ Last-Update: Fri, 30 Apr 2021 01:42:04 +0000
libsbml | 2 | {bio-dev} |
metaphlan2 | 2 | {bio} |
microbegps | 2 | {bio} |
+ orthanc-mysql | 2 | {imaging} |
+ oscar | 2 | {data,practice,tools} |
papyrus | 2 | {imaging-dev} |
paraclu | 2 | {bio,cloud} |
- phast | 2 | {bio} |
phyutility | 2 | {cloud,bio} |
piler | 2 | {bio} |
+ prime-phylo | 2 | {cloud,bio} |
qcumber | 2 | {bio} |
rtax | 2 | {bio,cloud} |
sift | 2 | {bio} |
- sight | 2 | {imaging} |
spaced | 2 | {bio} |
sprai | 2 | {bio} |
spread-phy | 2 | {bio,bio-phylogeny} |
- staden | 2 | {bio} |
suitename | 2 | {bio} |
tracetuner | 2 | {bio} |
acedb | 1 | {bio,cloud} |
- anfo | 1 | {bio,cloud} |
arden | 1 | {cloud,bio} |
bbmap | 1 | {covid-19,bio} |
- bio-tradis | 1 | {bio,bio-dev} |
brig | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
clonalorigin | 1 | {bio} |
@@ -113,6 +113,7 @@ Last-Update: Fri, 30 Apr 2021 01:42:04 +0000
cufflinks | 1 | {cloud,bio} |
eegdev | 1 | {imaging-dev} |
emboss-explorer | 1 | {bio} |
+ estscan | 1 | {bio} |
fastml | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
ipig | 1 | {bio} |
@@ -124,18 +125,17 @@ Last-Update: Fri, 30 Apr 2021 01:42:04 +0000
mhap | 1 | {bio,bio-ngs} |
orthanc-gdcm | 1 | {imaging} |
placnet | 1 | {bio} |
- prime-phylo | 1 | {cloud,bio} |
proalign | 1 | {bio,bio-phylogeny} |
python-wdlparse | 1 | {bio-dev} |
quorum | 1 | {bio} |
rdp-alignment | 1 | {bio} |
rdp-classifier | 1 | {bio} |
runcircos-gui | 1 | {bio} |
- sambamba | 1 | {bio} |
samblaster | 1 | {bio,covid-19} |
samtools-legacy | 1 | {bio-dev} |
segemehl | 1 | {bio} |
sga | 1 | {bio} |
+ sight | 1 | {imaging} |
simpleitk | 1 | {imaging-dev} |
soapaligner | 1 | {bio} |
tvc | 1 | {bio} |
@@ -156,7 +156,6 @@ Last-Update: Fri, 30 Apr 2021 01:42:04 +0000
delly | 0 | {covid-19,bio} |
dextractor | 0 | {bio,covid-19} |
emmax | 0 | {bio} |
- estscan | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
hinge | 0 | {bio} |
@@ -216,6 +215,7 @@ Last-Update: Fri, 30 Apr 2021 01:42:04 +0000
python-seqcluster | 0 | {bio} |
q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
+ sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
shovill | 0 | {bio,covid-19} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/06dcff5b6baabe7c661766afb0d4ca4e9fe4174a
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/06dcff5b6baabe7c661766afb0d4ca4e9fe4174a
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