[med-svn] [Git][med-team/perm][master] 4 commits: Add DEP3

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / perm


Commits:
b58c0975 by Nilesh Patra at 2021-08-03T00:31:05+05:30
Add DEP3

- - - - -
d6e9cdfd by Nilesh Patra at 2021-08-03T00:41:56+05:30
d/copyright: Minor Fix

- - - - -
075178ff by Nilesh Patra at 2021-08-03T00:44:59+05:30
d/tests/run-unit-test: Minor fix

- - - - -
0f28975f by Nilesh Patra at 2021-08-03T00:44:59+05:30
Upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/copyright
- debian/patches/fix-buffer-overflow.patch
- debian/tests/run-unit-test


Changes:

=====================================
debian/changelog
=====================================
@@ -1,11 +1,23 @@
-perm (0.4.0-6) UNRELEASED; urgency=medium
+perm (0.4.0-6) unstable; urgency=medium
 
   * Team Upload.
-  * Add testdata
-  * Add autopkgtest
-  * Install docs
-
- -- Shruti Sridhar <shruti.sridhar99 at gmail.com>  Sun, 01 Aug 2021 19:32:02 +0530
+  [ Shruti Sridhar ]
+  * d/tests/data: Add testdata
+  * d/tests: Add autopkgtest
+  * d/example: Install test data as example
+  * d/docs: Install d/README.* and d/tests/run-unit-test
+    as documents
+  * d/p/hardening.patch: Add CPPFLAGS which helped detect
+    buffer overflow
+  * d/copyright: Test data has been written by Shruti, mentioning
+    them in copyright for the same
+
+  [ Nilesh Patra ]
+  * d/p/fix-buffer-overflow.patch: Use strlcpy from libbsd-dev
+    instead of strncpy in order to fix buffer overflow
+  * d/control: Add B-D on libbsd-dev
+
+ -- Nilesh Patra <nilesh at debian.org>  Tue, 03 Aug 2021 00:31:10 +0530
 
 perm (0.4.0-5) unstable; urgency=medium
 


=====================================
debian/copyright
=====================================
@@ -12,7 +12,7 @@ Copyright: (c) 2012-2014 Hyun Soon Gweon <hyugwe at ceh.ac.uk>
                2014-2017 Andreas Tille <tille at debian.org>
 License: Apache-2.0
 
-Files: debian/tests/data
+Files: debian/tests/data/*
 Copyright: Shruti Sridhar <shruti.sridhar99 at gmail.com>
 License: Apache-2.0
 


=====================================
debian/patches/fix-buffer-overflow.patch
=====================================
@@ -1,3 +1,6 @@
+Description: Use strlcpy from libbsd-dev instead of strncpy in order to avoid buffer overflow
+Author: Nilesh Patra <nilesh at debian.org>
+Last-Update: 2021-08-03
 --- a/makefile
 +++ b/makefile
 @@ -2,7 +2,7 @@


=====================================
debian/tests/run-unit-test
=====================================
@@ -14,4 +14,5 @@ cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
 cd "${AUTOPKGTEST_TMP}"
 
 perm Ref.fasta Reads.fasta -v 100 -A -o out.sam  
-[ -s "out.sam" ] || exit 1 && echo "PASS test"
\ No newline at end of file
+[ -s "out.sam" ] || exit 1
+echo "PASS test"



View it on GitLab: https://salsa.debian.org/med-team/perm/-/compare/8034f60434e71f71eaa180faf417cc63a2871e87...0f28975f9628428774265176a1d1ac3fb1745231

-- 
View it on GitLab: https://salsa.debian.org/med-team/perm/-/compare/8034f60434e71f71eaa180faf417cc63a2871e87...0f28975f9628428774265176a1d1ac3fb1745231
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