[med-svn] [Git][med-team/bamkit][master] 4 commits: Add python3-pysam to Depends

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / bamkit


Commits:
228a31b6 by Nilesh Patra at 2021-08-05T00:55:14+05:30
Add python3-pysam to Depends

- - - - -
159db09d by Nilesh Patra at 2021-08-05T00:55:42+05:30
Declare compliance with policy 4.5.1

- - - - -
2142c6e0 by Nilesh Patra at 2021-08-05T00:56:18+05:30
Minor fix

- - - - -
a4c1b3ec by Nilesh Patra at 2021-08-05T00:57:17+05:30
Interim changelog entry

- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/tests/control
- debian/tests/run-unit-test


Changes:

=====================================
debian/changelog
=====================================
@@ -1,10 +1,15 @@
 bamkit (0.0.1+git20170413.ccd079d-3) UNRELEASED; urgency=medium
 
   * Team Upload.
+  [ Shruti Sridhar ]
   * Add autopkgtests
   * Install docs
 
- -- Shruti Sridhar <shruti.sridhar99 at gmail.com>  Wed, 04 Aug 2021 23:39:29 +0530
+  [ Nilesh Patra ]
+  * Add python3-pysam to Depends
+  * Declare compliance with policy 4.5.1
+
+ -- Nilesh Patra <nilesh at debian.org>  Thu, 05 Aug 2021 00:56:34 +0530
 
 bamkit (0.0.1+git20170413.ccd079d-2) unstable; urgency=medium
 


=====================================
debian/control
=====================================
@@ -6,7 +6,7 @@ Uploaders: Andreas Tille <tille at debian.org>
 Build-Depends: debhelper-compat (= 13),
                dh-python,
                python3
-Standards-Version: 4.5.0
+Standards-Version: 4.5.1
 Vcs-Browser: https://salsa.debian.org/med-team/bamkit
 Vcs-Git: https://salsa.debian.org/med-team/bamkit.git
 Homepage: https://github.com/hall-lab/bamkit
@@ -15,7 +15,8 @@ Rules-Requires-Root: no
 Package: bamkit
 Architecture: all
 Depends: ${python3:Depends},
-         ${misc:Depends}
+         ${misc:Depends},
+         python3-pysam
 Description: tools for common BAM file manipulations
  This package provides some Python3 tools for common BAM file
  manipulations.


=====================================
debian/tests/control
=====================================
@@ -1,3 +1,3 @@
 Tests: run-unit-test
-Depends: @, python3-pysam, samtools
+Depends: @, samtools
 Restrictions: allow-stderr


=====================================
debian/tests/run-unit-test
=====================================
@@ -23,5 +23,5 @@ samtools addreplacerg -r ID:S1 -r LB:L1 -r SM:SAMPLE1 -o output reads.bam
 bamlibs.py reads.bam 
 bamcleanheader.py reads.bam > output
 bamfilterrg.py -i reads.bam > filter
-[ -s "output" ] && [ -s "filter" ] || exit 1 && echo "PASS Tests"
-
+[ -s "output" ] && [ -s "filter" ] || exit 1
+echo "PASS Tests"



View it on GitLab: https://salsa.debian.org/med-team/bamkit/-/compare/e4786063b10c090a5cffb0b0ed438b8a526a51d1...a4c1b3ec1cf80f27f6109762d2084a9b3d8cfe95

-- 
View it on GitLab: https://salsa.debian.org/med-team/bamkit/-/compare/e4786063b10c090a5cffb0b0ed438b8a526a51d1...a4c1b3ec1cf80f27f6109762d2084a9b3d8cfe95
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