Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
7e0c5a3c by Andreas Tille at 2021-08-09T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,126 +1,144 @@
-Last-Update: Mon, 09 Aug 2021 01:42:03 +0000
+Last-Update: Mon, 09 Aug 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 171 | {covid-19,imaging} |
- orthanc | 102 | {imaging,covid-19,practice} |
- orthanc-wsi | 50 | {imaging,practice,his,covid-19,oncology,laboratory} |
+ dcmtk | 169 | {covid-19,imaging} |
+ orthanc | 100 | {imaging,covid-19,practice} |
+ orthanc-wsi | 49 | {imaging,practice,his,covid-19,oncology,laboratory} |
gdcm | 32 | {imaging-dev} |
dicom3tools | 27 | {imaging} |
amide | 26 | {imaging} |
- dicomscope | 25 | {imaging} |
+ gdcm | 25 | {covid-19,imaging} |
htsjdk | 25 | {bio-dev} |
- gdcm | 23 | {covid-19,imaging} |
- dcm2niix | 21 | {imaging} |
- odin | 21 | {imaging-dev,imaging} |
- orthanc-webviewer | 18 | {imaging} |
- insighttoolkit4 | 15 | {imaging-dev} |
- minc-tools | 15 | {imaging} |
- nifticlib | 14 | {imaging} |
+ dicomscope | 24 | {imaging} |
+ dcm2niix | 23 | {imaging} |
+ odin | 23 | {imaging-dev,imaging} |
+ insighttoolkit4 | 16 | {imaging-dev} |
+ minc-tools | 16 | {imaging} |
+ orthanc-webviewer | 16 | {imaging} |
+ nifticlib | 15 | {imaging} |
gnumed-server | 13 | {covid-19,practice} |
- gdcm | 12 | {imaging-dev} |
+ dicomnifti | 12 | {imaging} |
invesalius | 12 | {imaging} |
- dicomnifti | 11 | {imaging} |
- pixelmed | 11 | {imaging} |
+ pixelmed | 12 | {imaging} |
+ mia | 11 | {imaging} |
+ openslide | 11 | {imaging} |
adun.app | 10 | {bio} |
- mia | 10 | {imaging} |
- openslide | 10 | {imaging} |
- libminc | 8 | {imaging-dev} |
+ gdcm | 9 | {imaging-dev} |
+ libminc | 9 | {imaging-dev} |
+ nifti2dicom | 9 | {imaging} |
+ plastimatch | 9 | {imaging} |
+ salmid | 9 | {bio} |
ngs-sdk | 8 | {bio-dev} |
- nifti2dicom | 8 | {imaging} |
+ nifticlib | 8 | {imaging-dev} |
orthanc-dicomweb | 8 | {covid-19,imaging} |
- plastimatch | 8 | {imaging} |
- salmid | 8 | {bio} |
- nifticlib | 7 | {imaging-dev} |
- orthanc-postgresql | 7 | {imaging} |
- busco | 6 | {bio,covid-19} |
- ea-utils | 6 | {bio} |
+ busco | 7 | {bio,covid-19} |
+ ea-utils | 7 | {bio} |
+ king | 7 | {imaging,typesetting} |
jebl2 | 6 | {bio-dev} |
- king | 6 | {imaging,typesetting} |
- oscar | 6 | {tools,data,practice} |
+ nifti2dicom | 6 | {imaging} |
+ orthanc-postgresql | 6 | {imaging} |
dicompyler | 5 | {oncology} |
elastix | 5 | {imaging} |
melting | 5 | {cloud,bio} |
- nifti2dicom | 5 | {imaging} |
orthanc-mysql | 5 | {imaging} |
+ oscar | 5 | {tools,data,practice} |
+ pymia | 5 | {imaging-dev} |
+ salmon | 5 | {bio,covid-19} |
bart-view | 4 | {imaging} |
beast-mcmc | 4 | {bio-phylogeny,bio} |
biojava-live | 4 | {bio-dev} |
embassy-domainatrix | 4 | {cloud,bio} |
+ jellyfish1 | 4 | {bio} |
+ lagan | 4 | {bio} |
libsbml | 4 | {bio-dev} |
+ obitools | 4 | {bio} |
phyutility | 4 | {bio,cloud} |
- pymia | 4 | {imaging-dev} |
+ rdp-alignment | 4 | {bio} |
saint | 4 | {bio} |
- salmon | 4 | {bio,covid-19} |
+ sibsim4 | 4 | {cloud,bio} |
+ spread-phy | 4 | {bio,bio-phylogeny} |
+ stacks | 4 | {bio} |
+ staden | 4 | {bio} |
+ tracetuner | 4 | {bio} |
treeview | 4 | {bio-phylogeny,bio} |
anfo | 3 | {bio,cloud} |
+ bio-tradis | 3 | {bio-dev,bio} |
+ bitseq | 3 | {bio} |
+ brig | 3 | {bio} |
+ canu | 3 | {bio} |
embassy-domalign | 3 | {cloud,bio} |
embassy-domsearch | 3 | {bio,cloud} |
+ estscan | 3 | {bio} |
+ gatb-core | 3 | {bio} |
getdata | 3 | {bio} |
ipig | 3 | {bio} |
- jellyfish1 | 3 | {bio} |
- lagan | 3 | {bio} |
+ lamarc | 3 | {bio} |
libpal-java | 3 | {bio-dev} |
+ librdp-taxonomy-tree-java | 3 | {bio-dev} |
librg-utils-perl | 3 | {bio} |
mauve-aligner | 3 | {bio} |
ngs-sdk | 3 | {bio-dev} |
- obitools | 3 | {bio} |
+ nipype | 3 | {imaging-dev,imaging} |
paraclu | 3 | {cloud,bio} |
piler | 3 | {bio} |
proalign | 3 | {bio,bio-phylogeny} |
- rdp-alignment | 3 | {bio} |
- sibsim4 | 3 | {cloud,bio} |
+ rdp-classifier | 3 | {bio} |
+ runcircos-gui | 3 | {bio} |
sight | 3 | {imaging} |
- spread-phy | 3 | {bio,bio-phylogeny} |
- stacks | 3 | {bio} |
- staden | 3 | {bio} |
- tracetuner | 3 | {bio} |
zalign | 3 | {cloud,bio} |
- bio-tradis | 2 | {bio-dev,bio} |
- bitseq | 2 | {bio} |
+ arden | 2 | {cloud,bio} |
+ assemblytics | 2 | {bio} |
+ bamkit | 2 | {bio,covid-19} |
+ biomaj3-cli | 2 | {cloud} |
blasr | 2 | {bio,bio-ngs} |
blimps | 2 | {bio} |
- brig | 2 | {bio} |
- canu | 2 | {bio} |
+ cat-bat | 2 | {bio,covid-19} |
+ clonalframeml | 2 | {covid-19,bio} |
+ clonalorigin | 2 | {bio} |
+ delly | 2 | {bio,covid-19} |
+ dextractor | 2 | {bio,covid-19} |
ecopcr | 2 | {bio} |
- emboss-explorer | 2 | {bio} |
- estscan | 2 | {bio} |
+ fastml | 2 | {bio} |
fsm-lite | 2 | {bio} |
- gatb-core | 2 | {bio} |
+ ghmm | 2 | {bio} |
+ hinge | 2 | {bio} |
jmodeltest | 2 | {bio-phylogeny,bio} |
- lamarc | 2 | {bio} |
libdivsufsort | 2 | {bio-dev} |
libmuscle | 2 | {bio-dev} |
libncl | 2 | {bio} |
- librdp-taxonomy-tree-java | 2 | {bio-dev} |
- metaphlan2 | 2 | {bio} |
- microbegps | 2 | {bio} |
- nipype | 2 | {imaging-dev,imaging} |
+ logol | 2 | {bio} |
+ mhap | 2 | {bio,bio-ngs} |
openslide | 2 | {imaging-dev} |
orthanc-gdcm | 2 | {imaging} |
papyrus | 2 | {imaging-dev} |
pbdagcon | 2 | {bio} |
+ plasmidseeker | 2 | {bio} |
prime-phylo | 2 | {cloud,bio} |
- rdp-classifier | 2 | {bio} |
+ pscan-chip | 2 | {bio} |
+ qcumber | 2 | {bio} |
+ quorum | 2 | {bio} |
+ rambo-k | 2 | {bio} |
rtax | 2 | {cloud,bio} |
- runcircos-gui | 2 | {bio} |
+ samblaster | 2 | {covid-19,bio} |
+ segemehl | 2 | {bio} |
sga | 2 | {bio} |
sift | 2 | {bio} |
+ soapaligner | 2 | {bio} |
+ soapsnp | 2 | {bio} |
spaced | 2 | {bio} |
- sprai | 2 | {bio} |
- arden | 1 | {cloud,bio} |
- assemblytics | 1 | {bio} |
- bamkit | 1 | {bio,covid-19} |
- biomaj3-cli | 1 | {cloud} |
- cat-bat | 1 | {bio,covid-19} |
- clonalframeml | 1 | {covid-19,bio} |
- clonalorigin | 1 | {bio} |
+ suitename | 2 | {bio} |
+ surankco | 2 | {bio} |
+ trace2dbest | 2 | {bio} |
+ tvc | 2 | {bio} |
+ yaha | 2 | {bio} |
+ atropos | 1 | {bio} |
+ bbmap | 1 | {bio,covid-19} |
+ bustools | 1 | {bio,covid-19} |
ctn | 1 | {imaging-dev} |
- delly | 1 | {bio,covid-19} |
- dextractor | 1 | {bio,covid-19} |
- fastml | 1 | {bio} |
- ghmm | 1 | {bio} |
- hinge | 1 | {bio} |
+ emboss-explorer | 1 | {bio} |
+ emmax | 1 | {bio} |
+ kmerresistance | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libbpp-core | 1 | {bio-dev} |
libbpp-phyl | 1 | {bio-dev} |
@@ -133,46 +151,41 @@ Last-Update: Mon, 09 Aug 2021 01:42:03 +0000
libmems | 1 | {bio-dev} |
libstatgen | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- logol | 1 | {bio} |
- mhap | 1 | {bio,bio-ngs} |
+ metaphlan2 | 1 | {bio} |
+ microbegps | 1 | {bio} |
ncbi-vdb | 1 | {bio-dev} |
opencfu | 1 | {laboratory} |
orthanc-python | 1 | {covid-19} |
pbseqlib | 1 | {bio-dev} |
phast | 1 | {bio} |
+ pilercr | 1 | {bio} |
+ pique | 1 | {bio} |
placnet | 1 | {bio} |
- plasmidseeker | 1 | {bio} |
- pscan-chip | 1 | {bio} |
- qcumber | 1 | {bio} |
- quorum | 1 | {bio} |
- rambo-k | 1 | {bio} |
- samblaster | 1 | {covid-19,bio} |
- segemehl | 1 | {bio} |
- soapaligner | 1 | {bio} |
- soapsnp | 1 | {bio} |
- suitename | 1 | {bio} |
- surankco | 1 | {bio} |
- trace2dbest | 1 | {bio} |
- tvc | 1 | {bio} |
- yaha | 1 | {bio} |
+ pplacer | 1 | {bio-phylogeny,covid-19,bio} |
+ python-bcbio-gff | 1 | {bio-dev} |
+ sambamba | 1 | {bio} |
+ shovill | 1 | {bio,covid-19} |
+ skesa | 1 | {bio} |
+ skewer | 1 | {bio} |
+ sprai | 1 | {bio} |
+ svim | 1 | {bio} |
+ thesias | 1 | {bio,covid-19} |
+ tophat-recondition | 1 | {bio,covid-19} |
+ varna | 1 | {bio} |
+ yanagiba | 1 | {bio,covid-19} |
acedb | 0 | {bio,cloud} |
- atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
- bbmap | 0 | {bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
- bustools | 0 | {bio,covid-19} |
camp | 0 | {imaging-dev} |
cufflinks | 0 | {cloud,bio} |
eegdev | 0 | {imaging-dev} |
- emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
gifticlib | 0 | {imaging-dev} |
htscodecs | 0 | {covid-19,bio-dev} |
intake | 0 | {bio-dev,bio} |
- kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
@@ -203,34 +216,21 @@ Last-Update: Mon, 09 Aug 2021 01:42:03 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
pigx-rnaseq | 0 | {covid-19,bio} |
- pilercr | 0 | {bio} |
- pique | 0 | {bio} |
plasmidid | 0 | {covid-19,bio} |
- pplacer | 0 | {bio-phylogeny,covid-19,bio} |
- python-bcbio-gff | 0 | {bio-dev} |
python-seqcluster | 0 | {bio-dev,covid-19} |
python-wdlparse | 0 | {bio-dev} |
resfinder-db | 0 | {bio} |
- sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
- shovill | 0 | {bio,covid-19} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
- skesa | 0 | {bio} |
- skewer | 0 | {bio} |
smrtanalysis | 0 | {bio,covid-19} |
spaln | 0 | {covid-19,bio} |
srf | 0 | {bio-dev} |
- svim | 0 | {bio} |
- thesias | 0 | {bio,covid-19} |
- tophat-recondition | 0 | {bio,covid-19} |
- varna | 0 | {bio} |
varscan | 0 | {covid-19,bio} |
vienna-rna | 0 | {covid-19,bio} |
xdffileio | 0 | {imaging-dev} |
- yanagiba | 0 | {bio,covid-19} |
mssstest | -1 | {tools} |
python-seqcluster | -1 | {bio} |
(264 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7e0c5a3c75855d407c154e2584fc2d4597d43107
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7e0c5a3c75855d407c154e2584fc2d4597d43107
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