[med-svn] [Git][med-team/libgoby-java][master] Forwarding patches

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / libgoby-java


Commits:
02da5659 by Pierre Gruet at 2021-08-10T14:09:34+02:00
Forwarding patches

- - - - -


6 changed files:

- debian/patches/adding_dependencies.patch
- debian/patches/catch_IOException_LineIterator.patch
- debian/patches/goby_script.patch
- debian/patches/inclusions_in_SplitTranscriptsMode.patch
- debian/patches/protoc.patch
- debian/patches/using_correct_SamReader_api.patch


Changes:

=====================================
debian/patches/adding_dependencies.patch
=====================================
@@ -1,5 +1,6 @@
-Description: Adding missing dependencies to goby-io/pom.xml
+Description: Adding missing dependencies to the various pom.xml files
 Author: Pierre Gruet <pgt at debian.org>
+Forwarded: https://github.com/CampagneLaboratory/goby3/issues/6
 Last-Update: 2020-10-31
 
 --- a/goby-io/pom.xml


=====================================
debian/patches/catch_IOException_LineIterator.patch
=====================================
@@ -1,6 +1,6 @@
 Description: Catch the IOException launched by close() method of LineIterator
 Author: Pierre Gruet <pgt at debian.org>
-Forwarded: no
+Forwarded: https://github.com/CampagneLaboratory/goby3/issues/7
 Last-Update: 2020-11-03
 
 --- a/goby-distribution/src/main/java/org/campagnelab/goby/modes/EmpiricalPMode.java


=====================================
debian/patches/goby_script.patch
=====================================
@@ -1,6 +1,6 @@
 Description: modifying the launcher script to account for Debian paths
 Author: Pierre Gruet <pgt at debian.org>
-Forwarded: no
+Forwarded: not-needed
 Last-Update: 2021-08-08
 
 --- a/goby


=====================================
debian/patches/inclusions_in_SplitTranscriptsMode.patch
=====================================
@@ -1,7 +1,7 @@
 Description: reading class GeneTranscriptRelationships from Goby archive
  The above-named class is in the archive of Goby and thus does not need to be read elsewhere.
 Author: Pierre Gruet <pgt at debian.org>
-Forwarded: no
+Forwarded: https://github.com/CampagneLaboratory/goby3/issues/8
 Last-Update: 2020-11-02
 
 --- a/goby-distribution/src/main/java/org/campagnelab/goby/modes/SplitTranscriptsMode.java


=====================================
debian/patches/protoc.patch
=====================================
@@ -1,5 +1,6 @@
 Description: Using Debian-packaged protoc compiler
 Author: Pierre Gruet <pgt at debian.org>
+Forwarded: not-needed
 Last-Update: 2020-08-24
 
 --- a/goby-io/pom.xml


=====================================
debian/patches/using_correct_SamReader_api.patch
=====================================
@@ -1,7 +1,7 @@
 Description: using the correct SamReader api
 Author: Pierre Gruet <pgt at debian.org>
 Origin: https://sources.debian.org/src/fastqc/0.11.9+dfsg-4/debian/patches/htsjdk-api.patch
-Forwarded: no
+Forwarded: not-needed
 Last-Update: 2020-11-06
 
 --- a/goby-distribution/src/main/java/org/campagnelab/goby/modes/SAMComparisonMode.java



View it on GitLab: https://salsa.debian.org/med-team/libgoby-java/-/commit/02da56598e67eaca2ff3ac81c285670fc76d12ad

-- 
View it on GitLab: https://salsa.debian.org/med-team/libgoby-java/-/commit/02da56598e67eaca2ff3ac81c285670fc76d12ad
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