[med-svn] [Git][med-team/cd-hit][master] 5 commits: d/watch: fix broken link to github

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / cd-hit


Commits:
92012d41 by Étienne Mollier at 2021-08-10T22:32:54+02:00
d/watch: fix broken link to github

- - - - -
27c9a0f1 by Étienne Mollier at 2021-08-10T22:33:54+02:00
d/control: add myself to uploaders

- - - - -
442a99cc by Étienne Mollier at 2021-08-10T22:34:20+02:00
update changelog

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c5dc37a4 by Étienne Mollier at 2021-08-10T22:58:07+02:00
d/t/run-unit-test: disable memory limits in tests

The memory consumption of cd-hit* is proportional to the cores count.
Current implementation of autopkgtest limit the total memory
consumption to 1000M.  On machines with very high cores count, this
amount is unsufficient.  Let's pass -M 0 to not enforce any limit.

Closes: #992052

- - - - -
dc817a50 by Étienne Mollier at 2021-08-10T22:59:58+02:00
update changelog

- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/tests/run-unit-test
- debian/watch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+cd-hit (4.8.1-4) UNRELEASED; urgency=medium
+
+  * d/watch: fix broken link to github
+  * d/control: add myself to uploaders
+  * d/t/run-unit-test: disable memory limits in tests (Closes: #992052)
+
+ -- Étienne Mollier <emollier at debian.org>  Tue, 10 Aug 2021 22:58:40 +0200
+
 cd-hit (4.8.1-3) unstable; urgency=medium
 
   * Fix Homepage


=====================================
debian/control
=====================================
@@ -1,7 +1,8 @@
 Source: cd-hit
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Tim Booth <tbooth at ceh.ac.uk>,
-           Andreas Tille <tille at debian.org>
+           Andreas Tille <tille at debian.org>,
+           Étienne Mollier <emollier at debian.org>
 Section: science
 Priority: optional
 Build-Depends: debhelper-compat (= 13),


=====================================
debian/tests/run-unit-test
=====================================
@@ -14,15 +14,15 @@ cd $AUTOPKGTEST_TMP
 find . -name "*.gz" -exec gunzip \{\} \;
 
 echo "==== CD_HIT ===="
-cd-hit -i example.fa -o out -c 1.00 -n 5 -M 1000 -T 0
+cd-hit -i example.fa -o out -c 1.00 -n 5 -M 0 -T 0
 echo "==== CD_HIT-2D ===="
-cd-hit-2d -i example.fa -i2 example.fa -o out -c 0.9 -n 5 -M 1000 -T 0
+cd-hit-2d -i example.fa -i2 example.fa -o out -c 0.9 -n 5 -M 0 -T 0
 echo "==== CD_HIT-EST ===="
-cd-hit-est -i example.fa -o out -c 0.95 -n 10 -M 1000 -T 0
+cd-hit-est -i example.fa -o out -c 0.95 -n 10 -M 0 -T 0
 echo "==== CD_HIT-EST-2D ===="
-cd-hit-est-2d -i example.fa -i2 example.fa -o out -c 0.95 -n 10 -M 1000 -T 0
+cd-hit-est-2d -i example.fa -i2 example.fa -o out -c 0.95 -n 10 -M 0 -T 0
 echo "==== CD_HIT-454 ===="
-cd-hit-454 -i example.fa -o out -c 0.95 -n 10 -M 1000 -T 0
+cd-hit-454 -i example.fa -o out -c 0.95 -n 10 -M 0 -T 0
 echo "==== CD_HIT-DIV ===="
 cd-hit-div example.fa output 4
 for i in `ls ./*output*` ; do


=====================================
debian/watch
=====================================
@@ -1,2 +1,4 @@
 version=4
-https://github.com/weizhongli/cdhit/releases .*/archive/V(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)
+opts="filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE at -$1.tar.gz%" \
+https://github.com/weizhongli/cdhit/tags \
+(?:.*?/)?[Vv]?(\d[\d.]*)\.tar\.gz debian uupdate



View it on GitLab: https://salsa.debian.org/med-team/cd-hit/-/compare/b8a44570698ab500753c17d99f9c59e9a6c165db...dc817a506895f9ec3913ed030c96ed72f7be3c61

-- 
View it on GitLab: https://salsa.debian.org/med-team/cd-hit/-/compare/b8a44570698ab500753c17d99f9c59e9a6c165db...dc817a506895f9ec3913ed030c96ed72f7be3c61
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