[med-svn] [Git][med-team/emperor][master] 2 commits: Cosmetics.

[Steffen Möller (@moeller)]

Steffen Möller pushed to branch master at Debian Med / emperor


Commits:
6df3c2b1 by Steffen Moeller at 2021-08-13T17:58:08+02:00
Cosmetics.

- - - - -
e6a16dad by Steffen Moeller at 2021-08-13T17:58:29+02:00
Fixing -doc build.

- - - - -


8 changed files:

- debian/control
- + debian/patches/EditSectionTitle.patch
- debian/patches/series
- debian/python3-emperor-doc.doc-base
- debian/python3-emperor-doc.docs
- + debian/python3-emperor.lintian-overrides
- debian/rules
- debian/upstream/metadata


Changes:

=====================================
debian/control
=====================================
@@ -2,7 +2,8 @@ Source: emperor
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Kerim Ölçer <kerimlcr at gmail.com>,
            Afif Elghraoui <afif at debian.org>,
-           Liubov Chuprikova <chuprikovalv at gmail.com>
+           Liubov Chuprikova <chuprikovalv at gmail.com>,
+           Steffen Moeller <moeller at debian.org>
 Section: science
 Priority: optional
 Build-Depends: debhelper-compat (= 13),
@@ -51,22 +52,22 @@ Description: visualizing high-throughput microbial community data
  constitutes itself as the state of the art for analyzing N-dimensional
  data using principal coordinates analysis.
 
-#Package: python3-emperor-doc
-#Architecture: all
-#Section: doc
-#Depends: ${sphinxdoc:Depends},
-#         ${misc:Depends},
-#         libjs-twitter-bootstrap,
-#         libjs-jquery
-#Description: visualizing high-throughput microbial community data
-# Emperor is an interactive next generation tool for the analysis,
-# visualization and understanding of high throughput microbial
-# ecology datasets.
-# .
-# Due to its tailor-made graphical user interface, delving into a new
-# dataset to elucidate the patterns hidden in the data, has never been
-# easier. Emperor brings a rich set of customizations and modifications
-# that can be integrated into any QIIME or scikit-bio compliant dataset;
-# with lightweight data files and hardware accelerated graphics,
-# constitutes itself as the state of the art for analyzing N-dimensional
-# data using principal coordinates analysis.
+Package: python3-emperor-doc
+Architecture: all
+Section: doc
+Depends: ${sphinxdoc:Depends},
+         ${misc:Depends},
+         libjs-twitter-bootstrap,
+         libjs-jquery
+Description: visualizing high-throughput microbial community data
+ Emperor is an interactive next generation tool for the analysis,
+ visualization and understanding of high throughput microbial
+ ecology datasets.
+ .
+ Due to its tailor-made graphical user interface, delving into a new
+ dataset to elucidate the patterns hidden in the data, has never been
+ easier. Emperor brings a rich set of customizations and modifications
+ that can be integrated into any QIIME or scikit-bio compliant dataset;
+ with lightweight data files and hardware accelerated graphics,
+ constitutes itself as the state of the art for analyzing N-dimensional
+ data using principal coordinates analysis.


=====================================
debian/patches/EditSectionTitle.patch
=====================================
@@ -0,0 +1,15 @@
+Index: emperor/emperor/core.py
+===================================================================
+--- emperor.orig/emperor/core.py
++++ emperor/emperor/core.py
+@@ -38,7 +38,9 @@ JUPYTER_PATH = 'jupyter-template.html'
+ 
+ 
+ class Emperor(object):
+-    """Display principal coordinates analysis plots
++    """
++    Display principal coordinates analysis plots
++    ============================================
+ 
+     Use this object to interactively display a PCoA plot using the Emperor
+     GUI. IPython provides a rich display system that will let you display a


=====================================
debian/patches/series
=====================================
@@ -1,2 +1,3 @@
 do_not_use_custom_numpydoc.patch
 correct_jsdoc_arguments.patch
+EditSectionTitle.patch


=====================================
debian/python3-emperor-doc.doc-base
=====================================
@@ -1,9 +1,9 @@
 Document: python3-emperor-doc
-Title: emperor:
-Author: Liubov Chuprikova
-Abstract:
+Title: emperor
+Author: Authors of Emperor
+Abstract: Documentation shipping with sources
 Section: Science/Biology
 
 Format: html
-Index: /usr/share/doc/python3-emperor/html/index.html
-Files: /usr/share/doc/python3-emperor/html/*
+Index: /usr/share/doc/python3-emperor/jsdoc/index.html
+Files: /usr/share/doc/python3-emperor/jsdoc/*


=====================================
debian/python3-emperor-doc.docs
=====================================
@@ -1 +1,2 @@
 doc/build/html
+doc/build/jsdoc


=====================================
debian/python3-emperor.lintian-overrides
=====================================
@@ -0,0 +1,3 @@
+# This substitutes the jquery-ui.min.css shipping with the source tree
+python3-emperor: breakout-link usr/lib/python3/dist-packages/emperor/support_files/vendor/css/jquery-ui.min.css -> usr/share/javascript/jquery-ui/themes/base/jquery-ui.min.css
+


=====================================
debian/rules
=====================================
@@ -1,7 +1,6 @@
 #!/usr/bin/make -f
-# See debhelper(7) (uncomment to enable)
-# output every command that modifies files on the build system.
-#export DH_VERBOSE = 1
+
+export DH_VERBOSE = 1
 
 export PYBUILD_NAME=emperor
 


=====================================
debian/upstream/metadata
=====================================
@@ -1,3 +1,4 @@
+---
 Bug-Database: https://github.com/biocore/emperor/issues
 Bug-Submit: https://github.com/biocore/emperor/issues/new
 Reference:
@@ -37,6 +38,10 @@ Registry:
    Entry: emperor
  - Name: bio.tools
    Entry: NA
+   Checked: 2021-08-13
+ - Name: guix
+   Entry: NA
+   Checked: 2021-08-13
  - Name: SciCrunch
    Entry: NA
 Repository: https://github.com/biocore/emperor.git



View it on GitLab: https://salsa.debian.org/med-team/emperor/-/compare/ac60138ad8bae5df0e233ea6ebbed0858f6f9e3d...e6a16dadb8a75e8024ce3723e97fd53a7e07bf78

-- 
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