[med-svn] [Git][med-team/qiime][master] Update TODO
Steffen Möller (@moeller)
gitlab at salsa.debian.org
Thu Aug 19 19:29:36 BST 2021
Steffen Möller pushed to branch master at Debian Med / qiime
Commits:
78048899 by Steffen Möller at 2021-08-19T18:29:31+00:00
Update TODO
- - - - -
1 changed file:
- debian/TODO
Changes:
=====================================
debian/TODO
=====================================
@@ -5,16 +5,17 @@ Plugins already accepted (added to the dependencies of qiime)
________________________
- q2cli - Click-based command line interface for QIIME 2
- - q2-cutadapt - QIIME 2 plugin to work with adapters in sequence data
- - q2-types - QIIME 2 plugin defining types for microbiome analysis
-
- q2templates - Design template package for QIIME 2 Plugins
- - q2-metadata - QIIME 2 plugin for working with and visualizing Metadata
+ - q2-cutadapt - QIIME 2 plugin to work with adapters in sequence data
- q2-demux - QIIME 2 plugin for demultiplexing of sequence reads
- q2-quality-filter - QIIME2 plugin for PHRED-based filtering and trimming
- q2-feature-classifier - QIIME 2 plugin supporting taxonomic classification
- q2-feature-table - QIIME 2 plugin supporting operations on feature tables
+ - q2-metadata - QIIME 2 plugin for working with and visualizing Metadata
+ - q2-quality-control (deps: q2-taxa)
+ - q2-sample-classifier (deps: q2-feature-table)
- q2-taxa (D3-scale-chromatic, thenBy, natural-sort JavaScript dependencies)
+ - q2-types - QIIME 2 plugin defining types for microbiome analysis
Plugins already in the NEW QUEUE
@@ -26,22 +27,20 @@ Work presumed ready for upload
- q2-composition (https://github.com/qiime2/q2-composition)
- - q2-sample-classifier (deps: q2-feature-table)
-
- q2-emperor
- EMPEROR (https://github.com/biocore/emperor)
- q2-dada2:
No excuse any more: DADA2 (R package) surfaced as r-bioc-dada2
- - q2-quality-control (deps: q2-taxa)
-
- q2-fragment-insertion (only the first release)
- q2-diversity (deps: q2-feature-table, q2-emperor)
- q2-longitudinal (deps: q2-feature-table, q2-sample-classifier)
+ - unifrac (python)
+
The work already started
________________________
View it on GitLab: https://salsa.debian.org/med-team/qiime/-/commit/7804889973146ead58a4a05340d5b181791dd27e
--
View it on GitLab: https://salsa.debian.org/med-team/qiime/-/commit/7804889973146ead58a4a05340d5b181791dd27e
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