[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille (@tille)
gitlab at salsa.debian.org
Sun Aug 22 02:42:32 BST 2021
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
770fe901 by Andreas Tille at 2021-08-22T01:42:25+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sat, 21 Aug 2021 13:42:04 +0000
+Last-Update: Sun, 22 Aug 2021 01:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
=====================================
outdated_med-packages.txt
=====================================
@@ -1,37 +1,52 @@
-Last-Update: Sat, 21 Aug 2021 13:42:04 +0000
+Last-Update: Sun, 22 Aug 2021 01:42:04 +0000
source | version | upstream_version | uploaders | Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+-------------------------+------------------------
+ augur | 11.3.0-1~0exp0 | 12.0.0 | Andreas Tille,Nilesh Patra | Nilesh Patra | 2021-08-15 11:18:43+00
bamtools | 2.5.1 | 2.5.2 | Andreas Tille,Dominique Belhachemi,Kevin Murray,Michael R. Crusoe | Andreas Tille | 2021-04-15 20:17:33+00
bart | 0.6.00 | 0.7.00 | Martin Uecker | Andreas Tille | 2020-09-21 15:18:48+00
bart-cuda | 0.6.00 | 0.7.00 | Martin Uecker | Martin Uecker | 2021-02-03 22:00:10+00
bbmap | 38.90 | 38.92 | Andreas Tille | Nilesh Patra | 2021-02-05 10:48:39+00
bcbio | 1.2.5 | 1.2.8 | Steffen Moeller | Steffen Moeller | 2021-01-26 13:33:27+00
bcftools | 1.11 | 1.13 | Michael R. Crusoe | Andreas Tille | 2020-10-01 14:35:48+00
- beagle | 5.1-200518 | 210628 | Dylan Aïssi | Dylan Aïssi | 2020-05-31 14:38:17+00
+ beagle | 5.1-200518 | 210628 | Dylan Aïssi | Dylan Aïssi | 2021-08-21 07:48:32+00
biobambam2 | 2.0.179 | 2.0.183 | Andreas Tille,Étienne Mollier | Étienne Mollier | 2021-01-06 21:03:26+00
biojava-live | 1.7.1 | 1.9.5 | Andreas Tille,Olivier Sallou,Steffen Moeller | Andreas Tille | 2021-01-04 16:03:36+00
biomaj3 | 3.1.18 | 3.1.20 | Olivier Sallou | Olivier Sallou | 2021-02-19 11:03:29+00
biomaj3-download | 3.2.4 | 3.2.6 | Olivier Sallou | Andreas Tille | 2021-01-17 10:48:30+00
+ bioperl | 1.7.7 | 1.7.8 | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller | Nilesh Patra | 2021-08-15 13:18:54+00
biosig | 2.1.2 | 2.3.2 | Alois Schlögl,Michael Hanke,Yaroslav Halchenko | Alois Schlögl | 2021-04-15 19:48:24+00
+ bmtk | 0.0+git20210109.8572664 | 0.0+git20210803.b050ba8 | Shayan Doust | Nilesh Patra | 2021-08-15 09:33:30+00
+ busco | 5.0.0 | 5.2.2 | Andreas Tille,Nilesh Patra | Nilesh Patra | 2021-08-15 12:03:53+00
camitk | 4.1.2 | 5.0.2 | Andreas Tille,Emmanuel Promayon | Andreas Tille | 2020-01-20 13:35:07+00
+ changeo | 1.0.2 | 1.1.0 | Nilesh Patra,Steffen Moeller | Nilesh Patra | 2021-08-15 11:19:18+00
+ changeo | 1.0.2-2~0exp0 | 1.1.0 | Nilesh Patra,Steffen Moeller | Nilesh Patra | 2021-08-15 11:19:18+00
+ concurrentqueue | 1.0.2 | 1.0.3 | Steffen Moeller | Nilesh Patra | 2021-08-15 12:49:00+00
cwltool | 3.0.20210124104916 | 3.1.20210628163208 | Michael R. Crusoe | Michael R. Crusoe | 2021-01-25 09:48:25+00
daligner | 1.0+git20200727.ed40ce5 | 1.0+git20210330.f61b8cf | Andreas Tille | Andreas Tille | 2020-08-17 10:48:47+00
damapper | 0.0+git20200322.b2c9d7f | 0.0+git20210330.ab45103 | Shayan Doust | Andreas Tille | 2020-11-13 10:04:28+00
dazzdb | 1.0+git20201103.8d98c37 | 1.0+git20210330.70d2c8e | Andreas Tille,Pranav Ballaney | Andreas Tille | 2021-01-19 09:18:32+00
+ dcm2niix | 1.0.20201102 | 1.0.20210317 | Ghislain Antony Vaillant | Nilesh Patra | 2021-08-15 13:03:41+00
+ edfbrowser | 1.81 | 1.84 | Andreas Tille,Étienne Mollier | Nilesh Patra | 2021-08-15 13:19:11+00
falcon | 1.8.8 | 2.1.4 | Afif Elghraoui | Afif Elghraoui | 2017-12-16 08:49:13+00
fis-gtm | 6.3-014 | 7.0-000 | Amul Shah,Andreas Tille | Andreas Tille | 2021-01-11 13:03:22+00
genometester | 4.0+git20200511.91cecb5 | 4.0+git20210504.7e607f6 | Andreas Tille,Liubov Chuprikova | Steffen Moeller | 2020-05-17 18:35:08+00
+ genometools | 1.6.1 | 1.6.2 | Andreas Tille,Sascha Steinbiss | Sascha Steinbiss | 2021-08-17 09:20:10+00
ggd-utils | 0.0.7 | 1.0.0 | Nilesh Patra | Nilesh Patra | 2020-11-18 13:18:48+00
gjh-asl-json | 0.0+git20180428.eb8720e | 0.0+git20210628.867c5da | Andrei Rozanski | Andreas Tille | 2020-10-26 17:34:11+00
+ gmap | 2021-02-22 | 2021-07-23 | Alexandre Mestiashvili,Andreas Tille,Nilesh Patra,Shaun Jackman | Nilesh Patra | 2021-08-15 13:03:59+00
gnumed-client | 1.8.5 | 1.8.6 | Andreas Tille,Sebastian Hilbert | Andreas Tille | 2021-03-03 20:20:27+00
gnumed-server | 22.15 | 22.16 | Andreas Tille,Sebastian Hilbert | Andreas Tille | 2021-01-24 07:48:25+00
gwyddion | 2.57 | 2.59 | Andreas Tille | Andreas Tille | 2021-01-17 17:49:08+00
+ hdmf | 2.3.0 | 3.1.1 | Yaroslav Halchenko | Nilesh Patra | 2021-08-15 13:50:06+00
htsjdk | 2.23.0 | 2.24.1 | Andreas Tille,Charles Plessy,Olivier Sallou,Vincent Danjean | Olivier Sallou | 2020-09-22 13:48:34+00
htslib | 1.11 | 1.13 | Andreas Tille,Charles Plessy,Michael R. Crusoe,Steffen Moeller | Michael R. Crusoe | 2021-01-02 15:49:45+00
idseq-bench | 0.0~git20200902.8241a9a | 0.0~git20210602.27fb6dc | Sao I Kuan | Andreas Tille | 2021-01-17 17:49:14+00
igdiscover | 0.11 | 0.12.3 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00
igraph | 0.8.5 | 0.9.4 | Andreas Tille,Jerome Benoit | Jerome Benoit | 2020-12-26 16:05:29+00
+ imagej | 1.53g | 1.53k | David Miguel Susano Pinto | Nilesh Patra | 2021-08-15 12:04:33+00
+ imagej | 1.53i-1~0exp0 | 1.53k | David Miguel Susano Pinto | Nilesh Patra | 2021-08-15 12:04:33+00
+ insilicoseq | 1.5.2 | 1.5.3 | Sao I Kuan,Étienne Mollier | Nilesh Patra | 2021-08-15 13:34:49+00
intake | 0.6.1 | 0.6.3 | Shayan Doust,Étienne Mollier | Étienne Mollier | 2021-07-19 19:18:58+00
invesalius | 3.1.99994 | 3.1.99995 | Andreas Tille,Thiago Franco de Moraes | Thiago Franco de Moraes | 2020-05-07 05:19:11+00
ismrmrd | 1.4.2.1 | 1.5.0 | Ghislain Antony Vaillant | Gianfranco Costamagna | 2020-12-22 15:05:59+00
@@ -39,6 +54,8 @@ Last-Update: Sat, 21 Aug 2021 13:42:04 +0000
kineticstools | 0.6.1+git20200729.e3723e0 | 0.6.1+git20210811.276ca9c | Andreas Tille,Étienne Mollier | Étienne Mollier | 2020-11-26 09:49:39+00
king-probe | 2.16.160404+git20200121.9b198c1 | 2.16.160404+git20210306.29542fb | Andreas Tille,Malihe Asemani,Michael Prisant,Pranav Ballaney | Pranav Ballaney | 2020-07-28 04:48:35+00
kissplice | 2.5.3 | 2.5.4 | Andreas Tille,David Parsons | Nilesh Patra | 2020-10-26 05:18:26+00
+ kma | 1.3.10 | 1.3.23 | Andreas Tille,Nilesh Patra | Nilesh Patra | 2021-08-15 07:02:23+00
+ kma | 1.3.14-1~0exp1 | 1.3.23 | Andreas Tille,Nilesh Patra | Nilesh Patra | 2021-08-15 07:02:23+00
libatomic-queue | 0.0+git20201108.d9d66b6 | 0.0+git20210731.aa08199 | Andreas Tille,Nilesh Patra,Steffen Moeller | Michael R. Crusoe | 2021-04-25 13:03:49+00
libbigwig | 0.4.4 | 0.4.6 | Steffen Moeller | Andreas Tille | 2020-03-27 22:19:17+00
libbio-db-ncbihelper-perl | 1.7.6 | 1.7.7 | Michael R. Crusoe | Andreas Tille | 2021-03-04 08:18:58+00
@@ -48,48 +65,74 @@ Last-Update: Sat, 21 Aug 2021 13:42:04 +0000
libthread-pool | 3.0.2 | 4.0.0 | Andreas Tille | Michael R. Crusoe | 2021-01-19 08:25:38+00
libzeep | 5.0.2 | 5.1.0 | Andreas Tille,Maarten L. Hekkelman | Maarten L. Hekkelman | 2020-11-16 17:03:51+00
macsyfinder | 2.0~rc1 | 2.0~rc4 | bertrand Neron | Michael R. Crusoe | 2021-02-11 11:33:21+00
+ mafft | 7.475 | 7.487 | Andreas Tille,Charles Plessy,Nilesh Patra | Nilesh Patra | 2021-08-16 18:29:58+00
milib | 1.13 | 1.14.1 | Steffen Moeller | Andreas Tille | 2021-01-19 09:50:31+00
minia | 3.2.1+git20200522.4960a99 | 3.2.1+git20210526.594d6e3 | Andreas Tille,Olivier Sallou | Steffen Moeller | 2020-05-24 16:09:08+00
mothur | 1.44.3 | 1.45.3 | Andreas Tille,Steffen Moeller,Tomasz Buchert | Andreas Tille | 2020-12-05 06:33:22+00
mummer | 3.23 | 4.0.0.~beta5 | Andreas Tille,Charles Plessy,Steffen Moeller | Nilesh Patra | 2020-12-26 19:06:19+00
mypy | 0.812 | 0.910 | Michael R. Crusoe | Michael R. Crusoe | 2021-02-20 10:03:57+00
+ nanopolish | 0.13.2 | 0.13.3 | Andreas Tille | Nilesh Patra | 2021-08-15 12:50:42+00
ncbi-blast+ | 2.11.0 | 2.12.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2021-02-01 02:50:38+00
ncbi-entrez-direct | 14.6.20210224 | 15.5.20210813 | Aaron M. Ucko | Aaron M. Ucko | 2021-07-08 22:03:29+00
neo | 0.9.0 | 0.10.0 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-11-25 10:49:14+00
+ optimir | 1.0 | 1.1 | Dylan Aïssi | Nilesh Patra | 2021-08-15 13:06:16+00
orthanc-dicomweb | 1.5 | 1.6 | Andreas Tille,Sebastien Jodogne | Sebastien Jodogne | 2021-06-07 09:49:01+00
peptidebuilder | 1.1.0 | 1.4 | Nilesh Patra,Steffen Moeller | Nilesh Patra | 2020-12-06 17:21:33+00
+ phylonium | 1.3 | 1.5 | Fabian Klötzl,Nilesh Patra | Nilesh Patra | 2021-08-15 12:20:15+00
phyx | 1.01 | 1.3 | Andreas Tille | Nilesh Patra | 2020-04-17 20:39:19+00
picard-tools | 2.24.1 | 2.25.7 | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille | 2021-01-28 07:19:59+00
pigx-rnaseq | 0.0.10 | 0.0.18 | Steffen Moeller | Andreas Tille | 2020-10-23 14:34:47+00
- plink2 | 2.00~a3-210203 | 2.00~a3-210804 | Dylan Aïssi | Dylan Aïssi | 2021-02-04 11:36:07+00
+ plink2 | 2.00~a3-210203 | 2.00~a3-210804 | Dylan Aïssi | Dylan Aïssi | 2021-08-21 08:33:59+00
+ plip | 2.1.7 | 2.2.2 | Alexandre Mestiashvili,Nilesh Patra | Nilesh Patra | 2021-08-15 12:07:51+00
+ praat | 6.1.38 | 6.1.51 | Andreas Tille,Rafael Laboissière | Rafael Laboissière | 2021-08-18 18:34:43+00
+ proteinortho | 6.0.28 | 6.0.31 | Andreas Tille,Nilesh Patra | Nilesh Patra | 2021-08-15 12:20:27+00
pybel | 0.14.10 | 0.15.4 | Steffen Moeller | Andreas Tille | 2020-09-29 13:18:42+00
pybigwig | 0.3.17 | 0.3.18 | Diane Trout | Diane Trout | 2019-09-05 04:49:09+00
pynn | 0.7.5 | 0.9.6 | Michael Hanke,Yaroslav Halchenko | Étienne Mollier | 2021-01-20 20:51:33+00
python-anndata | 0.7.5 | 0.7.6 | Diane Trout,Steffen Moeller | Michael R. Crusoe | 2021-02-10 10:18:37+00
+ python-avro | 1.10.1 | 1.10.2 | Afif Elghraoui | Nilesh Patra | 2021-08-15 12:20:36+00
+ python-bids-validator | 1.6.0 | 1.8.1.dev0 | Nilesh Patra,Yaroslav Halchenko | Nilesh Patra | 2021-08-15 13:06:29+00
python-bx | 0.8.9 | 0.8.11 | Michael R. Crusoe,Steffen Moeller | Steffen Moeller | 2021-02-24 21:25:41+00
+ python-cobra | 0.21.0 | 0.22.1 | Afif Elghraoui | Nilesh Patra | 2021-08-15 14:45:47+00
+ python-cutadapt | 3.2 | 3.4 | Andreas Tille,Kevin Murray,Nilesh Patra,Olivier Sallou,Steffen Moeller | Nilesh Patra | 2021-08-15 12:35:07+00
+ python-deeptools | 3.5.0 | 3.5.1 | Steffen Moeller | Nilesh Patra | 2021-08-15 12:50:57+00
+ python-dendropy | 4.5.1 | 4.5.2 | Andreas Tille | Nilesh Patra | 2021-08-15 12:20:44+00
+ python-duckpy | 3.1.0 | 3.2.0 | Sao I Kuan | Nilesh Patra | 2021-08-16 18:58:27+00
python-easydev | 0.10.1 | 0.11.1 | Olivier Sallou | Andreas Tille | 2020-09-29 08:33:47+00
+ python-nanomath | 1.2.0 | 1.2.1 | Andreas Tille,Nilesh Patra | Nilesh Patra | 2021-08-15 14:46:21+00
+ python-pauvre | 0.2.2 | 0.2.3 | Andreas Tille,Étienne Mollier | Nilesh Patra | 2021-08-15 13:39:15+00
python-pbcommand | 2.1.1+git20201023.cc0ed3d | 2.1.1+git20210804.f2bdfd7 | Andreas Tille | Steffen Moeller | 2020-12-07 16:12:44+00
python-pbcore | 1.7.1+git20200430.a127b1e | 1.7.1+git20210804.0933621 | Andreas Tille | Steffen Moeller | 2020-05-05 16:19:13+00
python-pynndescent | 0.5.2 | 0.5.4 | Andreas Tille | Nilesh Patra | 2021-07-03 18:34:34+00
python-pysam | 0.15.4 | 0.16.0.1 | Andreas Tille,Charles Plessy | Andreas Tille | 2020-05-08 19:04:59+00
python-sinfo | 0.3.1 | 1.0.0 | Robbi Nespu | Nilesh Patra | 2021-03-09 06:33:26+00
+ readerwriterqueue | 1.0.3 | 1.0.5 | Steffen Moeller | Nilesh Patra | 2021-08-15 12:35:27+00
+ resfinder | 3.2 | 4.1.5 | Andreas Tille,Nilesh Patra | Nilesh Patra | 2021-08-16 19:00:47+00
resfinder-db | 0.0+git20200408.0322c0d | 0.0+git20210804.7b681f8 | Andreas Tille | Andreas Tille | 2020-04-18 06:34:00+00
samtools | 1.11 | 1.13 | Andreas Tille,Charles Plessy | Andreas Tille | 2020-10-01 15:20:29+00
+ seirsplus | 0.1.4+git20200528.5c04080 | 0.1.4+git20201110.6fe794d | Sao I Kuan | Sao I Kuan | 2021-08-16 11:08:23+00
seriation | 0.1+git20201220.04e6202 | 0.1+git20210125.fc7b8cb | Nilesh Patra | Nilesh Patra | 2020-12-26 06:33:32+00
- shapeit4 | 4.2.0 | 4.2.1 | Dylan Aïssi | Dylan Aïssi | 2021-02-04 11:04:31+00
+ shapeit4 | 4.2.0 | 4.2.1 | Dylan Aïssi | Dylan Aïssi | 2021-08-21 08:49:22+00
simpleitk | 1.0.1 | 2.1.0 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-30 10:06:08+00
smart-open | 1.11.1 | 5.1.0 | Sao I Kuan | Sao I Kuan | 2020-07-05 14:33:51+00
sorted-nearest | 0.0+git20200319.8204815 | 0.0+git20210524.610d16a | Nilesh Patra | Andreas Tille | 2020-07-15 09:06:56+00
spaln | 2.4.1 | 2.4.5 | Steffen Moeller | Helmut Grohne | 2021-01-05 17:04:26+00
+ stacks | 2.55 | 2.59 | Andreas Tille,Tim Booth | Nilesh Patra | 2021-08-15 14:48:42+00
+ stringtie | 2.1.4 | 2.1.6 | Nilesh Patra,Steffen Moeller | Nilesh Patra | 2021-08-15 14:49:16+00
+ subread | 2.0.1 | 2.0.3 | Alexandre Mestiashvili,Andreas Tille,Nilesh Patra | Nilesh Patra | 2021-08-15 12:51:46+00
suitename | 0.3.070919+git20180613.ebb1325 | 0.3.070919+git20210701.8b28da6 | Andreas Tille,Michael Prisant | Nilesh Patra | 2020-11-11 10:04:35+00
+ swissknife | 1.79 | 1.80 | Andreas Tille,Nilesh Patra,Steffen Moeller | Nilesh Patra | 2021-08-15 12:51:52+00
t-coffee | 13.41.0.28bdc39 | 13.45.0.4846264 | Andreas Tille,Steffen Moeller | Etienne Mollier | 2020-06-17 19:49:21+00
tao-config | 0.0+git20200604.84a7383 | 0.0+git20210721.f947e07 | Shayan Doust | Andreas Tille | 2020-07-20 20:26:07+00
tao-json | 0.0+git20200604.f357d72 | 0.0+git20210731.4259225 | Shayan Doust | Andreas Tille | 2020-07-20 20:51:27+00
+ trim-galore | 0.6.6 | 0.6.7 | Steffen Moeller | Nilesh Patra | 2021-08-17 16:06:42+00
trinityrnaseq | 2.11.0 | 2.12.0 | Michael R. Crusoe | Michael R. Crusoe | 2021-01-19 13:36:20+00
+ trnascan-se | 2.0.7 | 2.0.9 | Étienne Mollier | Nilesh Patra | 2021-08-15 13:54:07+00
vg | 1.30.0 | 1.33.0 | Michael R. Crusoe | Michael R. Crusoe | 2021-01-27 12:20:10+00
vienna-rna | 2.4.17 | 2.4.18 | Olivier Sallou,Steffen Moeller | Andreas Tille | 2020-12-11 10:50:57+00
+ virulencefinder | 2.0.3+git20190809.dde157a | 2.0.4 | Andreas Tille | Nilesh Patra | 2021-08-16 19:27:32+00
xmedcon | 0.16.3 | 0.21.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2021-01-14 21:07:57+00
-(87 rows)
+(130 rows)
source | id | severity | title
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/770fe901326176efa2ea43fb9208e48e0150d245
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