[med-svn] [Git][med-team/ea-utils][master] 3 commits: d/p/arm64.patch: Get autopkgtests running on !amd64 and !i386

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / ea-utils


Commits:
d377a416 by Nilesh Patra at 2021-08-24T20:33:18+05:30
d/p/arm64.patch: Get autopkgtests running on !amd64 and !i386

- - - - -
f1b97df3 by Nilesh Patra at 2021-08-24T20:40:53+05:30
Bump Standards-Version to 4.6.0 (no changes needed)

- - - - -
e3bf006d by Nilesh Patra at 2021-08-24T20:40:53+05:30
Upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/control
- + debian/patches/arm64.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+ea-utils (1.1.2+dfsg-8) unstable; urgency=medium
+
+  * Team Upload.
+  * d/p/arm64.patch: Get autopkgtests running on !amd64 and !i386
+  * Bump Standards-Version to 4.6.0 (no changes needed)
+
+ -- Nilesh Patra <nilesh at debian.org>  Tue, 24 Aug 2021 20:35:08 +0530
+
 ea-utils (1.1.2+dfsg-7) unstable; urgency=medium
 
   [ Shruti Sridhar ]


=====================================
debian/control
=====================================
@@ -9,7 +9,7 @@ Build-Depends: debhelper-compat (= 13),
                zlib1g-dev,
                libgsl-dev,
                libsparsehash-dev,
-Standards-Version: 4.5.1
+Standards-Version: 4.6.0
 Vcs-Browser: https://salsa.debian.org/med-team/ea-utils
 Vcs-Git: https://salsa.debian.org/med-team/ea-utils.git
 Homepage: https://expressionanalysis.github.io/ea-utils/


=====================================
debian/patches/arm64.patch
=====================================
@@ -0,0 +1,91 @@
+Description: Get tests running on arm64 via fix with making char signed where needed
+Author: Nilesh Patra <nilesh at debian.org>
+Last-Update: 2021-08-24
+--- a/fastq-clipper.c
++++ b/fastq-clipper.c
+@@ -46,7 +46,7 @@
+ int hd(char *a, char *b, int n);
+ int debug=0;
+ int main (int argc, char **argv) {
+-	char c;
++	signed char c;
+ 	bool eol;
+ 	int nmin = 4, nkeep = 15, xmax=-1, pctdiff = 20;
+ 	char *outfile = NULL;
+--- a/fastq-join.c
++++ b/fastq-join.c
+@@ -35,7 +35,7 @@
+ int debug=0;
+ 
+ int main (int argc, char **argv) {
+-	char c;
++	signed char c;
+ 	int mismatch = 0;
+ 	char *in[3] = {0,0,0};
+ 	char *out[5];
+--- a/fastq-mcf.c
++++ b/fastq-mcf.c
+@@ -201,7 +201,7 @@
+ };
+ 
+ int main (int argc, char **argv) {
+-	char c;
++	signed char c;
+ 	bool eol;
+ 	int nmin = 1, nkeep = 19, nmax=0;
+     int qf2_min_len=0;
+--- a/fastq-multx.c
++++ b/fastq-multx.c
+@@ -93,7 +93,7 @@
+ static float pickmaxpct=0.10;
+ 
+ int main (int argc, char **argv) {
+-	char c;
++	signed char c;
+ 	bool trim = true;
+ 	int mismatch = 1;
+ 	int distance = 2;
+--- a/fastq-stats.cpp
++++ b/fastq-stats.cpp
+@@ -170,7 +170,7 @@
+ int main( int argc, char**argv ) {
+ 
+ 	int index;
+-	char c;
++	signed char c;
+ 	optind = 0;
+ 	char *filename = NULL;
+ 
+--- a/sam-stats.cpp
++++ b/sam-stats.cpp
+@@ -214,7 +214,7 @@
+ 	bool multi=0, newonly=0, inbam=0;
+     int fq_out=0;
+     const char *rnafile = NULL;
+-	char c;
++	signed char c;
+ 	optind = 0;
+     struct option long_options[] = {
+                {"fastq", no_argument, NULL, 'o'},
+--- a/tidx/tidx.cpp
++++ b/tidx/tidx.cpp
+@@ -36,7 +36,7 @@
+     int skip_i = 0;
+     bool dump = 0;
+ 
+-    char c;
++    signed char c;
+     while ( (c = getopt (argc, argv, "Dlhdt:r:c:b:T:e:p:i:s:a:nB")) != -1) {
+         switch (c) {
+             case 'd':
+--- a/varcall.cpp
++++ b/varcall.cpp
+@@ -273,7 +273,7 @@
+ }
+ 
+ int main(int argc, char **argv) {
+-	char c;
++	signed char c;
+ 	const char *noiseout=NULL;
+ 	const char *ref=NULL;
+ 	optind = 0;


=====================================
debian/patches/series
=====================================
@@ -2,3 +2,4 @@ makefile.patch
 hardening.patch
 name-space-conflict.patch
 cross.patch
+arm64.patch



View it on GitLab: https://salsa.debian.org/med-team/ea-utils/-/compare/76ec453d68af60a4b429e2da4cf1a7ef64c614c9...e3bf006d01905e2be8a4c2f69af7ad3f5ba37791

-- 
View it on GitLab: https://salsa.debian.org/med-team/ea-utils/-/compare/76ec453d68af60a4b429e2da4cf1a7ef64c614c9...e3bf006d01905e2be8a4c2f69af7ad3f5ba37791
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