[med-svn] [Git][med-team/ivar][master] 3 commits: update debian/tests/ref/out-variants.tsv
Étienne Mollier (@emollier)
gitlab at salsa.debian.org
Sat Aug 28 01:08:18 BST 2021
Étienne Mollier pushed to branch master at Debian Med / ivar
Commits:
d58e1165 by Étienne Mollier at 2021-08-28T01:57:20+02:00
update debian/tests/ref/out-variants.tsv
Update reference data to reflect the new values produced by the
combination of samtools 1.13 and ivar 1.3.1, following update of
htslib to 1.13.
The divergence between former reference is not extensive, and is not
part of upstream test suite. Plus, other tests just work alright.
This may be undone, in case further issues crop up around ivar, and it
turns out the initial data was appropriate.
- - - - -
bd181255 by Étienne Mollier at 2021-08-28T02:04:58+02:00
d/control: add myself to uploaders
- - - - -
f7462dca by Étienne Mollier at 2021-08-28T02:07:35+02:00
ready changelog for unstable
- - - - -
3 changed files:
- debian/changelog
- debian/control
- debian/tests/ref/out-variants.tsv
Changes:
=====================================
debian/changelog
=====================================
@@ -1,6 +1,7 @@
-ivar (1.3.1+dfsg-1) UNRELEASED; urgency=medium
+ivar (1.3.1+dfsg-1) unstable; urgency=medium
- * Team upload.
+ [ Étienne Mollier ]
+ * Fix watchfile to detect new versions on github (routine-update)
* New upstream version
* Standards-Version: 4.6.0 (routine-update)
* Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine-
@@ -8,14 +9,15 @@ ivar (1.3.1+dfsg-1) UNRELEASED; urgency=medium
* Apply multi-arch hints.
+ ivar-doc: Add Multi-Arch: foreign.
- -- Étienne Mollier <emollier at debian.org> Fri, 27 Aug 2021 20:18:35 +0200
+ [ Nilesh Patra ]
+ * Get ivar building
-ivar (1.3+dfsg-1.1) UNRELEASED; urgency=medium
-
- * Non-maintainer upload.
- * Fix watchfile to detect new versions on github (routine-update)
+ [ Étienne Mollier ]
+ * update debian/tests/ref/out-variants.tsv to reflect changes in htslib
+ 1.13; fixes autopkgtest mismatch output.
+ * d/control: add myself to uploaders
- -- Étienne Mollier <emollier at debian.org> Fri, 27 Aug 2021 20:18:29 +0200
+ -- Étienne Mollier <emollier at debian.org> Sat, 28 Aug 2021 02:07:04 +0200
ivar (1.3+dfsg-1) unstable; urgency=medium
=====================================
debian/control
=====================================
@@ -1,6 +1,7 @@
Source: ivar
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Andreas Tille <tille at debian.org>
+Uploaders: Andreas Tille <tille at debian.org>,
+ Étienne Mollier <emollier at debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
=====================================
debian/tests/ref/out-variants.tsv
=====================================
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+Consensus_ZI-27_threshold_0_quality_20 3593 N T 0 0 0 2 1 58 1 2 0.166667 FALSE NA NA NA NA NA
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Consensus_ZI-27_threshold_0_quality_20 3598 N C 0 0 0 2 1 39 1 2 0.333333 FALSE NA NA NA NA NA
Consensus_ZI-27_threshold_0_quality_20 3599 N T 0 0 0 2 1 39 1 2 0.333333 FALSE NA NA NA NA NA
Consensus_ZI-27_threshold_0_quality_20 3600 N C 0 0 0 2 1 39 1 2 0.333333 FALSE NA NA NA NA NA
@@ -2833,62 +2833,62 @@ Consensus_ZI-27_threshold_0_quality_20 4457 N A 0 0 0 1 0 38 1 1 1 FALSE NA NA N
Consensus_ZI-27_threshold_0_quality_20 4458 N T 0 0 0 1 0 38 1 1 1 FALSE NA NA NA NA NA
Consensus_ZI-27_threshold_0_quality_20 4459 N G 0 0 0 1 0 38 1 1 1 FALSE NA NA NA NA NA
Consensus_ZI-27_threshold_0_quality_20 4460 N C 0 0 0 1 0 30 1 1 0.5 FALSE NA NA NA NA NA
-Consensus_ZI-27_threshold_0_quality_20 4461 N A 0 0 0 1 0 70 1 1 0.5 FALSE NA NA NA NA NA
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Consensus_ZI-27_threshold_0_quality_20 4517 N G 0 0 0 2 2 30 1 2 0.333333 FALSE NA NA NA NA NA
Consensus_ZI-27_threshold_0_quality_20 4518 N G 0 0 0 2 2 38 1 2 0.333333 FALSE NA NA NA NA NA
Consensus_ZI-27_threshold_0_quality_20 4519 N T 0 0 0 2 2 39 1 2 0.333333 FALSE NA NA NA NA NA
@@ -3171,33 +3171,33 @@ Consensus_ZI-27_threshold_0_quality_20 4795 N G 0 0 0 3 0 37 1 3 0.05 FALSE NA N
Consensus_ZI-27_threshold_0_quality_20 4796 N G 0 0 0 3 0 37 1 3 0.1 FALSE NA NA NA NA NA
Consensus_ZI-27_threshold_0_quality_20 4797 N T 0 0 0 3 0 37 1 3 0.1 FALSE NA NA NA NA NA
Consensus_ZI-27_threshold_0_quality_20 4798 N C 0 0 0 3 0 36 1 3 0.1 FALSE NA NA NA NA NA
-Consensus_ZI-27_threshold_0_quality_20 4799 N G 0 0 0 3 0 60 1 3 0.0285714 FALSE NA NA NA NA NA
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-Consensus_ZI-27_threshold_0_quality_20 4825 N T 0 0 0 3 2 46 1 3 0.0285714 FALSE NA NA NA NA NA
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+Consensus_ZI-27_threshold_0_quality_20 4819 N T 0 0 0 4 3 51 1 4 0.00793651 TRUE NA NA NA NA NA
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+Consensus_ZI-27_threshold_0_quality_20 4825 N T 0 0 0 3 3 46 1 3 0.0285714 FALSE NA NA NA NA NA
Consensus_ZI-27_threshold_0_quality_20 4826 N G 0 0 0 3 3 37 1 3 0.1 FALSE NA NA NA NA NA
Consensus_ZI-27_threshold_0_quality_20 4827 N C 0 0 0 3 3 38 1 3 0.1 FALSE NA NA NA NA NA
Consensus_ZI-27_threshold_0_quality_20 4828 N C 0 0 0 3 3 37 1 3 0.1 FALSE NA NA NA NA NA
@@ -3583,53 +3583,53 @@ Consensus_ZI-27_threshold_0_quality_20 5670 N C 0 0 0 1 0 38 1 1 1 FALSE NA NA N
Consensus_ZI-27_threshold_0_quality_20 5671 N C 0 0 0 1 0 38 1 1 1 FALSE NA NA NA NA NA
Consensus_ZI-27_threshold_0_quality_20 5672 N A 0 0 0 1 0 38 1 1 1 FALSE NA NA NA NA NA
Consensus_ZI-27_threshold_0_quality_20 5673 N T 0 0 0 1 0 30 1 1 0.5 FALSE NA NA NA NA NA
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-Consensus_ZI-27_threshold_0_quality_20 5675 N C 0 0 0 3 2 50 1 3 0.05 FALSE NA NA NA NA NA
-Consensus_ZI-27_threshold_0_quality_20 5676 N C 0 0 0 3 2 50 1 3 0.05 FALSE NA NA NA NA NA
-Consensus_ZI-27_threshold_0_quality_20 5677 N T 0 0 0 3 2 50 1 3 0.05 FALSE NA NA NA NA NA
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View it on GitLab: https://salsa.debian.org/med-team/ivar/-/compare/92a30f8208c52a39333a8c38b2ae7c2bda2e1a1c...f7462dcad6edb5c5b6c206c8e19a9e5bd7a5df63
--
View it on GitLab: https://salsa.debian.org/med-team/ivar/-/compare/92a30f8208c52a39333a8c38b2ae7c2bda2e1a1c...f7462dcad6edb5c5b6c206c8e19a9e5bd7a5df63
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