[med-svn] [Git][med-team/adapterremoval][master] 11 commits: routine-update: Fix watchfile to detect new versions on github

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / adapterremoval


Commits:
47c1b151 by Andreas Tille at 2021-08-29T06:59:03+02:00
routine-update: Fix watchfile to detect new versions on github

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98514686 by Andreas Tille at 2021-08-29T07:00:07+02:00
New upstream version 2.3.2
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301eb289 by Andreas Tille at 2021-08-29T07:00:07+02:00
routine-update: New upstream version

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200f89a8 by Andreas Tille at 2021-08-29T07:00:13+02:00
Update upstream source from tag 'upstream/2.3.2'

Update to upstream version '2.3.2'
with Debian dir 3d050d6bf2ddf06e1a69ec16a4a64c9881340301
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c114f742 by Andreas Tille at 2021-08-29T07:00:13+02:00
routine-update: Standards-Version: 4.6.0

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e99db78e by Andreas Tille at 2021-08-29T07:00:13+02:00
routine-update: debhelper-compat 13

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bdde08b6 by Andreas Tille at 2021-08-29T07:00:21+02:00
routine-update: Add salsa-ci file

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d0bbd9e7 by Andreas Tille at 2021-08-29T07:00:21+02:00
routine-update: Rules-Requires-Root: no

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568a9cd9 by Andreas Tille at 2021-08-29T07:00:33+02:00
Apply multi-arch hints.
+ adapterremoval-examples: Add Multi-Arch: foreign.

Changes-By: apply-multiarch-hints

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5057dd3a by Andreas Tille at 2021-08-29T07:10:05+02:00
Deactivate patches concerning benchmark script since this was removed upstream

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9eabe95b by Andreas Tille at 2021-08-29T07:13:49+02:00
Upload to unstable

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29 changed files:

- .travis.yml
- AdapterRemoval.1
- CHANGES.md
- Makefile
- README.md
- − benchmark/README.md
- − benchmark/adapters/adapter_1.fasta
- − benchmark/adapters/adapter_1.pairs
- − benchmark/adapters/adapter_1.txt
- − benchmark/adapters/adapter_2.fasta
- − benchmark/adapters/adapter_2.txt
- − benchmark/adapters/adapters.fasta
- − benchmark/adapters/mixed.fasta
- − benchmark/adapters/mixed.table
- − benchmark/adapters/mixed_1.fasta
- − benchmark/adapters/mixed_1.txt
- − benchmark/adapters/mixed_2.txt
- − benchmark/benchmark.sh
- − benchmark/patches/leeHom.patch
- − benchmark/patches/pIRS_111.patch
- − benchmark/patches/pear.patch
- − benchmark/profiles/humNew.PE100.matrix.gz
- − benchmark/profiles/phixv2.InDel.matrix
- − benchmark/scripts/evaluate.py
- − benchmark/scripts/evaluate_dmux.py
- − benchmark/scripts/evaluate_id.py
- − benchmark/scripts/extend_profile.py
- − benchmark/scripts/merge_tables.py
- − benchmark/scripts/shuffle_fasta.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/adapterremoval/-/compare/039cf0dca33ed375589dfa45ccb1f4fe0827511e...9eabe95b5c9cf5fa5e767a523e17ab5699e5ab9d

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View it on GitLab: https://salsa.debian.org/med-team/adapterremoval/-/compare/039cf0dca33ed375589dfa45ccb1f4fe0827511e...9eabe95b5c9cf5fa5e767a523e17ab5699e5ab9d
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