Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
757ced87 by Andreas Tille at 2021-12-02T13:42:23+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,147 +1,137 @@
-Last-Update: Thu, 02 Dec 2021 01:42:04 +0000
+Last-Update: Thu, 02 Dec 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 179 | {imaging,covid-19} |
- orthanc | 98 | {covid-19,imaging,practice} |
+ dcmtk | 176 | {imaging,covid-19} |
+ orthanc | 97 | {covid-19,imaging,practice} |
orthanc-wsi | 54 | {imaging,oncology,his,practice,laboratory,covid-19} |
amide | 36 | {imaging} |
- htsjdk | 35 | {bio-dev} |
- dicomscope | 26 | {imaging} |
- dcm2niix | 24 | {imaging} |
- gdcm | 24 | {imaging-dev} |
- dicom3tools | 23 | {imaging} |
- openslide | 20 | {imaging} |
- gdcm | 16 | {covid-19,imaging} |
- odin | 16 | {imaging,imaging-dev} |
+ htsjdk | 34 | {bio-dev} |
+ dicomscope | 27 | {imaging} |
+ dcm2niix | 25 | {imaging} |
+ dicom3tools | 25 | {imaging} |
+ gdcm | 23 | {imaging-dev} |
+ openslide | 21 | {imaging} |
+ gdcm | 18 | {covid-19,imaging} |
+ odin | 18 | {imaging,imaging-dev} |
+ mrtrix3 | 17 | {imaging} |
gnumed-server | 15 | {practice,covid-19} |
- mrtrix3 | 15 | {imaging} |
- ngs-sdk | 15 | {bio-dev} |
- invesalius | 13 | {imaging} |
- minc-tools | 13 | {imaging} |
+ minc-tools | 15 | {imaging} |
+ insighttoolkit4 | 13 | {imaging-dev} |
+ ngs-sdk | 13 | {bio-dev} |
orthanc-webviewer | 13 | {imaging} |
dicomnifti | 11 | {imaging} |
- insighttoolkit4 | 11 | {imaging-dev} |
+ invesalius | 11 | {imaging} |
+ pixelmed | 11 | {imaging} |
+ adun.app | 10 | {bio} |
gdcm | 10 | {imaging-dev} |
+ king | 10 | {typesetting,imaging} |
+ mia | 10 | {imaging} |
nifticlib | 10 | {imaging} |
- adun.app | 9 | {bio} |
- king | 9 | {typesetting,imaging} |
- pixelmed | 9 | {imaging} |
- biojava-live | 8 | {bio-dev} |
- libminc | 8 | {imaging-dev} |
- mia | 8 | {imaging} |
+ plastimatch | 10 | {imaging} |
nifticlib | 8 | {imaging-dev} |
- librg-utils-perl | 7 | {bio} |
- plastimatch | 7 | {imaging} |
+ biojava-live | 7 | {bio-dev} |
+ libminc | 7 | {imaging-dev} |
+ jebl2 | 6 | {bio-dev} |
lagan | 6 | {bio} |
- openslide | 6 | {imaging-dev} |
- orthanc-dicomweb | 6 | {covid-19,imaging} |
- jebl2 | 5 | {bio-dev} |
+ librg-utils-perl | 6 | {bio} |
+ ngs-sdk | 6 | {bio-dev} |
ngs-sdk | 5 | {bio-dev} |
nifti2dicom | 5 | {imaging} |
+ openslide | 5 | {imaging-dev} |
+ orthanc-dicomweb | 5 | {covid-19,imaging} |
+ oscar | 5 | {data,tools,practice} |
rambo-k | 5 | {bio} |
+ treeview | 5 | {bio-phylogeny,bio} |
getdata | 4 | {bio} |
- libdivsufsort | 4 | {bio-dev} |
libncl | 4 | {bio} |
- libsbml | 4 | {bio-dev} |
- melting | 4 | {bio,cloud} |
nipype | 4 | {imaging,imaging-dev} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
- oscar | 4 | {data,tools,practice} |
runcircos-gui | 4 | {bio} |
- treeview | 4 | {bio-phylogeny,bio} |
+ stacks | 4 | {bio} |
+ tracetuner | 4 | {bio} |
+ arden | 3 | {cloud,bio} |
bart-view | 3 | {imaging} |
+ dicompyler | 3 | {oncology} |
elastix | 3 | {imaging} |
embassy-domalign | 3 | {bio,cloud} |
+ embassy-domsearch | 3 | {bio,cloud} |
+ libdivsufsort | 3 | {bio-dev} |
+ libpal-java | 3 | {bio-dev} |
+ libsbml | 3 | {bio-dev} |
+ melting | 3 | {bio,cloud} |
+ obitools | 3 | {bio} |
phyutility | 3 | {cloud,bio} |
pymia | 3 | {imaging-dev} |
saint | 3 | {bio} |
salmon | 3 | {covid-19,bio} |
- stacks | 3 | {bio} |
- tracetuner | 3 | {bio} |
- arden | 2 | {cloud,bio} |
+ sibsim4 | 3 | {bio,cloud} |
+ staden | 3 | {bio} |
+ anfo | 2 | {bio,cloud} |
+ assemblytics | 2 | {bio} |
beast-mcmc | 2 | {bio-phylogeny,bio} |
bio-tradis | 2 | {bio-dev,bio} |
+ bitseq | 2 | {bio} |
blimps | 2 | {bio} |
canu | 2 | {bio} |
clonalorigin | 2 | {bio} |
embassy-domainatrix | 2 | {bio,cloud} |
- embassy-domsearch | 2 | {bio,cloud} |
ghmm | 2 | {bio} |
ipig | 2 | {bio} |
jellyfish1 | 2 | {bio} |
lamarc | 2 | {bio} |
- libbio-mage-utils-perl | 2 | {bio-dev} |
- obitools | 2 | {bio} |
orthanc-gdcm | 2 | {imaging} |
papyrus | 2 | {imaging-dev} |
piler | 2 | {bio} |
proalign | 2 | {bio,bio-phylogeny} |
rtax | 2 | {bio,cloud} |
- sibsim4 | 2 | {bio,cloud} |
sift | 2 | {bio} |
- staden | 2 | {bio} |
+ spread-phy | 2 | {bio-phylogeny,bio} |
+ zalign | 2 | {bio,cloud} |
acedb | 1 | {cloud,bio} |
- anfo | 1 | {bio,cloud} |
- assemblytics | 1 | {bio} |
atropos | 1 | {bio} |
- bambamc | 1 | {bio-dev} |
biomaj3-cli | 1 | {cloud} |
- bitseq | 1 | {bio} |
brig | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
clonalframeml | 1 | {bio,covid-19} |
cmtk | 1 | {imaging} |
delly | 1 | {covid-19,bio} |
- dicompyler | 1 | {oncology} |
fastml | 1 | {bio} |
fsm-lite | 1 | {bio} |
gatb-core | 1 | {bio} |
- gatb-core | 1 | {bio-dev} |
hinge | 1 | {bio} |
- libbpp-core | 1 | {bio-dev} |
- libbpp-phyl | 1 | {bio-dev} |
- libbpp-phyl-omics | 1 | {bio-dev} |
- libbpp-popgen | 1 | {bio-dev} |
- libbpp-raa | 1 | {bio-dev} |
- libbpp-seq | 1 | {bio-dev} |
- libbpp-seq-omics | 1 | {bio-dev} |
- libchado-perl | 1 | {bio-dev} |
- libgenome | 1 | {bio-dev} |
- libgkarrays | 1 | {bio-dev} |
- libhmsbeagle | 1 | {bio-dev} |
+ jmodeltest | 1 | {bio,bio-phylogeny} |
+ libbio-mage-utils-perl | 1 | {bio-dev} |
libics | 1 | {covid-19,imaging-dev} |
- libmems | 1 | {bio-dev} |
- libmuscle | 1 | {bio-dev} |
- libncl | 1 | {bio-dev} |
- libpal-java | 1 | {bio-dev} |
- libqes | 1 | {bio-dev} |
librdp-taxonomy-tree-java | 1 | {bio-dev} |
- libseqlib | 1 | {bio-dev} |
- libstatgen | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
mauve-aligner | 1 | {bio} |
metaphlan2 | 1 | {bio} |
mhap | 1 | {bio-ngs,bio} |
microbegps | 1 | {bio} |
- ncbi-vdb | 1 | {bio-dev} |
opencfu | 1 | {laboratory} |
orthanc-python | 1 | {covid-19} |
- pbseqlib | 1 | {bio-dev} |
pigx-rnaseq | 1 | {covid-19,bio} |
placnet | 1 | {bio} |
plasmidid | 1 | {covid-19,bio} |
plasmidseeker | 1 | {bio} |
+ pscan-chip | 1 | {bio} |
python-wdlparse | 1 | {bio-dev} |
+ qcumber | 1 | {bio} |
rdp-alignment | 1 | {bio} |
rdp-classifier | 1 | {bio} |
- spread-phy | 1 | {bio-phylogeny,bio} |
- srf | 1 | {bio-dev} |
+ sga | 1 | {bio} |
+ soapaligner | 1 | {bio} |
+ soapsnp | 1 | {bio} |
+ sprai | 1 | {bio} |
+ suitename | 1 | {bio} |
+ surankco | 1 | {bio} |
thesias | 1 | {covid-19,bio} |
+ tvc | 1 | {bio} |
varna | 1 | {bio} |
vienna-rna | 1 | {covid-19,bio} |
- zalign | 1 | {bio,cloud} |
+ bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
@@ -155,24 +145,42 @@ Last-Update: Thu, 02 Dec 2021 01:42:04 +0000
emmax | 0 | {bio} |
emperor | 0 | {bio} |
fis-gtm | 0 | {his} |
+ gatb-core | 0 | {bio-dev} |
gifticlib | 0 | {imaging-dev} |
htscodecs | 0 | {bio-dev,covid-19} |
intake | 0 | {bio,bio-dev} |
- jmodeltest | 0 | {bio,bio-phylogeny} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
+ libbpp-core | 0 | {bio-dev} |
+ libbpp-phyl | 0 | {bio-dev} |
+ libbpp-phyl-omics | 0 | {bio-dev} |
+ libbpp-popgen | 0 | {bio-dev} |
+ libbpp-raa | 0 | {bio-dev} |
+ libbpp-seq | 0 | {bio-dev} |
+ libbpp-seq-omics | 0 | {bio-dev} |
+ libchado-perl | 0 | {bio-dev} |
libctapimkt | 0 | {practice} |
+ libgenome | 0 | {bio-dev} |
+ libgkarrays | 0 | {bio-dev} |
+ libhmsbeagle | 0 | {bio-dev} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {bio-dev,covid-19} |
+ libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
+ libmuscle | 0 | {bio-dev} |
+ libncl | 0 | {bio-dev} |
libpsortb | 0 | {bio-dev} |
+ libqes | 0 | {bio-dev} |
+ libseqlib | 0 | {bio-dev} |
+ libstatgen | 0 | {bio-dev} |
libxdf | 0 | {imaging-dev} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
milib | 0 | {bio-dev,covid-19} |
+ ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
@@ -181,28 +189,20 @@ Last-Update: Thu, 02 Dec 2021 01:42:04 +0000
pbseqlib | 0 | {bio-dev} |
pique | 0 | {bio} |
pplacer | 0 | {covid-19,bio,bio-phylogeny} |
- pscan-chip | 0 | {bio} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {covid-19,bio-dev} |
- qcumber | 0 | {bio} |
+ python-seqcluster | 0 | {bio} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
- sga | 0 | {bio} |
shovill | 0 | {bio,covid-19} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
skesa | 0 | {bio} |
smrtanalysis | 0 | {bio,covid-19} |
- soapaligner | 0 | {bio} |
- soapsnp | 0 | {bio} |
spaln | 0 | {bio,covid-19} |
- sprai | 0 | {bio} |
- suitename | 0 | {bio} |
- surankco | 0 | {bio} |
+ srf | 0 | {bio-dev} |
tophat-recondition | 0 | {bio,covid-19} |
trace2dbest | 0 | {bio} |
- tvc | 0 | {bio} |
varscan | 0 | {bio,covid-19} |
xdffileio | 0 | {imaging-dev} |
mssstest | -1 | {tools} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/757ced8793d763cd67a129f81741357157ad2a91
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