[med-svn] [Git][med-team/libstatgen][master] 4 commits: SONAME bump from libstatgen0 to libstatgen1

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / libstatgen


Commits:
8ea0ee9a by Étienne Mollier at 2021-12-02T22:18:45+01:00
SONAME bump from libstatgen0 to libstatgen1

Closes: #996409

- - - - -
d3e4e716 by Étienne Mollier at 2021-12-02T22:46:38+01:00
d/copyright: update years

- - - - -
ff4f9f64 by Étienne Mollier at 2021-12-02T22:56:14+01:00
Add spelling.patch: fix typos caught by lintian

- - - - -
ec0c6b9a by Étienne Mollier at 2021-12-02T23:05:28+01:00
ready to upload to experimental

- - - - -


7 changed files:

- debian/changelog
- debian/control
- debian/copyright
- debian/libstatgen0.symbols → debian/libstatgen1.symbols
- debian/patches/series
- + debian/patches/spelling.patch
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+libstatgen (1.0.15-3~0exp0) experimental; urgency=medium
+
+  * Team upload.
+  * SONAME bump from libstatgen0 to libstatgen1 (Closes: #996409)
+  * d/copyright: update years
+  * Add spelling.patch: fix typos caught by lintian
+
+ -- Étienne Mollier <emollier at debian.org>  Thu, 02 Dec 2021 23:04:37 +0100
+
 libstatgen (1.0.15-2) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/control
=====================================
@@ -14,7 +14,7 @@ Vcs-Git: https://salsa.debian.org/med-team/libstatgen.git
 Homepage: https://genome.sph.umich.edu/wiki/C++_Library:_libStatGen
 Rules-Requires-Root: no
 
-Package: libstatgen0
+Package: libstatgen1
 Architecture: any-amd64
 Multi-Arch: same
 Section: libs
@@ -36,7 +36,7 @@ Package: libstatgen-dev
 Architecture: any-amd64
 Multi-Arch: same
 Section: libdevel
-Depends: libstatgen0 (= ${binary:Version}),
+Depends: libstatgen1 (= ${binary:Version}),
          ${misc:Depends}
 Suggests: libstatgen-doc
 Description: development files for the libStatGen


=====================================
debian/copyright
=====================================
@@ -12,7 +12,7 @@ Files: bam/*
        general/*
        glf/*
        vcf/*
-Copyright: 2010-2013 Regents of the University of Michigan, Hyun Min Kang, Matthew Flickenger, Matthew Snyder and Goncalo Abecasis
+Copyright: 2010-2015 Regents of the University of Michigan, Hyun Min Kang, Matthew Flickenger, Matthew Snyder and Goncalo Abecasis
 License: GPL-3+
 
 Files: general/Random.cpp
@@ -44,7 +44,7 @@ License: Expat
 Comment: Based on samtools version 981 (retrieved 7/26/11).
 
 Files: debian/*
-Copyright: 2018 Dylan Aïssi <bob.dybian at gmail.com>
+Copyright: 2018-2021 Dylan Aïssi <bob.dybian at gmail.com>
 License: GPL-3+
 
 License: GPL-3+


=====================================
debian/libstatgen0.symbols → debian/libstatgen1.symbols
=====================================
@@ -1,5 +1,5 @@
-libStatGen.so.0 libstatgen0 #MINVER#
-* Build-Depends-Package: libstatgen0
+libStatGen.so.1 libstatgen1 #MINVER#
+* Build-Depends-Package: libstatgen1
  InputPromptWidth at Base 1.0.14
  (c++)"MemoryInfo(double)@Base" 1.0.14
  (c++)"QuickSort2(void*, void*, unsigned long, unsigned long, int (*)(void const*, void const*))@Base" 1.0.14


=====================================
debian/patches/series
=====================================
@@ -1 +1,2 @@
 Fix_compilation_flags.patch
+spelling.patch


=====================================
debian/patches/spelling.patch
=====================================
@@ -0,0 +1,28 @@
+Description: fix typos caught by lintian
+Author: Étienne Mollier <emollier at debian.org>
+Forwarded: no
+Last-Update: 2021-12-02
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- libstatgen.orig/general/PedigreeDescription.cpp
++++ libstatgen/general/PedigreeDescription.cpp
+@@ -242,7 +242,7 @@
+         printf("Map file column labels\n"
+                "  -- COLUMN 1, Expecting MARKER_ID, Read %s\n"
+                "  -- COLUMN 2, Expecting MARKER_NAME, Read %s\n"
+-               "  -- COLUMN 3, Expection BASE_PAIR_POSITION, Read %s\n\n",
++               "  -- COLUMN 3, Expecting BASE_PAIR_POSITION, Read %s\n\n",
+                (const char *)(tokens[0]), (const char *)(tokens[1]),
+                (const char *)(tokens[2]));
+ 
+--- libstatgen.orig/general/PedigreeLoader.cpp
++++ libstatgen/general/PedigreeLoader.cpp
+@@ -146,7 +146,7 @@
+                         default :
+                             new_status = atoi(affection);
+                             if (new_status < 0 || new_status > 2)
+-                                error("Incorrect formating for affection status "
++                                error("Incorrect formatting for affection status "
+                                       "Col %d, Affection %s\n"
+                                       "Family: %s  Individual: %s  Status: %s",
+                                       col, (const char *) affectionNames[a],


=====================================
debian/rules
=====================================
@@ -5,7 +5,7 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all
 
 # Define SONAME for shared library
 LIBNAME=libStatGen
-SONUMBER=0
+SONUMBER=1
 LIBSHARED=${LIBNAME}.so.${SONUMBER}
 
 %:



View it on GitLab: https://salsa.debian.org/med-team/libstatgen/-/compare/362e0a5866e6311cd32c4975dbe671e4e0746b61...ec0c6b9a1fda50c55c5108e8ae7add250831fd04

-- 
View it on GitLab: https://salsa.debian.org/med-team/libstatgen/-/compare/362e0a5866e6311cd32c4975dbe671e4e0746b61...ec0c6b9a1fda50c55c5108e8ae7add250831fd04
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