Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
f7f48028 by Andreas Tille at 2021-12-05T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,2 +1,210 @@
-Last-Update: Sun, 05 Dec 2021 01:42:04 +0000
+Last-Update: Sun, 05 Dec 2021 13:42:04 +0000
+
+ Source | Vote | Tasks | Tags
+-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
+ dcmtk | 173 | {imaging,covid-19} |
+ orthanc | 95 | {covid-19,imaging,practice} |
+ orthanc-wsi | 54 | {imaging,oncology,his,practice,laboratory,covid-19} |
+ amide | 37 | {imaging} |
+ htsjdk | 32 | {bio-dev} |
+ dicom3tools | 26 | {imaging} |
+ dicomscope | 26 | {imaging} |
+ dcm2niix | 25 | {imaging} |
+ gdcm | 21 | {imaging-dev} |
+ gdcm | 18 | {covid-19,imaging} |
+ mrtrix3 | 17 | {imaging} |
+ odin | 17 | {imaging,imaging-dev} |
+ gnumed-server | 16 | {practice,covid-19} |
+ minc-tools | 15 | {imaging} |
+ openslide | 15 | {imaging} |
+ ngs-sdk | 14 | {bio-dev} |
+ orthanc-webviewer | 13 | {imaging} |
+ gdcm | 12 | {imaging-dev} |
+ insighttoolkit4 | 12 | {imaging-dev} |
+ invesalius | 12 | {imaging} |
+ dicomnifti | 11 | {imaging} |
+ king | 11 | {typesetting,imaging} |
+ pixelmed | 11 | {imaging} |
+ mia | 10 | {imaging} |
+ nifticlib | 10 | {imaging} |
+ plastimatch | 10 | {imaging} |
+ adun.app | 9 | {bio} |
+ nifticlib | 8 | {imaging-dev} |
+ biojava-live | 7 | {bio-dev} |
+ libminc | 7 | {imaging-dev} |
+ jebl2 | 6 | {bio-dev} |
+ librg-utils-perl | 6 | {bio} |
+ ngs-sdk | 6 | {bio-dev} |
+ oscar | 6 | {data,tools,practice} |
+ lagan | 5 | {bio} |
+ nifti2dicom | 5 | {imaging} |
+ openslide | 5 | {imaging-dev} |
+ orthanc-dicomweb | 5 | {covid-19,imaging} |
+ rambo-k | 5 | {bio} |
+ treeview | 5 | {bio-phylogeny,bio} |
+ getdata | 4 | {bio} |
+ libncl | 4 | {bio} |
+ nipype | 4 | {imaging,imaging-dev} |
+ orthanc-postgresql | 4 | {imaging} |
+ runcircos-gui | 4 | {bio} |
+ salmon | 4 | {covid-19,bio} |
+ stacks | 4 | {bio} |
+ staden | 4 | {bio} |
+ tracetuner | 4 | {bio} |
+ arden | 3 | {cloud,bio} |
+ bart-view | 3 | {imaging} |
+ dicompyler | 3 | {oncology} |
+ elastix | 3 | {imaging} |
+ embassy-domalign | 3 | {bio,cloud} |
+ embassy-domsearch | 3 | {bio,cloud} |
+ libdivsufsort | 3 | {bio-dev} |
+ libsbml | 3 | {bio-dev} |
+ melting | 3 | {bio,cloud} |
+ obitools | 3 | {bio} |
+ orthanc-mysql | 3 | {imaging} |
+ phyutility | 3 | {cloud,bio} |
+ pymia | 3 | {imaging-dev} |
+ saint | 3 | {bio} |
+ sibsim4 | 3 | {bio,cloud} |
+ anfo | 2 | {bio,cloud} |
+ beast-mcmc | 2 | {bio-phylogeny,bio} |
+ bio-tradis | 2 | {bio-dev,bio} |
+ bitseq | 2 | {bio} |
+ canu | 2 | {bio} |
+ clonalorigin | 2 | {bio} |
+ embassy-domainatrix | 2 | {bio,cloud} |
+ ghmm | 2 | {bio} |
+ ipig | 2 | {bio} |
+ jellyfish1 | 2 | {bio} |
+ lamarc | 2 | {bio} |
+ libpal-java | 2 | {bio-dev} |
+ libvistaio | 2 | {imaging-dev} |
+ orthanc-gdcm | 2 | {imaging} |
+ papyrus | 2 | {imaging-dev} |
+ pigx-rnaseq | 2 | {covid-19,bio} |
+ piler | 2 | {bio} |
+ proalign | 2 | {bio,bio-phylogeny} |
+ rtax | 2 | {bio,cloud} |
+ spread-phy | 2 | {bio-phylogeny,bio} |
+ zalign | 2 | {bio,cloud} |
+ acedb | 1 | {cloud,bio} |
+ assemblytics | 1 | {bio} |
+ atropos | 1 | {bio} |
+ biomaj3-cli | 1 | {cloud} |
+ blimps | 1 | {bio} |
+ brig | 1 | {bio} |
+ cat-bat | 1 | {covid-19,bio} |
+ clonalframeml | 1 | {bio,covid-19} |
+ cmtk | 1 | {imaging} |
+ delly | 1 | {covid-19,bio} |
+ fastml | 1 | {bio} |
+ fsm-lite | 1 | {bio} |
+ gatb-core | 1 | {bio} |
+ hinge | 1 | {bio} |
+ jmodeltest | 1 | {bio,bio-phylogeny} |
+ libbio-mage-utils-perl | 1 | {bio-dev} |
+ libics | 1 | {covid-19,imaging-dev} |
+ librdp-taxonomy-tree-java | 1 | {bio-dev} |
+ mauve-aligner | 1 | {bio} |
+ metaphlan2 | 1 | {bio} |
+ mhap | 1 | {bio-ngs,bio} |
+ microbegps | 1 | {bio} |
+ opencfu | 1 | {laboratory} |
+ orthanc-python | 1 | {covid-19} |
+ placnet | 1 | {bio} |
+ plasmidid | 1 | {covid-19,bio} |
+ plasmidseeker | 1 | {bio} |
+ pscan-chip | 1 | {bio} |
+ python-wdlparse | 1 | {bio-dev} |
+ qcumber | 1 | {bio} |
+ rdp-alignment | 1 | {bio} |
+ rdp-classifier | 1 | {bio} |
+ sga | 1 | {bio} |
+ sift | 1 | {bio} |
+ soapaligner | 1 | {bio} |
+ soapsnp | 1 | {bio} |
+ sprai | 1 | {bio} |
+ suitename | 1 | {bio} |
+ surankco | 1 | {bio} |
+ thesias | 1 | {covid-19,bio} |
+ tvc | 1 | {bio} |
+ varna | 1 | {bio} |
+ vienna-rna | 1 | {covid-19,bio} |
+ bambamc | 0 | {bio-dev} |
+ biojava4-live | 0 | {bio-dev} |
+ biosyntax | 0 | {bio} |
+ bmtk | 0 | {psychology} |
+ camp | 0 | {imaging-dev} |
+ ctn | 0 | {imaging-dev} |
+ cufflinks | 0 | {bio,cloud} |
+ cutesv | 0 | {bio} |
+ dextractor | 0 | {bio,covid-19} |
+ eegdev | 0 | {imaging-dev} |
+ emboss-explorer | 0 | {bio} |
+ emmax | 0 | {bio} |
+ emperor | 0 | {bio} |
+ fis-gtm | 0 | {his} |
+ gatb-core | 0 | {bio-dev} |
+ gifticlib | 0 | {imaging-dev} |
+ htscodecs | 0 | {bio-dev,covid-19} |
+ intake | 0 | {bio,bio-dev} |
+ kmerresistance | 0 | {bio} |
+ libbigwig | 0 | {bio-dev} |
+ libbioparser-dev | 0 | {bio-dev} |
+ libbpp-core | 0 | {bio-dev} |
+ libbpp-phyl | 0 | {bio-dev} |
+ libbpp-phyl-omics | 0 | {bio-dev} |
+ libbpp-popgen | 0 | {bio-dev} |
+ libbpp-raa | 0 | {bio-dev} |
+ libbpp-seq | 0 | {bio-dev} |
+ libbpp-seq-omics | 0 | {bio-dev} |
+ libchado-perl | 0 | {bio-dev} |
+ libctapimkt | 0 | {practice} |
+ libgenome | 0 | {bio-dev} |
+ libgkarrays | 0 | {bio-dev} |
+ libhmsbeagle | 0 | {bio-dev} |
+ libjloda-java | 0 | {bio-dev} |
+ libmaus2 | 0 | {bio-dev,covid-19} |
+ libmems | 0 | {bio-dev} |
+ libmialm | 0 | {imaging-dev} |
+ libmuscle | 0 | {bio-dev} |
+ libncl | 0 | {bio-dev} |
+ libpsortb | 0 | {bio-dev} |
+ libqes | 0 | {bio-dev} |
+ libseqlib | 0 | {bio-dev} |
+ libstatgen | 0 | {bio-dev} |
+ libxdf | 0 | {imaging-dev} |
+ metastudent-data | 0 | {bio} |
+ metastudent-data-2 | 0 | {bio} |
+ mia | 0 | {imaging-dev} |
+ miaviewit | 0 | {imaging-dev} |
+ milib | 0 | {bio-dev,covid-19} |
+ ncbi-vdb | 0 | {bio-dev} |
+ nifticlib | 0 | {imaging-dev} |
+ opensurgsim | 0 | {imaging-dev} |
+ orthanc-imagej | 0 | {imaging} |
+ parallel-fastq-dump | 0 | {covid-19} |
+ pbcopper | 0 | {bio-dev} |
+ pbseqlib | 0 | {bio-dev} |
+ pique | 0 | {bio} |
+ pplacer | 0 | {covid-19,bio,bio-phylogeny} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
+ python-seqcluster | 0 | {bio} |
+ resfinder-db | 0 | {bio} |
+ sbmltoolbox | 0 | {bio-dev} |
+ seq-gen | 0 | {bio} |
+ shovill | 0 | {bio,covid-19} |
+ sight | 0 | {imaging-dev} |
+ simpleitk | 0 | {imaging-dev} |
+ skesa | 0 | {bio} |
+ smrtanalysis | 0 | {bio,covid-19} |
+ spaln | 0 | {bio,covid-19} |
+ srf | 0 | {bio-dev} |
+ tophat-recondition | 0 | {bio,covid-19} |
+ trace2dbest | 0 | {bio} |
+ varscan | 0 | {bio,covid-19} |
+ xdffileio | 0 | {imaging-dev} |
+ mssstest | -1 | {tools} |
+ tipp | -1 | {covid-19,bio} |
+(234 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f7f4802864e94feaf394dc15c14590e9e1e9a6a2
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