[med-svn] [Git][med-team/samtools][master] 6 commits: routine-update: New upstream version

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / samtools


Commits:
d9595e92 by Andreas Tille at 2021-12-07T08:57:22+01:00
routine-update: New upstream version

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b14cda59 by Andreas Tille at 2021-12-07T08:57:23+01:00
New upstream version 1.14
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691f3aa0 by Andreas Tille at 2021-12-07T08:57:41+01:00
Update upstream source from tag 'upstream/1.14'

Update to upstream version '1.14'
with Debian dir 59157f3e7e626bcb67af25eeae86b0c476b7abb6
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b929904f by Andreas Tille at 2021-12-07T09:12:21+01:00
Cleanup Breaks/Replaces

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aedf2068 by Andreas Tille at 2021-12-07T09:12:29+01:00
Refresh patches

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46030bbf by Andreas Tille at 2021-12-07T14:56:30+01:00
Upload to experimental

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30 changed files:

- Makefile
- NEWS
- README
- bam.c
- bam.h
- bam2bcf.c
- bam2depth.c
- bam_aux.c
- − bam_endian.h
- bam_fastq.c
- bam_import.c
- bam_markdup.c
- bam_plcmd.c
- bam_reheader.c
- + bam_samples.c
- bam_sort.c
- bam_tview_curses.c
- bamtk.c
- coverage.c
- debian/changelog
- debian/control
- − debian/patches/fix-ftbfs-mvprintw.patch
- debian/patches/reproducible.patch
- debian/patches/samtools-fasta-q-whatis.patch
- debian/patches/series
- doc/samtools-addreplacerg.1
- doc/samtools-ampliconclip.1
- doc/samtools-ampliconstats.1
- doc/samtools-bedcov.1
- doc/samtools-calmd.1


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/samtools/-/compare/7a4e09b040bb91267a89ab198c0ba3b2cdf21a65...46030bbf6ef15a85192fba8b5e8499ae1e729c42

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View it on GitLab: https://salsa.debian.org/med-team/samtools/-/compare/7a4e09b040bb91267a89ab198c0ba3b2cdf21a65...46030bbf6ef15a85192fba8b5e8499ae1e729c42
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