[med-svn] [Git][med-team/busco][master] 2 commits: Do not autospec mocked instances

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / busco


Commits:
6a2021af by Nilesh Patra at 2021-12-12T21:54:21+05:30
Do not autospec mocked instances

- - - - -
bb549f8b by Nilesh Patra at 2021-12-12T21:59:07+05:30
Upload to unstable

- - - - -


2 changed files:

- debian/changelog
- debian/patches/fix-and-disable-tests.patch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+busco (5.2.2-2) unstable; urgency=medium
+
+  * Do not autospec mocked instances (Closes: #1001535)
+
+ -- Nilesh Patra <nilesh at debian.org>  Sun, 12 Dec 2021 21:54:24 +0530
+
 busco (5.2.2-1) unstable; urgency=medium
 
   * New upstream version 5.2.2


=====================================
debian/patches/fix-and-disable-tests.patch
=====================================
@@ -159,3 +159,32 @@ Last-Update: 2021-07-02
      )
      def test_config_main_validated(self, mock_config, *args):
          config_manager = ConfigManager.BuscoConfigManager(self.params)
+--- a/tests/unittests/GenomeAnalysis_unittests.py
++++ b/tests/unittests/GenomeAnalysis_unittests.py
+@@ -54,7 +54,7 @@
+ 
+     @patch("busco.analysis.GenomeAnalysis.NucleotideAnalysis.__init__")
+     @patch("busco.analysis.GenomeAnalysis.BuscoAnalysis.config.get")
+-    @patch("busco.analysis.GenomeAnalysis.BuscoAnalysis.config", autospec=True)
++    @patch("busco.analysis.GenomeAnalysis.BuscoAnalysis.config")
+     @patch("busco.analysis.GenomeAnalysis.MetaeukRunner")
+     @patch("busco.analysis.BuscoAnalysis.HMMERRunner")
+     def test_init_tools_eukaryota_metaeuk(self, mock_hmmer, mock_metaeuk, *args):
+@@ -65,7 +65,7 @@
+ 
+     @patch("busco.analysis.GenomeAnalysis.NucleotideAnalysis.__init__")
+     @patch("busco.analysis.GenomeAnalysis.BuscoAnalysis.config.get")
+-    @patch("busco.analysis.GenomeAnalysis.BuscoAnalysis.config", autospec=True)
++    @patch("busco.analysis.GenomeAnalysis.BuscoAnalysis.config")
+     @patch("busco.analysis.GenomeAnalysis.ProdigalRunner")
+     @patch("busco.analysis.BuscoAnalysis.HMMERRunner")
+     def test_init_tools_prokaryota(self, mock_hmmer, mock_prodigal, *args):
+@@ -76,7 +76,7 @@
+ 
+     @patch("busco.analysis.GenomeAnalysis.NucleotideAnalysis.__init__")
+     @patch("busco.analysis.GenomeAnalysis.BuscoAnalysis.config.get")
+-    @patch("busco.analysis.GenomeAnalysis.BuscoAnalysis.config", autospec=True)
++    @patch("busco.analysis.GenomeAnalysis.BuscoAnalysis.config")
+     @patch("busco.analysis.GenomeAnalysis.BuscoAnalysis.run_analysis")
+     @patch("busco.analysis.GenomeAnalysis.BuscoAnalysis.run_hmmer")
+     @patch("busco.analysis.GenomeAnalysis.GenomeAnalysisEukaryotesMetaeuk._run_metaeuk")



View it on GitLab: https://salsa.debian.org/med-team/busco/-/compare/d10452c672d3c3c0fda959e14d41b472290a2025...bb549f8b9ace242eb436dbb16532c811421456ff

-- 
View it on GitLab: https://salsa.debian.org/med-team/busco/-/compare/d10452c672d3c3c0fda959e14d41b472290a2025...bb549f8b9ace242eb436dbb16532c811421456ff
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20211212/f83e2b53/attachment-0001.htm>