[med-svn] [Git][med-team/kissplice][master] 10 commits: Remove bcalm source since there is a separate bcalm package

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / kissplice


Commits:
eb371d76 by Andreas Tille at 2021-12-13T07:58:59+01:00
Remove bcalm source since there is a separate bcalm package

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d6e6debf by Andreas Tille at 2021-12-13T07:59:29+01:00
routine-update: New upstream version

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c51d7d1a by Andreas Tille at 2021-12-13T07:59:30+01:00
New upstream version 2.5.4+dfsg
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e6af7a84 by Andreas Tille at 2021-12-13T07:59:40+01:00
Update upstream source from tag 'upstream/2.5.4+dfsg'

Update to upstream version '2.5.4+dfsg'
with Debian dir 5710c2cddc36ffcfe736fa210ba518d1b67b2d5b
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031398e9 by Andreas Tille at 2021-12-13T07:59:41+01:00
routine-update: Standards-Version: 4.6.0

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866d8830 by Andreas Tille at 2021-12-13T07:59:41+01:00
routine-update: debhelper-compat 13

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d87297ee by Andreas Tille at 2021-12-13T08:04:29+01:00
Refresh patches - the patched files are removed together with bcalm source

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c69d6609 by Andreas Tille at 2021-12-13T08:13:27+01:00
Use Debian packaged bcalm

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a4a670c0 by Andreas Tille at 2021-12-13T08:20:59+01:00
Cleanup rules from references to bcalm and means to build gatb-core

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481077bb by Andreas Tille at 2021-12-13T08:22:17+01:00
Upload to unstable

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30 changed files:

- CMakeLists.txt
- ChangeLog
- + README.bcalm
- + README.md
- − bcalm/.travis.yml
- − bcalm/CMakeLists.txt
- − bcalm/LICENSE
- − bcalm/VERSION
- − bcalm/bidirected-graphs-in-bcalm2/bidirected-graphs-in-bcalm2.md
- − bcalm/bidirected-graphs-in-bcalm2/fig1.png
- − bcalm/bidirected-graphs-in-bcalm2/fig2.png
- − bcalm/bidirected-graphs-in-bcalm2/fig33.png
- − bcalm/bidirected-graphs-in-bcalm2/fig4.png
- − bcalm/bidirected-graphs-in-bcalm2/fig5.png
- − bcalm/bidirected-graphs-in-bcalm2/fig66.png
- − bcalm/bidirected-graphs-in-bcalm2/fig7.png
- − bcalm/bidirected-graphs-in-bcalm2/fig8.png
- − bcalm/bidirected-graphs-in-bcalm2/figs.pptx
- − bcalm/example/circular_unitigs_unittests/CMD
- − bcalm/example/circular_unitigs_unittests/README
- − bcalm/example/circular_unitigs_unittests/test1.fa
- − bcalm/example/circular_unitigs_unittests/test2.fa
- − bcalm/example/circular_unitigs_unittests/test3.fa
- − bcalm/example/pufferize/refs.fa
- − bcalm/example/pufferize/run.sh
- − bcalm/example/run-tiny.sh
- − bcalm/example/tiny_read.fa
- − bcalm/example/uf/testUF.cpp
- − bcalm/gatb-core/.travis.yml
- − bcalm/gatb-core/gatb-core/CMakeLists.txt


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/kissplice/-/compare/5c762e5786eaec7bd60180454eb8fa6a23fdc65e...481077bb1f5ed74e1d0861ba436681bb5789039b

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View it on GitLab: https://salsa.debian.org/med-team/kissplice/-/compare/5c762e5786eaec7bd60180454eb8fa6a23fdc65e...481077bb1f5ed74e1d0861ba436681bb5789039b
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