Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
bccf7ad1 by Andreas Tille at 2021-12-14T13:42:23+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,136 +1,148 @@
-Last-Update: Tue, 14 Dec 2021 01:42:05 +0000
+Last-Update: Tue, 14 Dec 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 174 | {imaging,covid-19} |
orthanc | 98 | {covid-19,practice,imaging} |
orthanc-wsi | 52 | {covid-19,oncology,his,laboratory,practice,imaging} |
- amide | 31 | {imaging} |
- dicom3tools | 26 | {imaging} |
- htsjdk | 26 | {bio-dev} |
- dcm2niix | 24 | {imaging} |
- dicomscope | 22 | {imaging} |
- gdcm | 20 | {imaging-dev} |
- gdcm | 16 | {imaging,covid-19} |
+ amide | 32 | {imaging} |
+ dicom3tools | 28 | {imaging} |
+ htsjdk | 28 | {bio-dev} |
+ dcm2niix | 26 | {imaging} |
+ dicomscope | 23 | {imaging} |
+ gdcm | 19 | {imaging-dev} |
+ gdcm | 18 | {imaging,covid-19} |
+ invesalius | 15 | {imaging} |
gnumed-server | 14 | {covid-19,practice} |
- invesalius | 13 | {imaging} |
- ngs-sdk | 13 | {bio-dev} |
+ minc-tools | 14 | {imaging} |
+ openslide | 14 | {imaging} |
+ mrtrix3 | 13 | {imaging} |
orthanc-webviewer | 13 | {imaging} |
+ pixelmed | 13 | {imaging} |
gdcm | 12 | {imaging-dev} |
- minc-tools | 12 | {imaging} |
- mrtrix3 | 12 | {imaging} |
+ ngs-sdk | 12 | {bio-dev} |
adun.app | 11 | {bio} |
- pixelmed | 11 | {imaging} |
+ mia | 11 | {imaging} |
+ plastimatch | 11 | {imaging} |
+ dicomnifti | 10 | {imaging} |
insighttoolkit4 | 10 | {imaging-dev} |
- mia | 10 | {imaging} |
- openslide | 10 | {imaging} |
- dicomnifti | 9 | {imaging} |
- plastimatch | 9 | {imaging} |
- biojava-live | 8 | {bio-dev} |
- jebl2 | 8 | {bio-dev} |
+ biojava-live | 9 | {bio-dev} |
+ jebl2 | 9 | {bio-dev} |
king | 8 | {typesetting,imaging} |
+ nifticlib | 8 | {imaging} |
+ lagan | 7 | {bio} |
ngs-sdk | 7 | {bio-dev} |
nifticlib | 7 | {imaging-dev} |
- lagan | 6 | {bio} |
+ libncl | 6 | {bio} |
ngs-sdk | 6 | {bio-dev} |
- nifticlib | 6 | {imaging} |
+ openslide | 6 | {imaging-dev} |
orthanc-dicomweb | 6 | {covid-19,imaging} |
+ rambo-k | 6 | {bio} |
+ treeview | 6 | {bio,bio-phylogeny} |
+ embassy-domalign | 5 | {cloud,bio} |
libminc | 5 | {imaging-dev} |
- libncl | 5 | {bio} |
librg-utils-perl | 5 | {bio} |
- openslide | 5 | {imaging-dev} |
- rambo-k | 5 | {bio} |
- treeview | 5 | {bio,bio-phylogeny} |
+ nifti2dicom | 5 | {imaging} |
+ runcircos-gui | 5 | {bio} |
+ salmon | 5 | {bio,covid-19} |
+ staden | 5 | {bio} |
+ tracetuner | 5 | {bio} |
+ arden | 4 | {bio,cloud} |
dicompyler | 4 | {oncology} |
- embassy-domalign | 4 | {cloud,bio} |
+ elastix | 4 | {imaging} |
+ embassy-domainatrix | 4 | {cloud,bio} |
+ embassy-domsearch | 4 | {cloud,bio} |
+ melting | 4 | {cloud,bio} |
nifti2dicom | 4 | {imaging} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
oscar | 4 | {data,tools,practice} |
- runcircos-gui | 4 | {bio} |
- salmon | 4 | {bio,covid-19} |
+ phyutility | 4 | {cloud,bio} |
+ saint | 4 | {bio} |
+ sibsim4 | 4 | {bio,cloud} |
stacks | 4 | {bio} |
- staden | 4 | {bio} |
- tracetuner | 4 | {bio} |
- arden | 3 | {bio,cloud} |
- elastix | 3 | {imaging} |
- embassy-domainatrix | 3 | {cloud,bio} |
- embassy-domsearch | 3 | {cloud,bio} |
+ anfo | 3 | {bio,cloud} |
+ beast-mcmc | 3 | {bio,bio-phylogeny} |
+ bio-tradis | 3 | {bio,bio-dev} |
+ bitseq | 3 | {bio} |
+ brig | 3 | {bio} |
+ canu | 3 | {bio} |
+ clonalorigin | 3 | {bio} |
+ gatb-core | 3 | {bio} |
getdata | 3 | {bio} |
+ ghmm | 3 | {bio} |
+ ipig | 3 | {bio} |
+ jellyfish1 | 3 | {bio} |
+ lamarc | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
+ librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
- melting | 3 | {cloud,bio} |
- nifti2dicom | 3 | {imaging} |
+ mhap | 3 | {bio,bio-ngs} |
+ nipype | 3 | {imaging,imaging-dev} |
obitools | 3 | {bio} |
- phyutility | 3 | {cloud,bio} |
+ pigx-rnaseq | 3 | {bio,covid-19} |
+ proalign | 3 | {bio,bio-phylogeny} |
pymia | 3 | {imaging-dev} |
- saint | 3 | {bio} |
- sibsim4 | 3 | {bio,cloud} |
- anfo | 2 | {bio,cloud} |
+ rdp-classifier | 3 | {bio} |
+ rtax | 3 | {cloud,bio} |
+ spread-phy | 3 | {bio,bio-phylogeny} |
+ zalign | 3 | {cloud,bio} |
+ assemblytics | 2 | {bio} |
+ atropos | 2 | {bio} |
bart-view | 2 | {imaging} |
- beast-mcmc | 2 | {bio,bio-phylogeny} |
- bio-tradis | 2 | {bio,bio-dev} |
- bitseq | 2 | {bio} |
+ biomaj3-cli | 2 | {cloud} |
blimps | 2 | {bio} |
- brig | 2 | {bio} |
- canu | 2 | {bio} |
- clonalorigin | 2 | {bio} |
- gatb-core | 2 | {bio} |
- ghmm | 2 | {bio} |
- ipig | 2 | {bio} |
- jellyfish1 | 2 | {bio} |
- lamarc | 2 | {bio} |
- librdp-taxonomy-tree-java | 2 | {bio-dev} |
+ cat-bat | 2 | {bio,covid-19} |
+ clonalframeml | 2 | {bio,covid-19} |
+ delly | 2 | {covid-19,bio} |
+ fastml | 2 | {bio} |
+ fsm-lite | 2 | {bio} |
+ hinge | 2 | {bio} |
+ jmodeltest | 2 | {bio-phylogeny,bio} |
+ libpal-java | 2 | {bio-dev} |
libvistaio | 2 | {imaging-dev} |
- mhap | 2 | {bio,bio-ngs} |
- nipype | 2 | {imaging,imaging-dev} |
+ mauve-aligner | 2 | {bio} |
+ microbegps | 2 | {bio} |
orthanc-gdcm | 2 | {imaging} |
orthanc-python | 2 | {covid-19} |
- pigx-rnaseq | 2 | {bio,covid-19} |
- proalign | 2 | {bio,bio-phylogeny} |
- rdp-classifier | 2 | {bio} |
- rtax | 2 | {cloud,bio} |
+ piler | 2 | {bio} |
+ placnet | 2 | {bio} |
+ plasmidid | 2 | {covid-19,bio} |
+ plasmidseeker | 2 | {bio} |
+ pscan-chip | 2 | {bio} |
+ qcumber | 2 | {bio} |
+ rdp-alignment | 2 | {bio} |
+ sga | 2 | {bio} |
sift | 2 | {bio} |
- spread-phy | 2 | {bio,bio-phylogeny} |
- zalign | 2 | {cloud,bio} |
+ soapaligner | 2 | {bio} |
+ soapsnp | 2 | {bio} |
+ sprai | 2 | {bio} |
+ suitename | 2 | {bio} |
+ surankco | 2 | {bio} |
+ thesias | 2 | {bio,covid-19} |
+ tvc | 2 | {bio} |
+ varna | 2 | {bio} |
acedb | 1 | {cloud,bio} |
- assemblytics | 1 | {bio} |
- atropos | 1 | {bio} |
- biomaj3-cli | 1 | {cloud} |
- cat-bat | 1 | {bio,covid-19} |
- clonalframeml | 1 | {bio,covid-19} |
cmtk | 1 | {imaging} |
- delly | 1 | {covid-19,bio} |
+ cufflinks | 1 | {bio,cloud} |
+ dextractor | 1 | {bio,covid-19} |
emboss-explorer | 1 | {bio} |
- fastml | 1 | {bio} |
- fsm-lite | 1 | {bio} |
- hinge | 1 | {bio} |
- jmodeltest | 1 | {bio-phylogeny,bio} |
+ emmax | 1 | {bio} |
+ kmerresistance | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libncl | 1 | {bio-dev} |
- libpal-java | 1 | {bio-dev} |
- mauve-aligner | 1 | {bio} |
metaphlan2 | 1 | {bio} |
- microbegps | 1 | {bio} |
opencfu | 1 | {laboratory} |
papyrus | 1 | {imaging-dev} |
- piler | 1 | {bio} |
- placnet | 1 | {bio} |
- plasmidid | 1 | {covid-19,bio} |
- plasmidseeker | 1 | {bio} |
- pscan-chip | 1 | {bio} |
+ pique | 1 | {bio} |
+ pplacer | 1 | {covid-19,bio,bio-phylogeny} |
python-wdlparse | 1 | {bio-dev} |
- qcumber | 1 | {bio} |
- rdp-alignment | 1 | {bio} |
- sga | 1 | {bio} |
- soapaligner | 1 | {bio} |
- soapsnp | 1 | {bio} |
- sprai | 1 | {bio} |
- suitename | 1 | {bio} |
- surankco | 1 | {bio} |
- thesias | 1 | {bio,covid-19} |
- tvc | 1 | {bio} |
- varna | 1 | {bio} |
+ shovill | 1 | {covid-19,bio} |
+ skesa | 1 | {bio} |
+ spaln | 1 | {covid-19,bio} |
+ tophat-recondition | 1 | {bio,covid-19} |
+ trace2dbest | 1 | {bio} |
+ varscan | 1 | {covid-19,bio} |
vienna-rna | 1 | {bio,covid-19} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
@@ -138,18 +150,14 @@ Last-Update: Tue, 14 Dec 2021 01:42:05 +0000
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
ctn | 0 | {imaging-dev} |
- cufflinks | 0 | {bio,cloud} |
cutesv | 0 | {bio} |
- dextractor | 0 | {bio,covid-19} |
eegdev | 0 | {imaging-dev} |
- emmax | 0 | {bio} |
emperor | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
gifticlib | 0 | {imaging-dev} |
htscodecs | 0 | {bio-dev,covid-19} |
intake | 0 | {bio-dev,bio} |
- kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
libbpp-core | 0 | {bio-dev} |
@@ -187,25 +195,18 @@ Last-Update: Tue, 14 Dec 2021 01:42:05 +0000
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- pique | 0 | {bio} |
- pplacer | 0 | {covid-19,bio,bio-phylogeny} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {covid-19,bio-dev} |
+ python-seqcluster | 0 | {bio} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
- shovill | 0 | {covid-19,bio} |
simpleitk | 0 | {imaging-dev} |
- skesa | 0 | {bio} |
smrtanalysis | 0 | {bio,covid-19} |
- spaln | 0 | {covid-19,bio} |
srf | 0 | {bio-dev} |
- tophat-recondition | 0 | {bio,covid-19} |
- trace2dbest | 0 | {bio} |
- varscan | 0 | {covid-19,bio} |
xdffileio | 0 | {imaging-dev} |
+ xxsds-dynamic | 0 | {bio-dev} |
mssstest | -1 | {tools} |
sight | -1 | {imaging-dev} |
tipp | -1 | {covid-19,bio} |
-(235 rows)
+(236 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/bccf7ad124b7319e152a1e656c0ac8e553e6f861
--
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