[med-svn] [Git][med-team/smalt][master] 4 commits: d/control: Annotate python3 with <!nocheck>

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / smalt


Commits:
88a3ba6a by Nilesh Patra at 2021-12-16T20:09:47+05:30
d/control: Annotate python3 with <!nocheck>

- - - - -
0e8d5c5e by Nilesh Patra at 2021-12-16T20:10:43+05:30
d/p/add-runstatedir.patch: Add --runstatedir to configure script

- - - - -
0f0f8d83 by Nilesh Patra at 2021-12-16T20:11:04+05:30
d/rules: Use dh_auto_configure instead of home-grown command

- - - - -
a41b94e9 by Nilesh Patra at 2021-12-16T20:13:17+05:30
Upload to unstable

- - - - -


5 changed files:

- debian/changelog
- debian/control
- + debian/patches/add-runstatedir.patch
- debian/patches/series
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+smalt (0.7.6-12) unstable; urgency=medium
+
+  * Team Upload.
+  * Make build cross buildable
+    - d/control: Annotate python3 with <!nocheck>
+    - d/p/add-runstatedir.patch: Add --runstatedir to configure script
+    - d/rules: Use dh_auto_configure instead of home-grown command
+
+ -- Nilesh Patra <nilesh at debian.org>  Thu, 16 Dec 2021 20:11:13 +0530
+
 smalt (0.7.6-11) unstable; urgency=medium
 
   * Create target sequenceReverseComplement_test in dh_auto_build override


=====================================
debian/control
=====================================
@@ -5,7 +5,7 @@ Section: science
 Priority: optional
 Build-Depends: debhelper-compat (= 13),
                zlib1g-dev,
-               python3,
+               python3 <!nocheck>,
                samtools,
                libbambamc-dev
 Standards-Version: 4.6.0


=====================================
debian/patches/add-runstatedir.patch
=====================================
@@ -0,0 +1,54 @@
+Description: Add --runstatedir option to configure so as to run with dh_auto_configure
+Author: Nilesh Patra <nilesh at debian.org>
+Last-Update: 2021-12-16
+--- a/configure
++++ b/configure
+@@ -722,6 +722,7 @@
+ oldincludedir
+ includedir
+ localstatedir
++runstatedir
+ sharedstatedir
+ sysconfdir
+ datadir
+@@ -800,6 +801,7 @@
+ sysconfdir='${prefix}/etc'
+ sharedstatedir='${prefix}/com'
+ localstatedir='${prefix}/var'
++runstatedir='${localstatedir}/run'
+ includedir='${prefix}/include'
+ oldincludedir='/usr/include'
+ docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
+@@ -976,6 +978,15 @@
+   | --localstate=* | --localstat=* | --localsta=* | --localst=* | --locals=*)
+     localstatedir=$ac_optarg ;;
+ 
++  -runstatedir | --runstatedir | --runstatedi | --runstated \
++  | --runstate | --runstat | --runsta | --runst \
++  | --runs | --run | --ru)
++    ac_prev=runstatedir ;;
++  -runstatedir=* | --runstatedir=* | --runstatedi=* | --runstated=* \
++  | --runstate=* | --runstat=* | --runsta=* | --runst=* \
++  | --runs=* | --run=* | --ru=*)
++    runstatedir=$ac_optarg ;;
++
+   -mandir | --mandir | --mandi | --mand | --man | --ma | --m)
+     ac_prev=mandir ;;
+   -mandir=* | --mandir=* | --mandi=* | --mand=* | --man=* | --ma=* | --m=*)
+@@ -1187,7 +1198,7 @@
+ 
+ # Check all directory arguments for consistency.
+ for ac_var in	exec_prefix prefix bindir sbindir libexecdir datarootdir \
+-		datadir sysconfdir sharedstatedir localstatedir includedir \
++		datadir sysconfdir sharedstatedir localstatedir runstatedir includedir \
+ 		oldincludedir docdir infodir htmldir dvidir pdfdir psdir \
+ 		libdir localedir mandir
+ do
+@@ -1344,6 +1355,7 @@
+   --sysconfdir=DIR        read-only single-machine data [PREFIX/etc]
+   --sharedstatedir=DIR    modifiable architecture-independent data [PREFIX/com]
+   --localstatedir=DIR     modifiable single-machine data [PREFIX/var]
++  --runstatedir=DIR       extra definition of runtime data [LOCALSTATEDIR/run]
+   --libdir=DIR            object code libraries [EPREFIX/lib]
+   --includedir=DIR        C header files [PREFIX/include]
+   --oldincludedir=DIR     C header files for non-gcc [/usr/include]


=====================================
debian/patches/series
=====================================
@@ -1,3 +1,4 @@
 #bam_cigar_test_makefile.patch
 #try_to_fix_automake.patch
 2to3.patch
+add-runstatedir.patch


=====================================
debian/rules
=====================================
@@ -11,8 +11,7 @@ override_dh_autoreconf:
 	echo "Do nothing - fails because auf broken upstream autoconf stuff"
 
 override_dh_auto_configure:
-	# see upstream INSTALL file
-	CONFIG_SHELL=/bin/bash /bin/bash ./configure CONFIG_SHELL=/bin/bash
+	dh_auto_configure -- CONFIG_SHELL=/bin/bash
 
 override_dh_auto_install:
 	# upstream install does install more files than needed



View it on GitLab: https://salsa.debian.org/med-team/smalt/-/compare/0c378210b5ddf31c2b34d102060fb4782cfd839a...a41b94e90586efc5ba4deeb87f446d707e6b293d

-- 
View it on GitLab: https://salsa.debian.org/med-team/smalt/-/compare/0c378210b5ddf31c2b34d102060fb4782cfd839a...a41b94e90586efc5ba4deeb87f446d707e6b293d
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