[med-svn] [Git][med-team/python-pbcore][master] Get docs building

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / python-pbcore


Commits:
360edd89 by Nilesh Patra at 2021-12-23T21:09:29+05:30
Get docs building

- - - - -


3 changed files:

- + debian/patches/seek-curdir-for-xml.patch
- debian/patches/series
- debian/rules


Changes:

=====================================
debian/patches/seek-curdir-for-xml.patch
=====================================
@@ -0,0 +1,20 @@
+Description: Try looking for mapping.xml in the current directory 
+ helps when package is not installed for generating docs etc
+Origin: Nilesh Patra <nilesh at debian.org>
+Last-Update: 2021-12-23
+--- a/pbcore/chemistry/chemistry.py
++++ b/pbcore/chemistry/chemistry.py
+@@ -34,8 +34,12 @@
+ 
+ 
+ def _loadBarcodeMappings():
+-    mappingFname = resource_filename(Requirement.parse(
++    try:
++        mappingFname = resource_filename(Requirement.parse(
+         'pbcore'), 'pbcore/chemistry/resources/mapping.xml')
++    except:
++        mappingFname = os.path.join(os.path.dirname(__file__),
++        'resources/mapping.xml')
+     mappings = _loadBarcodeMappingsFromFile(mappingFname)
+     updMappingDir = os.getenv("SMRT_CHEMISTRY_BUNDLE_DIR")
+     if updMappingDir:


=====================================
debian/patches/series
=====================================
@@ -2,3 +2,4 @@ doc-theme.patch
 enable-build-time-testing.patch
 exclude_test_missing_data.patch
 b24746790c7105212e45dc2f40115d231bd8baae.patch
+seek-curdir-for-xml.patch


=====================================
debian/rules
=====================================
@@ -6,7 +6,6 @@ include /usr/share/dpkg/default.mk
 export PYBUILD_NAME = pbcore
 export PYBUILD_AFTER_INSTALL = \
   chmod -x {destdir}/{install_dir}/pbcore/data/datasets/*.xml
-
 DESTDIR = $(CURDIR)/debian/python3-$(PYBUILD_NAME)
 export LC_ALL=C.UTF-8
 %:
@@ -14,7 +13,7 @@ export LC_ALL=C.UTF-8
 
 override_dh_auto_build:
 	dh_auto_build
-	PYTHONPATH=$(shell pybuild --print build_dir --interpreter python3) $(MAKE) doc || true
+	PYTHONPATH=$(shell pybuild --print build_dir --interpreter python3) $(MAKE) doc
 
 override_dh_install:
 	dh_install



View it on GitLab: https://salsa.debian.org/med-team/python-pbcore/-/commit/360edd89fea786865b2f88c8bd3d1c73943179d0

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-pbcore/-/commit/360edd89fea786865b2f88c8bd3d1c73943179d0
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