Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
558daeaf by Andreas Tille at 2021-12-31T01:42:33+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,143 +1,139 @@
-Last-Update: Sun, 19 Dec 2021 13:42:04 +0000
+Last-Update: Fri, 31 Dec 2021 01:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 172 | {imaging,covid-19} |
- orthanc | 99 | {covid-19,practice,imaging} |
+ dcmtk | 171 | {imaging,covid-19} |
+ orthanc | 101 | {covid-19,practice,imaging} |
orthanc-wsi | 51 | {covid-19,oncology,his,laboratory,practice,imaging} |
- htsjdk | 31 | {bio-dev} |
- amide | 29 | {imaging} |
- dicom3tools | 27 | {imaging} |
- dcm2niix | 26 | {imaging} |
- dicomscope | 26 | {imaging} |
- gdcm | 19 | {imaging-dev} |
- gdcm | 16 | {imaging,covid-19} |
- invesalius | 16 | {imaging} |
- gnumed-server | 14 | {covid-19,practice} |
+ htsjdk | 30 | {bio-dev} |
+ amide | 24 | {imaging} |
+ dicom3tools | 24 | {imaging} |
+ dcm2niix | 22 | {imaging} |
+ dicomscope | 21 | {imaging} |
+ gnumed-server | 15 | {covid-19,practice} |
+ ngs-sdk | 15 | {bio-dev} |
+ gdcm | 14 | {imaging,covid-19} |
minc-tools | 14 | {imaging} |
- ngs-sdk | 14 | {bio-dev} |
- mrtrix3 | 13 | {imaging} |
- openslide | 13 | {imaging} |
- adun.app | 12 | {bio} |
- gdcm | 12 | {imaging-dev} |
- insighttoolkit4 | 12 | {imaging-dev} |
- orthanc-webviewer | 12 | {imaging} |
+ orthanc-webviewer | 14 | {imaging} |
+ adun.app | 13 | {bio} |
+ invesalius | 12 | {imaging} |
pixelmed | 12 | {imaging} |
- plastimatch | 11 | {imaging} |
+ insighttoolkit4 | 11 | {imaging-dev} |
+ openslide | 11 | {imaging} |
dicomnifti | 10 | {imaging} |
- jebl2 | 9 | {bio-dev} |
- mia | 9 | {imaging} |
- king | 8 | {typesetting,imaging} |
+ gdcm | 8 | {imaging-dev} |
+ jebl2 | 8 | {bio-dev} |
nifticlib | 8 | {imaging} |
- biojava-live | 7 | {bio-dev} |
- lagan | 7 | {bio} |
+ king | 7 | {typesetting,imaging} |
+ libminc | 7 | {imaging-dev} |
+ mia | 7 | {imaging} |
+ mrtrix3 | 7 | {imaging} |
ngs-sdk | 7 | {bio-dev} |
- nifti2dicom | 6 | {imaging} |
+ plastimatch | 7 | {imaging} |
+ biojava-live | 6 | {bio-dev} |
nifticlib | 6 | {imaging-dev} |
- treeview | 6 | {bio,bio-phylogeny} |
- dicompyler | 5 | {oncology} |
- libminc | 5 | {imaging-dev} |
- libncl | 5 | {bio} |
+ openslide | 6 | {imaging-dev} |
+ lagan | 5 | {bio} |
librg-utils-perl | 5 | {bio} |
- ngs-sdk | 5 | {bio-dev} |
nifti2dicom | 5 | {imaging} |
- openslide | 5 | {imaging-dev} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
oscar | 5 | {data,tools,practice} |
- rambo-k | 5 | {bio} |
salmon | 5 | {bio,covid-19} |
beast-mcmc | 4 | {bio,bio-phylogeny} |
- elastix | 4 | {imaging} |
- orthanc-mysql | 4 | {imaging} |
- runcircos-gui | 4 | {bio} |
- stacks | 4 | {bio} |
- tracetuner | 4 | {bio} |
+ libdivsufsort | 4 | {bio-dev} |
+ nifti2dicom | 4 | {imaging} |
+ nipype | 4 | {imaging,imaging-dev} |
+ orthanc-postgresql | 4 | {imaging} |
bart-view | 3 | {imaging} |
bio-tradis | 3 | {bio,bio-dev} |
bitseq | 3 | {bio} |
brig | 3 | {bio} |
- canu | 3 | {bio} |
+ dicompyler | 3 | {oncology} |
embassy-domainatrix | 3 | {cloud,bio} |
embassy-domalign | 3 | {cloud,bio} |
- embassy-domsearch | 3 | {cloud,bio} |
- gatb-core | 3 | {bio} |
- getdata | 3 | {bio} |
- ghmm | 3 | {bio} |
- jellyfish1 | 3 | {bio} |
- lamarc | 3 | {bio} |
- libdivsufsort | 3 | {bio-dev} |
- librdp-taxonomy-tree-java | 3 | {bio-dev} |
- libsbml | 3 | {bio-dev} |
- melting | 3 | {cloud,bio} |
- mhap | 3 | {bio,bio-ngs} |
- nipype | 3 | {imaging,imaging-dev} |
+ libncl | 3 | {bio} |
obitools | 3 | {bio} |
- orthanc-postgresql | 3 | {imaging} |
- phyutility | 3 | {cloud,bio} |
- piler | 3 | {bio} |
+ orthanc-python | 3 | {covid-19} |
pymia | 3 | {imaging-dev} |
- rdp-classifier | 3 | {bio} |
- saint | 3 | {bio} |
- sibsim4 | 3 | {bio,cloud} |
- spread-phy | 3 | {bio,bio-phylogeny} |
+ rambo-k | 3 | {bio} |
+ tracetuner | 3 | {bio} |
+ treeview | 3 | {bio,bio-phylogeny} |
anfo | 2 | {bio,cloud} |
arden | 2 | {bio,cloud} |
assemblytics | 2 | {bio} |
biomaj3-cli | 2 | {cloud} |
blimps | 2 | {bio} |
+ canu | 2 | {bio} |
cat-bat | 2 | {bio,covid-19} |
- clonalframeml | 2 | {bio,covid-19} |
clonalorigin | 2 | {bio} |
- cmtk | 2 | {imaging} |
- delly | 2 | {covid-19,bio} |
+ elastix | 2 | {imaging} |
+ embassy-domsearch | 2 | {cloud,bio} |
fastml | 2 | {bio} |
- fsm-lite | 2 | {bio} |
- hinge | 2 | {bio} |
- ipig | 2 | {bio} |
- jmodeltest | 2 | {bio-phylogeny,bio} |
- libpal-java | 2 | {bio-dev} |
- libvistaio | 2 | {imaging-dev} |
- mauve-aligner | 2 | {bio} |
- microbegps | 2 | {bio} |
+ gatb-core | 2 | {bio} |
+ jellyfish1 | 2 | {bio} |
+ librdp-taxonomy-tree-java | 2 | {bio-dev} |
+ melting | 2 | {cloud,bio} |
+ mhap | 2 | {bio,bio-ngs} |
orthanc-gdcm | 2 | {imaging} |
- orthanc-python | 2 | {covid-19} |
+ orthanc-mysql | 2 | {imaging} |
papyrus | 2 | {imaging-dev} |
pigx-rnaseq | 2 | {bio,covid-19} |
- placnet | 2 | {bio} |
- plasmidid | 2 | {covid-19,bio} |
- plasmidseeker | 2 | {bio} |
- proalign | 2 | {bio,bio-phylogeny} |
+ piler | 2 | {bio} |
pscan-chip | 2 | {bio} |
- qcumber | 2 | {bio} |
- rdp-alignment | 2 | {bio} |
- rtax | 2 | {cloud,bio} |
- sga | 2 | {bio} |
+ rdp-classifier | 2 | {bio} |
+ runcircos-gui | 2 | {bio} |
+ sibsim4 | 2 | {bio,cloud} |
sift | 2 | {bio} |
- soapaligner | 2 | {bio} |
- soapsnp | 2 | {bio} |
- sprai | 2 | {bio} |
- staden | 2 | {bio} |
- suitename | 2 | {bio} |
- surankco | 2 | {bio} |
+ spread-phy | 2 | {bio,bio-phylogeny} |
+ stacks | 2 | {bio} |
tvc | 2 | {bio} |
varna | 2 | {bio} |
zalign | 2 | {cloud,bio} |
atropos | 1 | {bio} |
+ clonalframeml | 1 | {bio,covid-19} |
+ cmtk | 1 | {imaging} |
+ ctn | 1 | {imaging-dev} |
cufflinks | 1 | {bio,cloud} |
- cutesv | 1 | {bio} |
+ delly | 1 | {covid-19,bio} |
dextractor | 1 | {bio,covid-19} |
emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
+ getdata | 1 | {bio} |
+ ghmm | 1 | {bio} |
+ hinge | 1 | {bio} |
+ ipig | 1 | {bio} |
+ jmodeltest | 1 | {bio-phylogeny,bio} |
kmerresistance | 1 | {bio} |
+ lamarc | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
+ libctapimkt | 1 | {practice} |
libncl | 1 | {bio-dev} |
- metaphlan2 | 1 | {bio} |
- opencfu | 1 | {laboratory} |
+ libpal-java | 1 | {bio-dev} |
+ libsbml | 1 | {bio-dev} |
+ libvistaio | 1 | {imaging-dev} |
+ mauve-aligner | 1 | {bio} |
+ microbegps | 1 | {bio} |
+ phyutility | 1 | {cloud,bio} |
pique | 1 | {bio} |
+ placnet | 1 | {bio} |
+ plasmidid | 1 | {covid-19,bio} |
+ plasmidseeker | 1 | {bio} |
pplacer | 1 | {covid-19,bio,bio-phylogeny} |
+ proalign | 1 | {bio,bio-phylogeny} |
+ qcumber | 1 | {bio} |
+ rdp-alignment | 1 | {bio} |
+ rtax | 1 | {cloud,bio} |
+ saint | 1 | {bio} |
+ sga | 1 | {bio} |
shovill | 1 | {covid-19,bio} |
skesa | 1 | {bio} |
+ soapaligner | 1 | {bio} |
+ soapsnp | 1 | {bio} |
spaln | 1 | {covid-19,bio} |
+ sprai | 1 | {bio} |
+ staden | 1 | {bio} |
+ suitename | 1 | {bio} |
+ surankco | 1 | {bio} |
thesias | 1 | {bio,covid-19} |
tophat-recondition | 1 | {bio,covid-19} |
trace2dbest | 1 | {bio} |
@@ -148,7 +144,7 @@ Last-Update: Sun, 19 Dec 2021 13:42:04 +0000
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
- ctn | 0 | {imaging-dev} |
+ cutesv | 0 | {bio} |
eegdev | 0 | {imaging-dev} |
emperor | 0 | {bio} |
fis-gtm | 0 | {his} |
@@ -166,7 +162,6 @@ Last-Update: Sun, 19 Dec 2021 13:42:04 +0000
libbpp-seq | 0 | {bio-dev} |
libbpp-seq-omics | 0 | {bio-dev} |
libchado-perl | 0 | {bio-dev} |
- libctapimkt | 0 | {practice} |
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
@@ -181,6 +176,7 @@ Last-Update: Sun, 19 Dec 2021 13:42:04 +0000
libseqlib | 0 | {bio-dev} |
libstatgen | 0 | {bio-dev} |
libxdf | 0 | {imaging-dev} |
+ metaphlan2 | 0 | {bio} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
@@ -188,13 +184,14 @@ Last-Update: Sun, 19 Dec 2021 13:42:04 +0000
milib | 0 | {bio-dev,covid-19} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
+ opencfu | 0 | {laboratory} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
python-wdlparse | 0 | {bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
@@ -208,5 +205,5 @@ Last-Update: Sun, 19 Dec 2021 13:42:04 +0000
mssstest | -1 | {tools} |
sight | -1 | {imaging-dev} |
tipp | -1 | {covid-19,bio} |
-(236 rows)
+(233 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/558daeaf6eb6b7a0311b1bd95ed844bdcb52cd01
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/558daeaf6eb6b7a0311b1bd95ed844bdcb52cd01
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