Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
671ec843 by Andreas Tille at 2021-02-02T13:42:19+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,150 +1,160 @@
-Last-Update: Tue, 02 Feb 2021 01:42:03 +0000
+Last-Update: Tue, 02 Feb 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 176 | {imaging,covid-19} |
+ dcmtk | 175 | {imaging,covid-19} |
orthanc | 96 | {practice,imaging,covid-19} |
orthanc-wsi | 53 | {laboratory,practice,his,oncology,covid-19,imaging} |
- gdcm | 35 | {imaging-dev} |
- dicom3tools | 31 | {imaging} |
- amide | 29 | {imaging} |
- htsjdk | 24 | {bio-dev} |
- dicomscope | 23 | {imaging} |
+ gdcm | 34 | {imaging-dev} |
+ dicom3tools | 32 | {imaging} |
+ amide | 30 | {imaging} |
+ htsjdk | 25 | {bio-dev} |
+ dicomscope | 22 | {imaging} |
+ gdcm | 22 | {imaging,covid-19} |
dcm2niix | 21 | {imaging} |
- gdcm | 20 | {imaging,covid-19} |
- odin | 18 | {imaging,imaging-dev} |
- nifticlib | 17 | {imaging} |
+ odin | 19 | {imaging,imaging-dev} |
+ nifticlib | 18 | {imaging} |
+ plastimatch | 16 | {imaging} |
gnumed-server | 15 | {covid-19,practice} |
- plastimatch | 14 | {imaging} |
- dicomnifti | 13 | {imaging} |
- gdcm | 13 | {imaging-dev} |
- minc-tools | 13 | {imaging} |
+ dicomnifti | 14 | {imaging} |
+ minc-tools | 14 | {imaging} |
+ gdcm | 12 | {imaging-dev} |
pixelmed | 12 | {imaging} |
insighttoolkit4 | 11 | {imaging-dev} |
- king | 10 | {imaging,typesetting} |
- ngs-sdk | 10 | {bio-dev} |
+ king | 11 | {imaging,typesetting} |
+ ngs-sdk | 11 | {bio-dev} |
+ openslide | 10 | {imaging} |
adun.app | 9 | {bio} |
- invesalius | 9 | {imaging} |
- openslide | 9 | {imaging} |
+ jebl2 | 9 | {bio-dev} |
+ biojava-live | 8 | {bio-dev} |
ea-utils | 8 | {bio} |
- jebl2 | 8 | {bio-dev} |
+ invesalius | 8 | {imaging} |
mia | 8 | {imaging} |
+ mipe | 8 | {bio,cloud} |
multiqc | 8 | {covid-19,bio} |
+ nifti2dicom | 8 | {imaging} |
+ prime-phylo | 8 | {bio,cloud} |
vtk-dicom | 8 | {imaging} |
- biojava-live | 7 | {bio-dev} |
+ bamkit | 7 | {covid-19,bio} |
+ biomaj3-cli | 7 | {cloud} |
+ bio-tradis | 7 | {bio,bio-dev} |
+ fastlink | 7 | {bio,cloud} |
ghmm | 7 | {bio} |
+ jellyfish1 | 7 | {bio} |
+ lagan | 7 | {bio} |
+ libncl | 7 | {bio} |
librg-utils-perl | 7 | {bio} |
- mipe | 7 | {bio,cloud} |
+ mauve-aligner | 7 | {bio} |
ngs-sdk | 7 | {bio-dev} |
- nifti2dicom | 7 | {imaging} |
obitools | 7 | {bio} |
orthanc-webviewer | 7 | {imaging} |
- prime-phylo | 7 | {bio,cloud} |
- bamkit | 6 | {covid-19,bio} |
- biomaj3-cli | 6 | {cloud} |
- bio-tradis | 6 | {bio,bio-dev} |
- fastlink | 6 | {bio,cloud} |
- jellyfish1 | 6 | {bio} |
- lagan | 6 | {bio} |
+ runcircos-gui | 7 | {bio} |
+ tracetuner | 7 | {bio} |
+ beast-mcmc | 6 | {bio-phylogeny,bio} |
+ bitseq | 6 | {bio} |
+ ecopcr | 6 | {bio} |
+ embassy-domainatrix | 6 | {bio,cloud} |
+ embassy-domsearch | 6 | {cloud,bio} |
+ estscan | 6 | {bio} |
+ lamarc | 6 | {bio} |
libminc | 6 | {imaging-dev} |
- libncl | 6 | {bio} |
- mauve-aligner | 6 | {bio} |
+ melting | 6 | {bio,cloud} |
+ perm | 6 | {cloud,bio} |
+ phast | 6 | {bio} |
pymia | 6 | {imaging-dev} |
rambo-k | 6 | {bio} |
- runcircos-gui | 6 | {bio} |
+ saint | 6 | {bio} |
seqsero | 6 | {bio} |
- tracetuner | 6 | {bio} |
- beast-mcmc | 5 | {bio-phylogeny,bio} |
- bitseq | 5 | {bio} |
- ecopcr | 5 | {bio} |
- embassy-domainatrix | 5 | {bio,cloud} |
- embassy-domsearch | 5 | {cloud,bio} |
- estscan | 5 | {bio} |
- lamarc | 5 | {bio} |
+ spread-phy | 6 | {bio,bio-phylogeny} |
+ staden | 6 | {bio} |
+ treeview | 6 | {bio-phylogeny,bio} |
+ bart-view | 5 | {imaging} |
+ brig | 5 | {bio} |
+ busco | 5 | {covid-19,bio} |
+ clonalorigin | 5 | {bio} |
+ cufflinks | 5 | {cloud,bio} |
+ libpal-java | 5 | {bio-dev} |
+ librdp-taxonomy-tree-java | 5 | {bio-dev} |
libsbml | 5 | {bio-dev} |
- melting | 5 | {bio,cloud} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
- perm | 5 | {cloud,bio} |
- phast | 5 | {bio} |
- saint | 5 | {bio} |
- spread-phy | 5 | {bio,bio-phylogeny} |
- staden | 5 | {bio} |
- treeview | 5 | {bio-phylogeny,bio} |
- bart-view | 4 | {imaging} |
- brig | 4 | {bio} |
- busco | 4 | {covid-19,bio} |
- clonalorigin | 4 | {bio} |
- cufflinks | 4 | {cloud,bio} |
+ piler | 5 | {bio} |
+ prottest | 5 | {bio,bio-phylogeny} |
+ pscan-chip | 5 | {bio} |
+ qcumber | 5 | {bio} |
+ quorum | 5 | {bio} |
+ rdp-alignment | 5 | {bio} |
+ rdp-classifier | 5 | {bio} |
+ anfo | 4 | {cloud,bio} |
+ arden | 4 | {bio,cloud} |
+ assemblytics | 4 | {bio} |
+ canu | 4 | {bio} |
+ dicompyler | 4 | {oncology} |
elastix | 4 | {imaging} |
+ embassy-domalign | 4 | {cloud,bio} |
+ fastml | 4 | {bio} |
+ jmodeltest | 4 | {bio,bio-phylogeny} |
libdivsufsort | 4 | {bio-dev} |
- libpal-java | 4 | {bio-dev} |
- librdp-taxonomy-tree-java | 4 | {bio-dev} |
+ mhap | 4 | {bio,bio-ngs} |
+ microbegps | 4 | {bio} |
+ ngs-sdk | 4 | {bio-dev} |
nifticlib | 4 | {imaging-dev} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
+ paraclu | 4 | {bio,cloud} |
pbdagcon | 4 | {bio} |
- piler | 4 | {bio} |
- prottest | 4 | {bio,bio-phylogeny} |
- pscan-chip | 4 | {bio} |
- qcumber | 4 | {bio} |
- quorum | 4 | {bio} |
- rdp-alignment | 4 | {bio} |
- rdp-classifier | 4 | {bio} |
+ phyutility | 4 | {bio,cloud} |
+ proalign | 4 | {bio,bio-phylogeny} |
+ rtax | 4 | {bio,cloud} |
salmid | 4 | {bio} |
- anfo | 3 | {cloud,bio} |
- arden | 3 | {bio,cloud} |
- assemblytics | 3 | {bio} |
+ salmon | 4 | {covid-19,bio} |
+ sibsim4 | 4 | {cloud,bio} |
+ soapsnp | 4 | {bio} |
+ stacks | 4 | {bio} |
+ suitename | 4 | {bio} |
+ surankco | 4 | {bio} |
+ tvc | 4 | {bio} |
+ yaha | 4 | {bio} |
+ blasr | 3 | {bio,bio-ngs} |
blimps | 3 | {bio} |
- canu | 3 | {bio} |
- dicompyler | 3 | {oncology} |
- embassy-domalign | 3 | {cloud,bio} |
- fastml | 3 | {bio} |
+ cat-bat | 3 | {covid-19,bio} |
+ clonalframeml | 3 | {bio,covid-19} |
+ delly | 3 | {bio,covid-19} |
+ fsm-lite | 3 | {bio} |
getdata | 3 | {bio} |
- jmodeltest | 3 | {bio,bio-phylogeny} |
- mhap | 3 | {bio,bio-ngs} |
- microbegps | 3 | {bio} |
- ngs-sdk | 3 | {bio-dev} |
- paraclu | 3 | {bio,cloud} |
- phyutility | 3 | {bio,cloud} |
- proalign | 3 | {bio,bio-phylogeny} |
- rtax | 3 | {bio,cloud} |
- salmon | 3 | {covid-19,bio} |
- sibsim4 | 3 | {cloud,bio} |
+ hinge | 3 | {bio} |
+ ipig | 3 | {bio} |
+ logol | 3 | {bio} |
+ placnet | 3 | {bio} |
+ plasmidseeker | 3 | {bio} |
+ samblaster | 3 | {covid-19,bio} |
+ sga | 3 | {bio} |
sift | 3 | {bio} |
- soapsnp | 3 | {bio} |
- stacks | 3 | {bio} |
- suitename | 3 | {bio} |
- surankco | 3 | {bio} |
- tvc | 3 | {bio} |
- yaha | 3 | {bio} |
- blasr | 2 | {bio,bio-ngs} |
- cat-bat | 2 | {covid-19,bio} |
- clonalframeml | 2 | {bio,covid-19} |
- delly | 2 | {bio,covid-19} |
- fsm-lite | 2 | {bio} |
- hinge | 2 | {bio} |
- ipig | 2 | {bio} |
+ sight | 3 | {imaging} |
+ soapaligner | 3 | {bio} |
+ spaced | 3 | {bio} |
+ sprai | 3 | {bio} |
+ zalign | 3 | {cloud,bio} |
+ atropos | 2 | {bio} |
+ dextractor | 2 | {bio,covid-19} |
+ emmax | 2 | {bio} |
+ gatb-core | 2 | {bio} |
libmuscle | 2 | {bio-dev} |
- logol | 2 | {bio} |
metaphlan2 | 2 | {bio} |
oscar | 2 | {data,tools,practice} |
- placnet | 2 | {bio} |
- plasmidseeker | 2 | {bio} |
- samblaster | 2 | {covid-19,bio} |
- sga | 2 | {bio} |
- sight | 2 | {imaging} |
- soapaligner | 2 | {bio} |
- spaced | 2 | {bio} |
- sprai | 2 | {bio} |
+ python-bcbio-gff | 2 | {bio-dev} |
+ segemehl | 2 | {bio} |
+ spaln | 2 | {bio,covid-19} |
srf | 2 | {bio-dev} |
- zalign | 2 | {cloud,bio} |
- atropos | 1 | {bio} |
+ tophat-recondition | 2 | {covid-19,bio} |
+ trace2dbest | 2 | {bio} |
+ varscan | 2 | {covid-19,bio} |
+ yanagiba | 2 | {covid-19,bio} |
bambamc | 1 | {bio-dev} |
- dextractor | 1 | {bio,covid-19} |
- emmax | 1 | {bio} |
- gatb-core | 1 | {bio} |
+ bbmap | 1 | {covid-19,bio} |
+ bustools | 1 | {bio,covid-19} |
gatb-core | 1 | {bio-dev} |
gifticlib | 1 | {imaging-dev} |
+ kmerresistance | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libbpp-core | 1 | {bio-dev} |
libbpp-phyl | 1 | {bio-dev} |
@@ -170,21 +180,20 @@ Last-Update: Tue, 02 Feb 2021 01:42:03 +0000
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
pbseqlib | 1 | {bio-dev} |
- python-bcbio-gff | 1 | {bio-dev} |
- segemehl | 1 | {bio} |
+ pigx-rnaseq | 1 | {bio,covid-19} |
+ pilercr | 1 | {bio} |
+ pique | 1 | {bio} |
+ pplacer | 1 | {covid-19,bio,bio-phylogeny} |
+ sambamba | 1 | {bio} |
seq-gen | 1 | {bio} |
- spaln | 1 | {bio,covid-19} |
+ skesa | 1 | {bio} |
+ skewer | 1 | {bio} |
svim | 1 | {bio} |
- tophat-recondition | 1 | {covid-19,bio} |
- trace2dbest | 1 | {bio} |
- varscan | 1 | {covid-19,bio} |
- yanagiba | 1 | {covid-19,bio} |
+ thesias | 1 | {bio,covid-19} |
acedb | 0 | {cloud,bio} |
- bbmap | 0 | {covid-19,bio} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
- bustools | 0 | {bio,covid-19} |
camp | 0 | {imaging-dev} |
ctn | 0 | {imaging-dev} |
eegdev | 0 | {imaging-dev} |
@@ -192,7 +201,6 @@ Last-Update: Tue, 02 Feb 2021 01:42:03 +0000
fis-gtm | 0 | {his} |
htscodecs | 0 | {covid-19,bio-dev} |
intake | 0 | {bio-dev,bio} |
- kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
@@ -215,25 +223,17 @@ Last-Update: Tue, 02 Feb 2021 01:42:03 +0000
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- pigx-rnaseq | 0 | {bio,covid-19} |
- pilercr | 0 | {bio} |
- pique | 0 | {bio} |
plasmidid | 0 | {bio,covid-19} |
- pplacer | 0 | {covid-19,bio,bio-phylogeny} |
python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {bio-dev,covid-19} |
q2-sample-classifier | 0 | {bio,bio-dev} |
resfinder-db | 0 | {bio} |
- sambamba | 0 | {bio} |
samtools-legacy | 0 | {bio-dev} |
sbmltoolbox | 0 | {bio-dev} |
shovill | 0 | {covid-19,bio} |
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
- skesa | 0 | {bio} |
- skewer | 0 | {bio} |
smrtanalysis | 0 | {covid-19,bio} |
- thesias | 0 | {bio,covid-19} |
varna | 0 | {bio} |
vienna-rna | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/671ec843dce2b1e90cf635cac2759523b8a8c462
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/671ec843dce2b1e90cf635cac2759523b8a8c462
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20210202/0f72c564/attachment-0001.html>