[med-svn] [Git][med-team/ncbi-entrez-direct][master] 39 commits: New upstream version 14.0.20201116+dfsg
Aaron M. Ucko
gitlab at salsa.debian.org
Sun Feb 7 03:12:30 GMT 2021
Aaron M. Ucko pushed to branch master at Debian Med / ncbi-entrez-direct
Commits:
e6110438 by Aaron M. Ucko at 2021-01-24T17:21:29-05:00
New upstream version 14.0.20201116+dfsg
- - - - -
fbbab800 by Aaron M. Ucko at 2021-01-24T17:24:00-05:00
New upstream version 14.1.20201130+dfsg
- - - - -
c216b3e5 by Aaron M. Ucko at 2021-01-24T18:19:00-05:00
New upstream version 14.1.20201211+dfsg
- - - - -
db268ca0 by Aaron M. Ucko at 2021-01-24T18:22:22-05:00
Merge tag 'upstream/14.0.20201116+dfsg'
Upstream version 14.0.20201116(+dfsg).
- - - - -
33807905 by Aaron M. Ucko at 2021-01-24T18:22:22-05:00
debian/man/{nquire,transmute}.1: More belated corrections.
- nquire.1: Correct paste-o in description of Perl implementation.
- transmute.1: Fully document new -format suboptions -xml, -doctype,
-comment, and -cdata, half of which turn out to take arguments.
Mention only the latter in debian/changelog, since nquire now no
longer supports forwarding to the Perl implementation at all.
- - - - -
f9b2d6ed by Aaron M. Ucko at 2021-01-24T18:22:22-05:00
Merge tag 'upstream/14.1.20201130+dfsg'
Upstream version 14.1.20201130(+dfsg).
- - - - -
e73e52a4 by Aaron M. Ucko at 2021-01-24T20:14:44-05:00
New upstream version 14.2.20201214+dfsg
- - - - -
eb87c85a by Aaron M. Ucko at 2021-01-24T20:36:26-05:00
New upstream version 14.2.20201230+dfsg
- - - - -
cef7edac by Aaron M. Ucko at 2021-01-24T20:54:23-05:00
debian/man/*.1: Update for new release (14.1.20201130[+dfsg]).
* edirect.1: Note that -nquir no longer has a wrapper script.
* nquire.1: Drop references to the legacy Perl implementation, no
longer invoked.
* transmute.1: Document new -fmt suboptions -separate and -self.
* xtract.1: Document new options -set, -rec, -enc, and -pkg (all XML
Generation) and --STATS (Element Selection); tweak descriptions of
-plg, -elg, -fwd, and -awd (all XML Generation) per -help.
- - - - -
a287db0b by Aaron M. Ucko at 2021-01-24T20:54:24-05:00
Merge tag 'upstream/14.1.20201211+dfsg'
Upstream version 14.1.20201211(+dfsg).
- - - - -
8542c452 by Aaron M. Ucko at 2021-01-24T20:54:24-05:00
debian/man/*.1: Update for new release (14.1.20201211[+dfsg]).
* transmute.1: Add -header (for -t2x and -c2x); rename -{en,de}codeB64
to -{en,code}64.
* xtract.1: Drop -decode (which didn't match -encode); move -order
from String Processing to Text Processing per upstream -help.
- - - - -
12887ce7 by Aaron M. Ucko at 2021-01-24T20:54:24-05:00
Merge tag 'upstream/14.2.20201214+dfsg'
Upstream version 14.2.20201214(+dfsg).
- - - - -
cfd85003 by Aaron M. Ucko at 2021-01-24T20:54:24-05:00
transmute.1: Update for new release (14.2.20201214[+dfsg]).
Document new -align mode (Pretty-Printing).
- - - - -
15c58067 by Aaron M. Ucko at 2021-01-24T20:54:24-05:00
Merge tag 'upstream/14.2.20201230+dfsg'
Upstream version 14.2.20201230(+dfsg).
- - - - -
fb7b55cb by Aaron M. Ucko at 2021-01-24T21:14:11-05:00
debian/man/*.1: Update for new release (14.2.20201230[+dfsg]).
* align-columns.1: New alias for transmute.1.
* efetch.1: Add Accession Mapping (-examples).
* transmute.1: Note align-columns partial alias and numeric -align
codes n and N; reorder flags per -help.
* xtract.1: Add -doi (String Processing).
- - - - -
8ed465d9 by Aaron M. Ucko at 2021-01-31T21:35:27-05:00
New upstream version 14.3.20210104+dfsg
- - - - -
5024f12c by Aaron M. Ucko at 2021-01-31T21:56:25-05:00
Merge tag 'upstream/14.3.20210104+dfsg'
Upstream version 14.3.20210104(+dfsg).
- - - - -
52ca483d by Aaron M. Ucko at 2021-01-31T22:22:30-05:00
New upstream version 14.3.20210108+dfsg
- - - - -
fb3f1606 by Aaron M. Ucko at 2021-02-06T18:01:01-05:00
Merge tag 'upstream/14.3.20210108+dfsg'
Upstream version 14.3.20210108(+dfsg).
- - - - -
558e91eb by Aaron M. Ucko at 2021-02-06T18:01:19-05:00
New upstream version 14.4.20210111+dfsg
- - - - -
23c919c3 by Aaron M. Ucko at 2021-02-06T18:02:06-05:00
Merge tag 'upstream/14.4.20210111+dfsg'
Upstream version 14.4.20210111(+dfsg).
- - - - -
767d7c3a by Aaron M. Ucko at 2021-02-06T18:14:00-05:00
New upstream version 14.4.20210115+dfsg
- - - - -
399215f8 by Aaron M. Ucko at 2021-02-06T18:22:10-05:00
New upstream version 14.5.20210119+dfsg
- - - - -
d4179b2f by Aaron M. Ucko at 2021-02-06T20:55:07-05:00
New upstream version 14.5.20210128+dfsg
- - - - -
797cf595 by Aaron M. Ucko at 2021-02-06T20:59:44-05:00
transmute.1: Update for new release (14.4.20210111[+dfsg]).
Document new HVGS section (-hgvs) and new -align column code z; tweak
other numeric column codes' descriptions per upstream.
- - - - -
2c2a932f by Aaron M. Ucko at 2021-02-06T21:00:12-05:00
Merge tag 'upstream/14.4.20210115+dfsg'
Upstream version 14.4.20210115(+dfsg).
- - - - -
a41ee8a3 by Aaron M. Ucko at 2021-02-06T21:00:12-05:00
efilter.1: Update for new release (14.4.20210115[+dfsg]).
Document new [SNP] -class choice coding.
- - - - -
4b448c8f by Aaron M. Ucko at 2021-02-06T21:00:12-05:00
Merge tag 'upstream/14.5.20210119+dfsg'
Upstream version 14.5.20210119(+dfsg).
- - - - -
e6d38bb4 by Aaron M. Ucko at 2021-02-06T21:00:12-05:00
debian/man: Update for new release (14.5.20210119[+dfsg].)
* esample.1: New -gencode mode.
* xtract.1: New Regular Expression section (-replace with suboptions
-reg and -exp).
- - - - -
863135ff by Aaron M. Ucko at 2021-02-06T21:00:12-05:00
Merge tag 'upstream/14.5.20210128+dfsg'
Upstream version 14.5.20210128(+dfsg).
- - - - -
65445355 by Aaron M. Ucko at 2021-02-06T21:28:47-05:00
debian/man: Update for new release (14.5.20210128[+dfsg].)
* transmute.1: New sections Sequence Editing (-revcomp, -remove with
options, -retain with options, and -replace with options) and
Sequence Processing (-cds2prot with options and molwt); per
upstream, rename HGVS to Variation Processing, move it to between
those new sections and String Transformations, and reword -hgvs's
description.
* xtract.1: Depunctuate -revcomp's description.
- - - - -
7ae7a7b8 by Aaron M. Ucko at 2021-02-06T21:32:00-05:00
New upstream version 14.6.20210202+dfsg
- - - - -
b56d2efd by Aaron M. Ucko at 2021-02-06T21:32:24-05:00
Merge tag 'upstream/14.6.20210202+dfsg'
Upstream version 14.6.20210202(+dfsg).
- - - - -
fd861a1c by Aaron M. Ucko at 2021-02-06T21:54:01-05:00
transmute.1: Reformat mode descriptions more compactly.
- - - - -
b49060a4 by Aaron M. Ucko at 2021-02-06T21:54:58-05:00
transmute.1: Update for new release (14.6.20210202[+dfsg]).
New Protein section (-aa1to3, -aa3to1) and -molwt option -met.
- - - - -
e8486887 by Aaron M. Ucko at 2021-02-06T21:56:21-05:00
New upstream version 14.6.20210203+dfsg
- - - - -
6e0e4131 by Aaron M. Ucko at 2021-02-06T21:57:22-05:00
Merge tag 'upstream/14.6.20210203+dfsg'
Upstream version 14.6.20210203(+dfsg).
- - - - -
6f65f816 by Aaron M. Ucko at 2021-02-06T22:00:11-05:00
transmute.1: Update for new release (14.6.20210203[+dfsg]).
New Sequence Comparison section (-diff); rename -cds2prot's -lt5 and
-gt3 options to -part5 and -part3 respectively.
- - - - -
a9c6ceea by Aaron M. Ucko at 2021-02-06T22:06:38-05:00
Finalize ncbi-entrez-direct 14.6.20210203+dfsg-1 for unstable.
- - - - -
30 changed files:
- README
- + align-columns
- common.go
- debian/changelog
- + debian/man/align-columns.1
- debian/man/edirect.1
- debian/man/efetch.1
- debian/man/efilter.1
- debian/man/esample.1
- debian/man/nquire.1
- debian/man/transmute.1
- debian/man/xtract.1
- download-ncbi-data
- download-pubmed
- ecommon.sh
- edirect.pl
- efetch
- efilter
- einfo
- elink
- epost
- esample
- esearch
- esummary
- hlp-xtract.txt
- nquire
- pm-stash
- rchive.go
- test-edirect
- test-eutils
The diff was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/ncbi-entrez-direct/-/compare/687313c879979c1b562d5a6d6adbffb585acf8cd...a9c6ceeaf4d0c82f5f574ec0aaf98b6346baf4d4
--
View it on GitLab: https://salsa.debian.org/med-team/ncbi-entrez-direct/-/compare/687313c879979c1b562d5a6d6adbffb585acf8cd...a9c6ceeaf4d0c82f5f574ec0aaf98b6346baf4d4
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20210207/7b25c06d/attachment-0001.html>
More information about the debian-med-commit
mailing list