Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
3099a10e by Andreas Tille at 2021-02-09T13:42:18+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,40 +1,40 @@
-Last-Update: Tue, 09 Feb 2021 01:42:03 +0000
+Last-Update: Tue, 09 Feb 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 183 | {imaging,covid-19} |
- orthanc | 96 | {practice,imaging,covid-19} |
+ dcmtk | 181 | {imaging,covid-19} |
+ orthanc | 100 | {practice,imaging,covid-19} |
orthanc-wsi | 51 | {laboratory,practice,his,oncology,covid-19,imaging} |
+ amide | 35 | {imaging} |
dicom3tools | 34 | {imaging} |
- amide | 30 | {imaging} |
- gdcm | 30 | {imaging-dev} |
+ gdcm | 29 | {imaging-dev} |
htsjdk | 26 | {bio-dev} |
dicomscope | 24 | {imaging} |
- gdcm | 22 | {imaging,covid-19} |
dcm2niix | 21 | {imaging} |
+ gdcm | 21 | {imaging,covid-19} |
+ nifticlib | 18 | {imaging} |
odin | 18 | {imaging,imaging-dev} |
- nifticlib | 17 | {imaging} |
- dicomnifti | 15 | {imaging} |
+ dicomnifti | 16 | {imaging} |
gnumed-server | 15 | {covid-19,practice} |
- plastimatch | 15 | {imaging} |
- minc-tools | 14 | {imaging} |
- pixelmed | 13 | {imaging} |
+ minc-tools | 15 | {imaging} |
+ plastimatch | 14 | {imaging} |
+ pixelmed | 12 | {imaging} |
gdcm | 11 | {imaging-dev} |
king | 11 | {imaging,typesetting} |
- ngs-sdk | 11 | {bio-dev} |
openslide | 11 | {imaging} |
adun.app | 10 | {bio} |
- insighttoolkit4 | 9 | {imaging-dev} |
- invesalius | 9 | {imaging} |
+ insighttoolkit4 | 10 | {imaging-dev} |
+ invesalius | 10 | {imaging} |
+ ngs-sdk | 10 | {bio-dev} |
+ nifti2dicom | 10 | {imaging} |
jebl2 | 9 | {bio-dev} |
- nifti2dicom | 9 | {imaging} |
- vtk-dicom | 9 | {imaging} |
biojava-live | 8 | {bio-dev} |
ea-utils | 8 | {bio} |
mia | 8 | {imaging} |
mipe | 8 | {bio,cloud} |
- multiqc | 8 | {covid-19,bio} |
ngs-sdk | 8 | {bio-dev} |
+ orthanc-webviewer | 8 | {imaging} |
+ vtk-dicom | 8 | {imaging} |
biomaj3-cli | 7 | {cloud} |
fastlink | 7 | {bio,cloud} |
jellyfish1 | 7 | {bio} |
@@ -43,11 +43,10 @@ Last-Update: Tue, 09 Feb 2021 01:42:03 +0000
librg-utils-perl | 7 | {bio} |
mauve-aligner | 7 | {bio} |
melting | 7 | {bio,cloud} |
+ multiqc | 7 | {covid-19,bio} |
obitools | 7 | {bio} |
- orthanc-webviewer | 7 | {imaging} |
prime-phylo | 7 | {bio,cloud} |
pymia | 7 | {imaging-dev} |
- runcircos-gui | 7 | {bio} |
tracetuner | 7 | {bio} |
beast-mcmc | 6 | {bio-phylogeny,bio} |
bio-tradis | 6 | {bio,bio-dev} |
@@ -59,8 +58,10 @@ Last-Update: Tue, 09 Feb 2021 01:42:03 +0000
ghmm | 6 | {bio} |
lamarc | 6 | {bio} |
libsbml | 6 | {bio-dev} |
+ orthanc-dicomweb | 6 | {covid-19,imaging} |
perm | 6 | {cloud,bio} |
phast | 6 | {bio} |
+ runcircos-gui | 6 | {bio} |
saint | 6 | {bio} |
spread-phy | 6 | {bio,bio-phylogeny} |
staden | 6 | {bio} |
@@ -71,9 +72,9 @@ Last-Update: Tue, 09 Feb 2021 01:42:03 +0000
busco | 5 | {covid-19,bio} |
clonalorigin | 5 | {bio} |
cufflinks | 5 | {cloud,bio} |
+ elastix | 5 | {imaging} |
libpal-java | 5 | {bio-dev} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
- orthanc-dicomweb | 5 | {covid-19,imaging} |
piler | 5 | {bio} |
prottest | 5 | {bio,bio-phylogeny} |
pscan-chip | 5 | {bio} |
@@ -90,7 +91,6 @@ Last-Update: Tue, 09 Feb 2021 01:42:03 +0000
bamkit | 4 | {covid-19,bio} |
canu | 4 | {bio} |
dicompyler | 4 | {oncology} |
- elastix | 4 | {imaging} |
embassy-domalign | 4 | {cloud,bio} |
fastml | 4 | {bio} |
hinge | 4 | {bio} |
@@ -141,7 +141,6 @@ Last-Update: Tue, 09 Feb 2021 01:42:03 +0000
nifticlib | 2 | {imaging-dev} |
openslide | 2 | {imaging-dev} |
oscar | 2 | {data,tools,practice} |
- papyrus | 2 | {imaging-dev} |
python-bcbio-gff | 2 | {bio-dev} |
segemehl | 2 | {bio} |
sift | 2 | {bio} |
@@ -178,7 +177,9 @@ Last-Update: Tue, 09 Feb 2021 01:42:03 +0000
libstatgen | 1 | {bio-dev} |
nanosv | 1 | {bio,covid-19} |
ncbi-vdb | 1 | {bio-dev} |
+ opencfu | 1 | {laboratory} |
opensurgsim | 1 | {imaging-dev} |
+ papyrus | 1 | {imaging-dev} |
pbseqlib | 1 | {bio-dev} |
pigx-rnaseq | 1 | {bio,covid-19} |
pilercr | 1 | {bio} |
@@ -190,6 +191,7 @@ Last-Update: Tue, 09 Feb 2021 01:42:03 +0000
skewer | 1 | {bio} |
svim | 1 | {bio} |
thesias | 1 | {bio,covid-19} |
+ varna | 1 | {bio} |
acedb | 0 | {cloud,bio} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
@@ -218,14 +220,13 @@ Last-Update: Tue, 09 Feb 2021 01:42:03 +0000
milib | 0 | {bio-dev,covid-19} |
mssstest | 0 | {tools} |
nifticlib | 0 | {imaging-dev} |
- opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {bio,covid-19} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
q2-sample-classifier | 0 | {bio,bio-dev} |
resfinder-db | 0 | {bio} |
samtools-legacy | 0 | {bio-dev} |
@@ -234,7 +235,6 @@ Last-Update: Tue, 09 Feb 2021 01:42:03 +0000
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
smrtanalysis | 0 | {covid-19,bio} |
- varna | 0 | {bio} |
vienna-rna | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/3099a10e70e0017e8683a79ef3c65ae0801d7942
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/3099a10e70e0017e8683a79ef3c65ae0801d7942
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