Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
76369644 by Andreas Tille at 2021-02-14T13:42:18+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,20 +1,20 @@
-Last-Update: Sun, 14 Feb 2021 01:42:03 +0000
+Last-Update: Sun, 14 Feb 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 184 | {imaging,covid-19} |
orthanc | 101 | {practice,imaging,covid-19} |
orthanc-wsi | 52 | {laboratory,practice,his,oncology,covid-19,imaging} |
- amide | 37 | {imaging} |
+ amide | 39 | {imaging} |
dicom3tools | 35 | {imaging} |
gdcm | 32 | {imaging-dev} |
- dicomscope | 27 | {imaging} |
- htsjdk | 23 | {bio-dev} |
+ dicomscope | 28 | {imaging} |
+ htsjdk | 24 | {bio-dev} |
gdcm | 22 | {imaging,covid-19} |
dcm2niix | 21 | {imaging} |
odin | 20 | {imaging,imaging-dev} |
+ dicomnifti | 18 | {imaging} |
nifticlib | 18 | {imaging} |
- dicomnifti | 17 | {imaging} |
minc-tools | 16 | {imaging} |
gnumed-server | 14 | {covid-19,practice} |
pixelmed | 14 | {imaging} |
@@ -25,8 +25,8 @@ Last-Update: Sun, 14 Feb 2021 01:42:03 +0000
invesalius | 12 | {imaging} |
adun.app | 11 | {bio} |
ngs-sdk | 11 | {bio-dev} |
- insighttoolkit4 | 10 | {imaging-dev} |
nifti2dicom | 10 | {imaging} |
+ insighttoolkit4 | 9 | {imaging-dev} |
vtk-dicom | 9 | {imaging} |
ea-utils | 8 | {bio} |
jebl2 | 8 | {bio-dev} |
@@ -43,6 +43,7 @@ Last-Update: Sun, 14 Feb 2021 01:42:03 +0000
ngs-sdk | 7 | {bio-dev} |
prime-phylo | 7 | {bio,cloud} |
beast-mcmc | 6 | {bio-phylogeny,bio} |
+ elastix | 6 | {imaging} |
embassy-domsearch | 6 | {cloud,bio} |
lagan | 6 | {bio} |
lamarc | 6 | {bio} |
@@ -61,17 +62,18 @@ Last-Update: Sun, 14 Feb 2021 01:42:03 +0000
bio-tradis | 5 | {bio,bio-dev} |
bitseq | 5 | {bio} |
brig | 5 | {bio} |
- busco | 5 | {covid-19,bio} |
cufflinks | 5 | {cloud,bio} |
+ dicompyler | 5 | {oncology} |
ecopcr | 5 | {bio} |
- elastix | 5 | {imaging} |
embassy-domainatrix | 5 | {bio,cloud} |
estscan | 5 | {bio} |
+ libminc | 5 | {imaging-dev} |
libpal-java | 5 | {bio-dev} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
libsbml | 5 | {bio-dev} |
perm | 5 | {cloud,bio} |
phast | 5 | {bio} |
+ phyutility | 5 | {bio,cloud} |
piler | 5 | {bio} |
prottest | 5 | {bio,bio-phylogeny} |
pscan-chip | 5 | {bio} |
@@ -79,31 +81,29 @@ Last-Update: Sun, 14 Feb 2021 01:42:03 +0000
rambo-k | 5 | {bio} |
rdp-classifier | 5 | {bio} |
salmid | 5 | {bio} |
- salmon | 5 | {covid-19,bio} |
seqsero | 5 | {bio} |
staden | 5 | {bio} |
arden | 4 | {bio,cloud} |
assemblytics | 4 | {bio} |
bamkit | 4 | {covid-19,bio} |
+ busco | 4 | {covid-19,bio} |
canu | 4 | {bio} |
clonalorigin | 4 | {bio} |
- dicompyler | 4 | {oncology} |
embassy-domalign | 4 | {cloud,bio} |
fastml | 4 | {bio} |
ghmm | 4 | {bio} |
hinge | 4 | {bio} |
jmodeltest | 4 | {bio,bio-phylogeny} |
- libminc | 4 | {imaging-dev} |
mhap | 4 | {bio,bio-ngs} |
microbegps | 4 | {bio} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
paraclu | 4 | {bio,cloud} |
- phyutility | 4 | {bio,cloud} |
proalign | 4 | {bio,bio-phylogeny} |
qcumber | 4 | {bio} |
rdp-alignment | 4 | {bio} |
rtax | 4 | {bio,cloud} |
+ salmon | 4 | {covid-19,bio} |
sibsim4 | 4 | {cloud,bio} |
sight | 4 | {imaging} |
soapsnp | 4 | {bio} |
@@ -119,6 +119,7 @@ Last-Update: Sun, 14 Feb 2021 01:42:03 +0000
libdivsufsort | 3 | {bio-dev} |
logol | 3 | {bio} |
ngs-sdk | 3 | {bio-dev} |
+ nifticlib | 3 | {imaging-dev} |
pbdagcon | 3 | {bio} |
placnet | 3 | {bio} |
plasmidseeker | 3 | {bio} |
@@ -137,7 +138,6 @@ Last-Update: Sun, 14 Feb 2021 01:42:03 +0000
emmax | 2 | {bio} |
gatb-core | 2 | {bio} |
metaphlan2 | 2 | {bio} |
- nifticlib | 2 | {imaging-dev} |
openslide | 2 | {imaging-dev} |
oscar | 2 | {data,tools,practice} |
segemehl | 2 | {bio} |
@@ -149,10 +149,12 @@ Last-Update: Sun, 14 Feb 2021 01:42:03 +0000
yanagiba | 2 | {covid-19,bio} |
bbmap | 1 | {covid-19,bio} |
bustools | 1 | {bio,covid-19} |
+ ctn | 1 | {imaging-dev} |
gifticlib | 1 | {imaging-dev} |
kmerresistance | 1 | {bio} |
libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
+ libvistaio | 1 | {imaging-dev} |
nanosv | 1 | {bio,covid-19} |
ncbi-vdb | 1 | {bio-dev} |
opencfu | 1 | {laboratory} |
@@ -164,6 +166,7 @@ Last-Update: Sun, 14 Feb 2021 01:42:03 +0000
pplacer | 1 | {covid-19,bio,bio-phylogeny} |
python-bcbio-gff | 1 | {bio-dev} |
sambamba | 1 | {bio} |
+ samtools-legacy | 1 | {bio-dev} |
seq-gen | 1 | {bio} |
skesa | 1 | {bio} |
skewer | 1 | {bio} |
@@ -177,7 +180,6 @@ Last-Update: Sun, 14 Feb 2021 01:42:03 +0000
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
- ctn | 0 | {imaging-dev} |
eegdev | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
fis-gtm | 0 | {his} |
@@ -210,7 +212,6 @@ Last-Update: Sun, 14 Feb 2021 01:42:03 +0000
libqes | 0 | {bio-dev} |
libseqlib | 0 | {bio-dev} |
libstatgen | 0 | {bio-dev} |
- libvistaio | 0 | {imaging-dev} |
libxdf | 0 | {imaging-dev} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
@@ -224,13 +225,13 @@ Last-Update: Sun, 14 Feb 2021 01:42:03 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {bio,covid-19} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-seqcluster | 0 | {bio} |
q2-sample-classifier | 0 | {bio,bio-dev} |
resfinder-db | 0 | {bio} |
- samtools-legacy | 0 | {bio-dev} |
sbmltoolbox | 0 | {bio-dev} |
shovill | 0 | {covid-19,bio} |
+ sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
smrtanalysis | 0 | {covid-19,bio} |
@@ -239,6 +240,5 @@ Last-Update: Sun, 14 Feb 2021 01:42:03 +0000
xdffileio | 0 | {imaging-dev} |
orthanc-gdcm | -1 | {imaging} |
orthanc-python | -1 | {covid-19} |
- sight | -1 | {imaging-dev} |
(270 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/763696449bc72a7eb42f9f922d402afce187a872
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/763696449bc72a7eb42f9f922d402afce187a872
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