Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
07ba6da5 by Andreas Tille at 2021-02-15T13:42:19+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,152 +1,152 @@
-Last-Update: Mon, 15 Feb 2021 01:42:04 +0000
+Last-Update: Mon, 15 Feb 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 184 | {imaging,covid-19} |
- orthanc | 101 | {practice,imaging,covid-19} |
+ dcmtk | 180 | {imaging,covid-19} |
+ orthanc | 100 | {practice,imaging,covid-19} |
orthanc-wsi | 52 | {laboratory,practice,his,oncology,covid-19,imaging} |
- amide | 39 | {imaging} |
+ amide | 38 | {imaging} |
dicom3tools | 35 | {imaging} |
gdcm | 32 | {imaging-dev} |
dicomscope | 28 | {imaging} |
- htsjdk | 24 | {bio-dev} |
- gdcm | 22 | {imaging,covid-19} |
+ gdcm | 23 | {imaging,covid-19} |
dcm2niix | 21 | {imaging} |
- odin | 20 | {imaging,imaging-dev} |
- dicomnifti | 18 | {imaging} |
+ htsjdk | 21 | {bio-dev} |
+ dicomnifti | 19 | {imaging} |
+ odin | 19 | {imaging,imaging-dev} |
nifticlib | 18 | {imaging} |
- minc-tools | 16 | {imaging} |
+ minc-tools | 15 | {imaging} |
+ plastimatch | 15 | {imaging} |
gnumed-server | 14 | {covid-19,practice} |
- pixelmed | 14 | {imaging} |
- plastimatch | 14 | {imaging} |
+ invesalius | 14 | {imaging} |
king | 13 | {imaging,typesetting} |
- openslide | 13 | {imaging} |
+ pixelmed | 13 | {imaging} |
gdcm | 12 | {imaging-dev} |
- invesalius | 12 | {imaging} |
- adun.app | 11 | {bio} |
+ openslide | 12 | {imaging} |
ngs-sdk | 11 | {bio-dev} |
- nifti2dicom | 10 | {imaging} |
+ nifti2dicom | 11 | {imaging} |
+ adun.app | 10 | {bio} |
+ vtk-dicom | 10 | {imaging} |
insighttoolkit4 | 9 | {imaging-dev} |
- vtk-dicom | 9 | {imaging} |
- ea-utils | 8 | {bio} |
- jebl2 | 8 | {bio-dev} |
- mia | 8 | {imaging} |
+ multiqc | 8 | {covid-19,bio} |
orthanc-webviewer | 8 | {imaging} |
- biojava-live | 7 | {bio-dev} |
- biomaj3-cli | 7 | {cloud} |
- fastlink | 7 | {bio,cloud} |
+ ea-utils | 7 | {bio} |
+ elastix | 7 | {imaging} |
+ jebl2 | 7 | {bio-dev} |
jellyfish1 | 7 | {bio} |
- librg-utils-perl | 7 | {bio} |
melting | 7 | {bio,cloud} |
- mipe | 7 | {bio,cloud} |
- multiqc | 7 | {covid-19,bio} |
+ mia | 7 | {imaging} |
ngs-sdk | 7 | {bio-dev} |
- prime-phylo | 7 | {bio,cloud} |
- beast-mcmc | 6 | {bio-phylogeny,bio} |
- elastix | 6 | {imaging} |
- embassy-domsearch | 6 | {cloud,bio} |
- lagan | 6 | {bio} |
- lamarc | 6 | {bio} |
- libncl | 6 | {bio} |
- mauve-aligner | 6 | {bio} |
+ biojava-live | 6 | {bio-dev} |
+ biomaj3-cli | 6 | {cloud} |
+ dicompyler | 6 | {oncology} |
+ fastlink | 6 | {bio,cloud} |
+ librg-utils-perl | 6 | {bio} |
+ mipe | 6 | {bio,cloud} |
obitools | 6 | {bio} |
orthanc-dicomweb | 6 | {covid-19,imaging} |
- pymia | 6 | {imaging-dev} |
- runcircos-gui | 6 | {bio} |
- saint | 6 | {bio} |
+ prime-phylo | 6 | {bio,cloud} |
spread-phy | 6 | {bio,bio-phylogeny} |
- tracetuner | 6 | {bio} |
treeview | 6 | {bio-phylogeny,bio} |
- anfo | 5 | {cloud,bio} |
bart-view | 5 | {imaging} |
- bio-tradis | 5 | {bio,bio-dev} |
- bitseq | 5 | {bio} |
- brig | 5 | {bio} |
+ beast-mcmc | 5 | {bio-phylogeny,bio} |
cufflinks | 5 | {cloud,bio} |
- dicompyler | 5 | {oncology} |
- ecopcr | 5 | {bio} |
- embassy-domainatrix | 5 | {bio,cloud} |
- estscan | 5 | {bio} |
+ embassy-domsearch | 5 | {cloud,bio} |
+ lagan | 5 | {bio} |
+ lamarc | 5 | {bio} |
libminc | 5 | {imaging-dev} |
- libpal-java | 5 | {bio-dev} |
- librdp-taxonomy-tree-java | 5 | {bio-dev} |
+ libncl | 5 | {bio} |
libsbml | 5 | {bio-dev} |
- perm | 5 | {cloud,bio} |
- phast | 5 | {bio} |
+ mauve-aligner | 5 | {bio} |
phyutility | 5 | {bio,cloud} |
- piler | 5 | {bio} |
- prottest | 5 | {bio,bio-phylogeny} |
- pscan-chip | 5 | {bio} |
- quorum | 5 | {bio} |
- rambo-k | 5 | {bio} |
- rdp-classifier | 5 | {bio} |
+ pymia | 5 | {imaging-dev} |
+ runcircos-gui | 5 | {bio} |
+ saint | 5 | {bio} |
salmid | 5 | {bio} |
- seqsero | 5 | {bio} |
- staden | 5 | {bio} |
- arden | 4 | {bio,cloud} |
- assemblytics | 4 | {bio} |
- bamkit | 4 | {covid-19,bio} |
+ salmon | 5 | {covid-19,bio} |
+ tracetuner | 5 | {bio} |
+ anfo | 4 | {cloud,bio} |
+ bio-tradis | 4 | {bio,bio-dev} |
+ bitseq | 4 | {bio} |
+ brig | 4 | {bio} |
busco | 4 | {covid-19,bio} |
canu | 4 | {bio} |
- clonalorigin | 4 | {bio} |
- embassy-domalign | 4 | {cloud,bio} |
+ ecopcr | 4 | {bio} |
+ embassy-domainatrix | 4 | {bio,cloud} |
+ estscan | 4 | {bio} |
fastml | 4 | {bio} |
- ghmm | 4 | {bio} |
hinge | 4 | {bio} |
- jmodeltest | 4 | {bio,bio-phylogeny} |
+ libpal-java | 4 | {bio-dev} |
+ librdp-taxonomy-tree-java | 4 | {bio-dev} |
mhap | 4 | {bio,bio-ngs} |
- microbegps | 4 | {bio} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
- paraclu | 4 | {bio,cloud} |
- proalign | 4 | {bio,bio-phylogeny} |
- qcumber | 4 | {bio} |
- rdp-alignment | 4 | {bio} |
- rtax | 4 | {bio,cloud} |
- salmon | 4 | {covid-19,bio} |
+ perm | 4 | {cloud,bio} |
+ phast | 4 | {bio} |
+ piler | 4 | {bio} |
+ prottest | 4 | {bio,bio-phylogeny} |
+ pscan-chip | 4 | {bio} |
+ quorum | 4 | {bio} |
+ rdp-classifier | 4 | {bio} |
sibsim4 | 4 | {cloud,bio} |
sight | 4 | {imaging} |
soapsnp | 4 | {bio} |
+ staden | 4 | {bio} |
suitename | 4 | {bio} |
- yaha | 4 | {bio} |
- blasr | 3 | {bio,bio-ngs} |
+ arden | 3 | {bio,cloud} |
+ assemblytics | 3 | {bio} |
+ bamkit | 3 | {covid-19,bio} |
cat-bat | 3 | {covid-19,bio} |
clonalframeml | 3 | {bio,covid-19} |
+ clonalorigin | 3 | {bio} |
delly | 3 | {bio,covid-19} |
+ embassy-domalign | 3 | {cloud,bio} |
fsm-lite | 3 | {bio} |
getdata | 3 | {bio} |
+ ghmm | 3 | {bio} |
ipig | 3 | {bio} |
- libdivsufsort | 3 | {bio-dev} |
+ jmodeltest | 3 | {bio,bio-phylogeny} |
logol | 3 | {bio} |
+ microbegps | 3 | {bio} |
ngs-sdk | 3 | {bio-dev} |
nifticlib | 3 | {imaging-dev} |
+ paraclu | 3 | {bio,cloud} |
pbdagcon | 3 | {bio} |
placnet | 3 | {bio} |
- plasmidseeker | 3 | {bio} |
- samblaster | 3 | {covid-19,bio} |
+ proalign | 3 | {bio,bio-phylogeny} |
+ qcumber | 3 | {bio} |
+ rambo-k | 3 | {bio} |
+ rdp-alignment | 3 | {bio} |
+ rtax | 3 | {bio,cloud} |
+ seqsero | 3 | {bio} |
sga | 3 | {bio} |
soapaligner | 3 | {bio} |
spaced | 3 | {bio} |
sprai | 3 | {bio} |
stacks | 3 | {bio} |
surankco | 3 | {bio} |
- tvc | 3 | {bio} |
- zalign | 3 | {cloud,bio} |
+ yaha | 3 | {bio} |
atropos | 2 | {bio} |
+ blasr | 2 | {bio,bio-ngs} |
blimps | 2 | {bio} |
dextractor | 2 | {bio,covid-19} |
emmax | 2 | {bio} |
gatb-core | 2 | {bio} |
+ libdivsufsort | 2 | {bio-dev} |
metaphlan2 | 2 | {bio} |
openslide | 2 | {imaging-dev} |
oscar | 2 | {data,tools,practice} |
+ plasmidseeker | 2 | {bio} |
+ samblaster | 2 | {covid-19,bio} |
segemehl | 2 | {bio} |
sift | 2 | {bio} |
spaln | 2 | {bio,covid-19} |
tophat-recondition | 2 | {covid-19,bio} |
trace2dbest | 2 | {bio} |
+ tvc | 2 | {bio} |
varscan | 2 | {covid-19,bio} |
yanagiba | 2 | {covid-19,bio} |
+ zalign | 2 | {cloud,bio} |
bbmap | 1 | {covid-19,bio} |
bustools | 1 | {bio,covid-19} |
ctn | 1 | {imaging-dev} |
@@ -218,15 +218,14 @@ Last-Update: Mon, 15 Feb 2021 01:42:04 +0000
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
milib | 0 | {bio-dev,covid-19} |
- mssstest | 0 | {tools} |
nifticlib | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {bio,covid-19} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
q2-sample-classifier | 0 | {bio,bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
@@ -238,6 +237,7 @@ Last-Update: Mon, 15 Feb 2021 01:42:04 +0000
vienna-rna | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
+ mssstest | -1 | {tools} |
orthanc-gdcm | -1 | {imaging} |
orthanc-python | -1 | {covid-19} |
(270 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/07ba6da5ea8ad0632fa040d4edde5624d8447eaa
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/07ba6da5ea8ad0632fa040d4edde5624d8447eaa
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