Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
6d9fbd12 by Andreas Tille at 2021-02-17T13:42:18+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,14 +1,14 @@
-Last-Update: Wed, 17 Feb 2021 01:42:04 +0000
+Last-Update: Wed, 17 Feb 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 179 | {imaging,covid-19} |
- orthanc | 98 | {practice,imaging,covid-19} |
- orthanc-wsi | 51 | {laboratory,practice,his,oncology,covid-19,imaging} |
- amide | 39 | {imaging} |
+ dcmtk | 180 | {imaging,covid-19} |
+ orthanc | 99 | {practice,imaging,covid-19} |
+ orthanc-wsi | 52 | {laboratory,practice,his,oncology,covid-19,imaging} |
+ amide | 40 | {imaging} |
+ gdcm | 37 | {imaging-dev} |
dicom3tools | 36 | {imaging} |
- gdcm | 36 | {imaging-dev} |
- dicomscope | 29 | {imaging} |
+ dicomscope | 32 | {imaging} |
gdcm | 24 | {imaging,covid-19} |
dcm2niix | 22 | {imaging} |
htsjdk | 22 | {bio-dev} |
@@ -19,148 +19,151 @@ Last-Update: Wed, 17 Feb 2021 01:42:04 +0000
plastimatch | 16 | {imaging} |
invesalius | 15 | {imaging} |
gnumed-server | 14 | {covid-19,practice} |
- king | 14 | {imaging,typesetting} |
openslide | 13 | {imaging} |
pixelmed | 13 | {imaging} |
+ adun.app | 12 | {bio} |
gdcm | 12 | {imaging-dev} |
- adun.app | 11 | {bio} |
- ngs-sdk | 11 | {bio-dev} |
- nifti2dicom | 11 | {imaging} |
+ king | 11 | {imaging,typesetting} |
vtk-dicom | 11 | {imaging} |
insighttoolkit4 | 10 | {imaging-dev} |
+ ngs-sdk | 10 | {bio-dev} |
+ nifti2dicom | 10 | {imaging} |
+ ea-utils | 8 | {bio} |
+ jebl2 | 8 | {bio-dev} |
+ jellyfish1 | 8 | {bio} |
+ melting | 8 | {bio,cloud} |
mia | 8 | {imaging} |
multiqc | 8 | {covid-19,bio} |
orthanc-webviewer | 8 | {imaging} |
- ea-utils | 7 | {bio} |
+ biojava-live | 7 | {bio-dev} |
elastix | 7 | {imaging} |
- jebl2 | 7 | {bio-dev} |
- jellyfish1 | 7 | {bio} |
- melting | 7 | {bio,cloud} |
+ fastlink | 7 | {bio,cloud} |
+ mipe | 7 | {bio,cloud} |
ngs-sdk | 7 | {bio-dev} |
- biojava-live | 6 | {bio-dev} |
+ spread-phy | 7 | {bio,bio-phylogeny} |
+ treeview | 7 | {bio-phylogeny,bio} |
+ beast-mcmc | 6 | {bio-phylogeny,bio} |
biomaj3-cli | 6 | {cloud} |
dicompyler | 6 | {oncology} |
- fastlink | 6 | {bio,cloud} |
+ embassy-domsearch | 6 | {cloud,bio} |
+ lamarc | 6 | {bio} |
libminc | 6 | {imaging-dev} |
- librg-utils-perl | 6 | {bio} |
- mipe | 6 | {bio,cloud} |
+ libncl | 6 | {bio} |
+ mauve-aligner | 6 | {bio} |
obitools | 6 | {bio} |
orthanc-dicomweb | 6 | {covid-19,imaging} |
prime-phylo | 6 | {bio,cloud} |
- spread-phy | 6 | {bio,bio-phylogeny} |
- treeview | 6 | {bio-phylogeny,bio} |
+ runcircos-gui | 6 | {bio} |
+ saint | 6 | {bio} |
+ salmon | 6 | {covid-19,bio} |
+ anfo | 5 | {cloud,bio} |
bart-view | 5 | {imaging} |
- beast-mcmc | 5 | {bio-phylogeny,bio} |
+ bio-tradis | 5 | {bio,bio-dev} |
+ bitseq | 5 | {bio} |
+ brig | 5 | {bio} |
+ canu | 5 | {bio} |
cufflinks | 5 | {cloud,bio} |
- embassy-domsearch | 5 | {cloud,bio} |
+ ecopcr | 5 | {bio} |
+ embassy-domainatrix | 5 | {bio,cloud} |
+ fastml | 5 | {bio} |
lagan | 5 | {bio} |
- lamarc | 5 | {bio} |
- libncl | 5 | {bio} |
+ libpal-java | 5 | {bio-dev} |
+ librdp-taxonomy-tree-java | 5 | {bio-dev} |
+ librg-utils-perl | 5 | {bio} |
libsbml | 5 | {bio-dev} |
- mauve-aligner | 5 | {bio} |
+ mhap | 5 | {bio,bio-ngs} |
+ perm | 5 | {cloud,bio} |
+ phast | 5 | {bio} |
+ phyutility | 5 | {bio,cloud} |
+ piler | 5 | {bio} |
+ prottest | 5 | {bio,bio-phylogeny} |
+ pscan-chip | 5 | {bio} |
pymia | 5 | {imaging-dev} |
- runcircos-gui | 5 | {bio} |
- saint | 5 | {bio} |
+ quorum | 5 | {bio} |
+ rdp-classifier | 5 | {bio} |
salmid | 5 | {bio} |
- salmon | 5 | {covid-19,bio} |
+ sibsim4 | 5 | {cloud,bio} |
+ soapsnp | 5 | {bio} |
+ staden | 5 | {bio} |
+ suitename | 5 | {bio} |
tracetuner | 5 | {bio} |
- anfo | 4 | {cloud,bio} |
- bio-tradis | 4 | {bio,bio-dev} |
- bitseq | 4 | {bio} |
- brig | 4 | {bio} |
+ arden | 4 | {bio,cloud} |
+ assemblytics | 4 | {bio} |
+ atropos | 4 | {bio} |
+ bamkit | 4 | {covid-19,bio} |
busco | 4 | {covid-19,bio} |
- canu | 4 | {bio} |
- ecopcr | 4 | {bio} |
- embassy-domainatrix | 4 | {bio,cloud} |
+ clonalframeml | 4 | {bio,covid-19} |
+ clonalorigin | 4 | {bio} |
+ embassy-domalign | 4 | {cloud,bio} |
estscan | 4 | {bio} |
- fastml | 4 | {bio} |
+ fsm-lite | 4 | {bio} |
+ getdata | 4 | {bio} |
hinge | 4 | {bio} |
- libpal-java | 4 | {bio-dev} |
- librdp-taxonomy-tree-java | 4 | {bio-dev} |
- mhap | 4 | {bio,bio-ngs} |
+ ipig | 4 | {bio} |
+ jmodeltest | 4 | {bio,bio-phylogeny} |
+ libdivsufsort | 4 | {bio-dev} |
+ microbegps | 4 | {bio} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
- perm | 4 | {cloud,bio} |
- phast | 4 | {bio} |
- phyutility | 4 | {bio,cloud} |
- piler | 4 | {bio} |
- prottest | 4 | {bio,bio-phylogeny} |
- pscan-chip | 4 | {bio} |
- quorum | 4 | {bio} |
- rdp-classifier | 4 | {bio} |
- sibsim4 | 4 | {cloud,bio} |
+ paraclu | 4 | {bio,cloud} |
+ placnet | 4 | {bio} |
+ proalign | 4 | {bio,bio-phylogeny} |
+ qcumber | 4 | {bio} |
+ rambo-k | 4 | {bio} |
+ rdp-alignment | 4 | {bio} |
+ rtax | 4 | {bio,cloud} |
+ seqsero | 4 | {bio} |
+ sga | 4 | {bio} |
sight | 4 | {imaging} |
- soapsnp | 4 | {bio} |
- staden | 4 | {bio} |
- suitename | 4 | {bio} |
- arden | 3 | {bio,cloud} |
- assemblytics | 3 | {bio} |
- atropos | 3 | {bio} |
- bamkit | 3 | {covid-19,bio} |
+ soapaligner | 4 | {bio} |
+ spaced | 4 | {bio} |
+ sprai | 4 | {bio} |
+ stacks | 4 | {bio} |
+ surankco | 4 | {bio} |
+ yaha | 4 | {bio} |
cat-bat | 3 | {covid-19,bio} |
- clonalframeml | 3 | {bio,covid-19} |
- clonalorigin | 3 | {bio} |
delly | 3 | {bio,covid-19} |
- embassy-domalign | 3 | {cloud,bio} |
- fsm-lite | 3 | {bio} |
- getdata | 3 | {bio} |
+ gatb-core | 3 | {bio} |
ghmm | 3 | {bio} |
- ipig | 3 | {bio} |
- jmodeltest | 3 | {bio,bio-phylogeny} |
logol | 3 | {bio} |
- microbegps | 3 | {bio} |
ngs-sdk | 3 | {bio-dev} |
nifticlib | 3 | {imaging-dev} |
- paraclu | 3 | {bio,cloud} |
pbdagcon | 3 | {bio} |
- placnet | 3 | {bio} |
- proalign | 3 | {bio,bio-phylogeny} |
- qcumber | 3 | {bio} |
- rambo-k | 3 | {bio} |
- rdp-alignment | 3 | {bio} |
- rtax | 3 | {bio,cloud} |
samblaster | 3 | {covid-19,bio} |
- seqsero | 3 | {bio} |
- sga | 3 | {bio} |
- soapaligner | 3 | {bio} |
- spaced | 3 | {bio} |
- sprai | 3 | {bio} |
- stacks | 3 | {bio} |
- surankco | 3 | {bio} |
- yaha | 3 | {bio} |
+ spaln | 3 | {bio,covid-19} |
+ varscan | 3 | {covid-19,bio} |
+ zalign | 3 | {cloud,bio} |
blasr | 2 | {bio,bio-ngs} |
blimps | 2 | {bio} |
dextractor | 2 | {bio,covid-19} |
emmax | 2 | {bio} |
- gatb-core | 2 | {bio} |
- libdivsufsort | 2 | {bio-dev} |
+ kmerresistance | 2 | {bio} |
metaphlan2 | 2 | {bio} |
+ nanosv | 2 | {bio,covid-19} |
openslide | 2 | {imaging-dev} |
plasmidseeker | 2 | {bio} |
sambamba | 2 | {bio} |
segemehl | 2 | {bio} |
sift | 2 | {bio} |
- spaln | 2 | {bio,covid-19} |
+ skesa | 2 | {bio} |
tophat-recondition | 2 | {covid-19,bio} |
trace2dbest | 2 | {bio} |
tvc | 2 | {bio} |
- varscan | 2 | {covid-19,bio} |
yanagiba | 2 | {covid-19,bio} |
- zalign | 2 | {cloud,bio} |
bbmap | 1 | {covid-19,bio} |
bustools | 1 | {bio,covid-19} |
ctn | 1 | {imaging-dev} |
+ emboss-explorer | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
- kmerresistance | 1 | {bio} |
libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- nanosv | 1 | {bio,covid-19} |
ncbi-vdb | 1 | {bio-dev} |
opencfu | 1 | {laboratory} |
opensurgsim | 1 | {imaging-dev} |
oscar | 1 | {data,tools,practice} |
papyrus | 1 | {imaging-dev} |
+ parallel-fastq-dump | 1 | {covid-19} |
pigx-rnaseq | 1 | {bio,covid-19} |
pilercr | 1 | {bio} |
pique | 1 | {bio} |
@@ -168,7 +171,6 @@ Last-Update: Wed, 17 Feb 2021 01:42:04 +0000
python-bcbio-gff | 1 | {bio-dev} |
samtools-legacy | 1 | {bio-dev} |
seq-gen | 1 | {bio} |
- skesa | 1 | {bio} |
skewer | 1 | {bio} |
srf | 1 | {bio-dev} |
svim | 1 | {bio} |
@@ -181,7 +183,6 @@ Last-Update: Wed, 17 Feb 2021 01:42:04 +0000
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
eegdev | 0 | {imaging-dev} |
- emboss-explorer | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
htscodecs | 0 | {covid-19,bio-dev} |
@@ -220,7 +221,6 @@ Last-Update: Wed, 17 Feb 2021 01:42:04 +0000
milib | 0 | {bio-dev,covid-19} |
nifticlib | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
- parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {bio,covid-19} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/6d9fbd123b3b0b1176ecaae94328eff5d4507328
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/6d9fbd123b3b0b1176ecaae94328eff5d4507328
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