[med-svn] [Git][med-team/biomaj3][master] remove drmaa package requirement and feature due to blocking drmaa package issue

[Olivier Sallou]

Olivier Sallou pushed to branch master at Debian Med / biomaj3


Commits:
7c6b1100 by Olivier Sallou at 2021-02-19T10:27:50+00:00
remove drmaa package requirement and feature due to blocking drmaa package issue

- - - - -


3 changed files:

- debian/changelog
- + debian/patches/fix_remove_drmaa.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+biomaj3 (3.1.18-2) unstable; urgency=medium
+
+  * Remove drmaa support (optional feature) due to drmaa package
+    migration issue on 0.7.9-2 
+
+ -- Olivier Sallou <osallou at debian.org>  Fri, 19 Feb 2021 10:25:44 +0000
+
 biomaj3 (3.1.18-1) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/patches/fix_remove_drmaa.patch
=====================================
@@ -0,0 +1,41 @@
+--- a/docs/conf.py
++++ b/docs/conf.py
+@@ -22,7 +22,7 @@
+     def __getattr__(cls, name):
+             return Mock()
+ 
+-MOCK_MODULES = ['pycurl', 'pymongo', 'elasticsearch', 'drmaa',
++MOCK_MODULES = ['pycurl', 'pymongo', 'elasticsearch',
+                 'biomaj_download',
+                 'biomaj_download.downloadclient',
+                 'biomaj_download.download',
+--- a/docs/requirements.txt
++++ b/docs/requirements.txt
+@@ -4,7 +4,6 @@
+ tabulate
+ ldap3
+ py-bcrypt
+-drmaa
+ future
+ elasticsearch
+ biomaj_core
+--- a/requirements.txt
++++ b/requirements.txt
+@@ -9,7 +9,6 @@
+ pycurl
+ tabulate
+ py-bcrypt
+-drmaa
+ future
+ elasticsearch
+ requests
+--- a/setup.py
++++ b/setup.py
+@@ -65,7 +65,6 @@
+                          'pymongo>=3.2',
+                          'pycurl',
+                          'py-bcrypt',
+-                         'drmaa',
+                          'future',
+                          'tabulate',
+                          'requests',


=====================================
debian/patches/series
=====================================
@@ -1 +1,2 @@
 fix_remove_influxdb.patch
+fix_remove_drmaa.patch



View it on GitLab: https://salsa.debian.org/med-team/biomaj3/-/commit/7c6b110038480242fcb6a59c05728af260ecad65

-- 
View it on GitLab: https://salsa.debian.org/med-team/biomaj3/-/commit/7c6b110038480242fcb6a59c05728af260ecad65
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