Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
5997783d by Andreas Tille at 2021-02-19T13:42:18+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,155 +1,156 @@
-Last-Update: Fri, 19 Feb 2021 01:42:03 +0000
+Last-Update: Fri, 19 Feb 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 180 | {imaging,covid-19} |
+ dcmtk | 184 | {imaging,covid-19} |
orthanc | 98 | {practice,imaging,covid-19} |
- orthanc-wsi | 50 | {laboratory,practice,his,oncology,covid-19,imaging} |
- amide | 41 | {imaging} |
- gdcm | 39 | {imaging-dev} |
- dicom3tools | 37 | {imaging} |
- dicomscope | 32 | {imaging} |
- gdcm | 24 | {imaging,covid-19} |
+ orthanc-wsi | 48 | {laboratory,practice,his,oncology,covid-19,imaging} |
+ amide | 40 | {imaging} |
+ gdcm | 40 | {imaging-dev} |
+ dicom3tools | 35 | {imaging} |
+ dicomscope | 30 | {imaging} |
htsjdk | 24 | {bio-dev} |
- dcm2niix | 21 | {imaging} |
- dicomnifti | 20 | {imaging} |
- odin | 20 | {imaging,imaging-dev} |
- nifticlib | 19 | {imaging} |
- minc-tools | 16 | {imaging} |
- plastimatch | 16 | {imaging} |
+ gdcm | 22 | {imaging,covid-19} |
+ dcm2niix | 19 | {imaging} |
+ odin | 19 | {imaging,imaging-dev} |
+ dicomnifti | 18 | {imaging} |
+ nifticlib | 17 | {imaging} |
invesalius | 15 | {imaging} |
- gnumed-server | 14 | {covid-19,practice} |
- openslide | 13 | {imaging} |
- pixelmed | 13 | {imaging} |
- gdcm | 12 | {imaging-dev} |
+ minc-tools | 15 | {imaging} |
+ plastimatch | 14 | {imaging} |
+ gnumed-server | 13 | {covid-19,practice} |
adun.app | 11 | {bio} |
- king | 11 | {imaging,typesetting} |
ngs-sdk | 11 | {bio-dev} |
+ openslide | 11 | {imaging} |
+ pixelmed | 11 | {imaging} |
vtk-dicom | 11 | {imaging} |
+ gdcm | 10 | {imaging-dev} |
insighttoolkit4 | 10 | {imaging-dev} |
- nifti2dicom | 10 | {imaging} |
- mia | 9 | {imaging} |
+ king | 10 | {imaging,typesetting} |
+ melting | 9 | {bio,cloud} |
+ nifti2dicom | 9 | {imaging} |
orthanc-webviewer | 9 | {imaging} |
- melting | 8 | {bio,cloud} |
+ biojava-live | 8 | {bio-dev} |
+ jebl2 | 8 | {bio-dev} |
+ jellyfish1 | 8 | {bio} |
+ mia | 8 | {imaging} |
multiqc | 8 | {covid-19,bio} |
- biojava-live | 7 | {bio-dev} |
ea-utils | 7 | {bio} |
elastix | 7 | {imaging} |
- jebl2 | 7 | {bio-dev} |
- jellyfish1 | 7 | {bio} |
+ fastlink | 7 | {bio,cloud} |
+ lamarc | 7 | {bio} |
+ mipe | 7 | {bio,cloud} |
ngs-sdk | 7 | {bio-dev} |
treeview | 7 | {bio-phylogeny,bio} |
+ anfo | 6 | {cloud,bio} |
+ biomaj3-cli | 6 | {cloud} |
dicompyler | 6 | {oncology} |
- fastlink | 6 | {bio,cloud} |
- lamarc | 6 | {bio} |
+ embassy-domsearch | 6 | {cloud,bio} |
+ lagan | 6 | {bio} |
libminc | 6 | {imaging-dev} |
- libncl | 6 | {bio} |
mauve-aligner | 6 | {bio} |
- mipe | 6 | {bio,cloud} |
obitools | 6 | {bio} |
- orthanc-dicomweb | 6 | {covid-19,imaging} |
+ perm | 6 | {cloud,bio} |
+ phast | 6 | {bio} |
+ phyutility | 6 | {bio,cloud} |
+ prime-phylo | 6 | {bio,cloud} |
+ quorum | 6 | {bio} |
runcircos-gui | 6 | {bio} |
saint | 6 | {bio} |
salmon | 6 | {covid-19,bio} |
+ sibsim4 | 6 | {cloud,bio} |
+ soapsnp | 6 | {bio} |
spread-phy | 6 | {bio,bio-phylogeny} |
- anfo | 5 | {cloud,bio} |
+ staden | 6 | {bio} |
+ tracetuner | 6 | {bio} |
+ arden | 5 | {bio,cloud} |
bart-view | 5 | {imaging} |
beast-mcmc | 5 | {bio-phylogeny,bio} |
- biomaj3-cli | 5 | {cloud} |
bio-tradis | 5 | {bio,bio-dev} |
+ bitseq | 5 | {bio} |
brig | 5 | {bio} |
canu | 5 | {bio} |
+ clonalframeml | 5 | {bio,covid-19} |
cufflinks | 5 | {cloud,bio} |
ecopcr | 5 | {bio} |
- embassy-domsearch | 5 | {cloud,bio} |
- lagan | 5 | {bio} |
- libpal-java | 5 | {bio-dev} |
- librdp-taxonomy-tree-java | 5 | {bio-dev} |
- libsbml | 5 | {bio-dev} |
- mhap | 5 | {bio,bio-ngs} |
- perm | 5 | {cloud,bio} |
- phast | 5 | {bio} |
- phyutility | 5 | {bio,cloud} |
+ embassy-domainatrix | 5 | {bio,cloud} |
+ embassy-domalign | 5 | {cloud,bio} |
+ hinge | 5 | {bio} |
+ ipig | 5 | {bio} |
+ libncl | 5 | {bio} |
+ librg-utils-perl | 5 | {bio} |
+ orthanc-dicomweb | 5 | {covid-19,imaging} |
+ paraclu | 5 | {bio,cloud} |
piler | 5 | {bio} |
- prime-phylo | 5 | {bio,cloud} |
- prottest | 5 | {bio,bio-phylogeny} |
+ proalign | 5 | {bio,bio-phylogeny} |
pscan-chip | 5 | {bio} |
pymia | 5 | {imaging-dev} |
- quorum | 5 | {bio} |
- rdp-classifier | 5 | {bio} |
+ rtax | 5 | {bio,cloud} |
salmid | 5 | {bio} |
- sibsim4 | 5 | {cloud,bio} |
- soapsnp | 5 | {bio} |
- staden | 5 | {bio} |
- tracetuner | 5 | {bio} |
- arden | 4 | {bio,cloud} |
+ seqsero | 5 | {bio} |
+ soapaligner | 5 | {bio} |
+ yaha | 5 | {bio} |
assemblytics | 4 | {bio} |
atropos | 4 | {bio} |
bamkit | 4 | {covid-19,bio} |
- bitseq | 4 | {bio} |
busco | 4 | {covid-19,bio} |
- clonalframeml | 4 | {bio,covid-19} |
clonalorigin | 4 | {bio} |
- embassy-domainatrix | 4 | {bio,cloud} |
- embassy-domalign | 4 | {cloud,bio} |
+ delly | 4 | {bio,covid-19} |
+ estscan | 4 | {bio} |
fastml | 4 | {bio} |
fsm-lite | 4 | {bio} |
+ gatb-core | 4 | {bio} |
getdata | 4 | {bio} |
- hinge | 4 | {bio} |
- ipig | 4 | {bio} |
jmodeltest | 4 | {bio,bio-phylogeny} |
libdivsufsort | 4 | {bio-dev} |
- librg-utils-perl | 4 | {bio} |
+ libpal-java | 4 | {bio-dev} |
+ librdp-taxonomy-tree-java | 4 | {bio-dev} |
+ libsbml | 4 | {bio-dev} |
+ mhap | 4 | {bio,bio-ngs} |
microbegps | 4 | {bio} |
ngs-sdk | 4 | {bio-dev} |
- orthanc-mysql | 4 | {imaging} |
- orthanc-postgresql | 4 | {imaging} |
- paraclu | 4 | {bio,cloud} |
placnet | 4 | {bio} |
- proalign | 4 | {bio,bio-phylogeny} |
+ prottest | 4 | {bio,bio-phylogeny} |
qcumber | 4 | {bio} |
rambo-k | 4 | {bio} |
rdp-alignment | 4 | {bio} |
- rtax | 4 | {bio,cloud} |
- seqsero | 4 | {bio} |
+ rdp-classifier | 4 | {bio} |
+ samblaster | 4 | {covid-19,bio} |
sga | 4 | {bio} |
- sight | 4 | {imaging} |
- soapaligner | 4 | {bio} |
spaced | 4 | {bio} |
sprai | 4 | {bio} |
stacks | 4 | {bio} |
suitename | 4 | {bio} |
surankco | 4 | {bio} |
- yaha | 4 | {bio} |
+ zalign | 4 | {cloud,bio} |
+ blasr | 3 | {bio,bio-ngs} |
cat-bat | 3 | {covid-19,bio} |
- delly | 3 | {bio,covid-19} |
- estscan | 3 | {bio} |
- gatb-core | 3 | {bio} |
+ ghmm | 3 | {bio} |
logol | 3 | {bio} |
nifticlib | 3 | {imaging-dev} |
+ orthanc-mysql | 3 | {imaging} |
+ orthanc-postgresql | 3 | {imaging} |
pbdagcon | 3 | {bio} |
- samblaster | 3 | {covid-19,bio} |
+ segemehl | 3 | {bio} |
+ sight | 3 | {imaging} |
spaln | 3 | {bio,covid-19} |
+ tvc | 3 | {bio} |
varscan | 3 | {covid-19,bio} |
- zalign | 3 | {cloud,bio} |
- blasr | 2 | {bio,bio-ngs} |
blimps | 2 | {bio} |
dextractor | 2 | {bio,covid-19} |
emmax | 2 | {bio} |
- ghmm | 2 | {bio} |
kmerresistance | 2 | {bio} |
metaphlan2 | 2 | {bio} |
nanosv | 2 | {bio,covid-19} |
openslide | 2 | {imaging-dev} |
plasmidseeker | 2 | {bio} |
sambamba | 2 | {bio} |
- segemehl | 2 | {bio} |
sift | 2 | {bio} |
skesa | 2 | {bio} |
tophat-recondition | 2 | {covid-19,bio} |
trace2dbest | 2 | {bio} |
- tvc | 2 | {bio} |
yanagiba | 2 | {covid-19,bio} |
+ acedb | 1 | {cloud,bio} |
bbmap | 1 | {covid-19,bio} |
bustools | 1 | {bio,covid-19} |
ctn | 1 | {imaging-dev} |
@@ -161,6 +162,7 @@ Last-Update: Fri, 19 Feb 2021 01:42:03 +0000
ncbi-vdb | 1 | {bio-dev} |
opencfu | 1 | {laboratory} |
opensurgsim | 1 | {imaging-dev} |
+ orthanc-gdcm | 1 | {imaging} |
oscar | 1 | {data,tools,practice} |
papyrus | 1 | {imaging-dev} |
parallel-fastq-dump | 1 | {covid-19} |
@@ -172,11 +174,9 @@ Last-Update: Fri, 19 Feb 2021 01:42:03 +0000
samtools-legacy | 1 | {bio-dev} |
seq-gen | 1 | {bio} |
skewer | 1 | {bio} |
- srf | 1 | {bio-dev} |
svim | 1 | {bio} |
thesias | 1 | {bio,covid-19} |
varna | 1 | {bio} |
- acedb | 0 | {cloud,bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
@@ -234,11 +234,11 @@ Last-Update: Fri, 19 Feb 2021 01:42:03 +0000
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
smrtanalysis | 0 | {covid-19,bio} |
+ srf | 0 | {bio-dev} |
vienna-rna | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
mssstest | -1 | {tools} |
- orthanc-gdcm | -1 | {imaging} |
orthanc-python | -1 | {covid-19} |
(270 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5997783d999c5441af318300caebc6fa84392165
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5997783d999c5441af318300caebc6fa84392165
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