Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
79aec379 by Andreas Tille at 2021-02-21T13:42:19+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,39 +1,39 @@
-Last-Update: Sun, 21 Feb 2021 01:42:03 +0000
+Last-Update: Sun, 21 Feb 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 183 | {imaging,covid-19} |
- orthanc | 97 | {practice,imaging,covid-19} |
+ dcmtk | 187 | {imaging,covid-19} |
+ orthanc | 98 | {practice,imaging,covid-19} |
orthanc-wsi | 48 | {laboratory,practice,his,oncology,covid-19,imaging} |
- amide | 39 | {imaging} |
- gdcm | 39 | {imaging-dev} |
- dicom3tools | 35 | {imaging} |
- dicomscope | 29 | {imaging} |
- htsjdk | 24 | {bio-dev} |
- gdcm | 21 | {imaging,covid-19} |
- odin | 19 | {imaging,imaging-dev} |
- dcm2niix | 18 | {imaging} |
- dicomnifti | 18 | {imaging} |
- nifticlib | 18 | {imaging} |
+ gdcm | 40 | {imaging-dev} |
+ amide | 38 | {imaging} |
+ dicom3tools | 34 | {imaging} |
+ dicomscope | 28 | {imaging} |
+ htsjdk | 23 | {bio-dev} |
+ gdcm | 20 | {imaging,covid-19} |
+ odin | 18 | {imaging,imaging-dev} |
+ dcm2niix | 17 | {imaging} |
+ dicomnifti | 17 | {imaging} |
+ nifticlib | 17 | {imaging} |
+ gnumed-server | 15 | {covid-19,practice} |
invesalius | 15 | {imaging} |
- minc-tools | 15 | {imaging} |
- gnumed-server | 14 | {covid-19,practice} |
+ minc-tools | 14 | {imaging} |
plastimatch | 14 | {imaging} |
adun.app | 11 | {bio} |
gdcm | 11 | {imaging-dev} |
ngs-sdk | 11 | {bio-dev} |
- openslide | 11 | {imaging} |
pixelmed | 11 | {imaging} |
vtk-dicom | 11 | {imaging} |
- insighttoolkit4 | 9 | {imaging-dev} |
- king | 9 | {imaging,typesetting} |
+ openslide | 10 | {imaging} |
melting | 9 | {bio,cloud} |
- nifti2dicom | 9 | {imaging} |
orthanc-webviewer | 9 | {imaging} |
+ insighttoolkit4 | 8 | {imaging-dev} |
jebl2 | 8 | {bio-dev} |
jellyfish1 | 8 | {bio} |
+ king | 8 | {imaging,typesetting} |
mia | 8 | {imaging} |
multiqc | 8 | {covid-19,bio} |
+ nifti2dicom | 8 | {imaging} |
biojava-live | 7 | {bio-dev} |
ea-utils | 7 | {bio} |
elastix | 7 | {imaging} |
@@ -46,8 +46,10 @@ Last-Update: Sun, 21 Feb 2021 01:42:03 +0000
embassy-domsearch | 6 | {cloud,bio} |
lagan | 6 | {bio} |
lamarc | 6 | {bio} |
- libminc | 6 | {imaging-dev} |
+ librg-utils-perl | 6 | {bio} |
+ libsbml | 6 | {bio-dev} |
obitools | 6 | {bio} |
+ orthanc-dicomweb | 6 | {covid-19,imaging} |
perm | 6 | {cloud,bio} |
phast | 6 | {bio} |
phyutility | 6 | {bio,cloud} |
@@ -57,7 +59,6 @@ Last-Update: Sun, 21 Feb 2021 01:42:03 +0000
saint | 6 | {bio} |
salmon | 6 | {covid-19,bio} |
sibsim4 | 6 | {cloud,bio} |
- soapaligner | 6 | {bio} |
soapsnp | 6 | {bio} |
spread-phy | 6 | {bio,bio-phylogeny} |
arden | 5 | {bio,cloud} |
@@ -69,16 +70,15 @@ Last-Update: Sun, 21 Feb 2021 01:42:03 +0000
brig | 5 | {bio} |
canu | 5 | {bio} |
clonalframeml | 5 | {bio,covid-19} |
- cufflinks | 5 | {cloud,bio} |
ecopcr | 5 | {bio} |
embassy-domainatrix | 5 | {bio,cloud} |
embassy-domalign | 5 | {cloud,bio} |
hinge | 5 | {bio} |
ipig | 5 | {bio} |
+ libminc | 5 | {imaging-dev} |
libncl | 5 | {bio} |
- librg-utils-perl | 5 | {bio} |
mauve-aligner | 5 | {bio} |
- orthanc-dicomweb | 5 | {covid-19,imaging} |
+ ngs-sdk | 5 | {bio-dev} |
paraclu | 5 | {bio,cloud} |
piler | 5 | {bio} |
proalign | 5 | {bio,bio-phylogeny} |
@@ -87,6 +87,7 @@ Last-Update: Sun, 21 Feb 2021 01:42:03 +0000
rtax | 5 | {bio,cloud} |
salmid | 5 | {bio} |
seqsero | 5 | {bio} |
+ soapaligner | 5 | {bio} |
staden | 5 | {bio} |
tracetuner | 5 | {bio} |
yaha | 5 | {bio} |
@@ -95,6 +96,7 @@ Last-Update: Sun, 21 Feb 2021 01:42:03 +0000
bamkit | 4 | {covid-19,bio} |
busco | 4 | {covid-19,bio} |
clonalorigin | 4 | {bio} |
+ cufflinks | 4 | {cloud,bio} |
delly | 4 | {bio,covid-19} |
estscan | 4 | {bio} |
fastml | 4 | {bio} |
@@ -105,10 +107,8 @@ Last-Update: Sun, 21 Feb 2021 01:42:03 +0000
libdivsufsort | 4 | {bio-dev} |
libpal-java | 4 | {bio-dev} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
- libsbml | 4 | {bio-dev} |
mhap | 4 | {bio,bio-ngs} |
microbegps | 4 | {bio} |
- ngs-sdk | 4 | {bio-dev} |
placnet | 4 | {bio} |
prottest | 4 | {bio,bio-phylogeny} |
qcumber | 4 | {bio} |
@@ -124,28 +124,28 @@ Last-Update: Sun, 21 Feb 2021 01:42:03 +0000
surankco | 4 | {bio} |
zalign | 4 | {cloud,bio} |
blasr | 3 | {bio,bio-ngs} |
+ blimps | 3 | {bio} |
cat-bat | 3 | {covid-19,bio} |
ghmm | 3 | {bio} |
logol | 3 | {bio} |
- nifticlib | 3 | {imaging-dev} |
+ openslide | 3 | {imaging-dev} |
orthanc-mysql | 3 | {imaging} |
orthanc-postgresql | 3 | {imaging} |
pbdagcon | 3 | {bio} |
segemehl | 3 | {bio} |
+ sift | 3 | {bio} |
sight | 3 | {imaging} |
spaln | 3 | {bio,covid-19} |
tvc | 3 | {bio} |
varscan | 3 | {covid-19,bio} |
- blimps | 2 | {bio} |
dextractor | 2 | {bio,covid-19} |
emmax | 2 | {bio} |
kmerresistance | 2 | {bio} |
metaphlan2 | 2 | {bio} |
nanosv | 2 | {bio,covid-19} |
- openslide | 2 | {imaging-dev} |
+ nifticlib | 2 | {imaging-dev} |
plasmidseeker | 2 | {bio} |
sambamba | 2 | {bio} |
- sift | 2 | {bio} |
skesa | 2 | {bio} |
tophat-recondition | 2 | {covid-19,bio} |
trace2dbest | 2 | {bio} |
@@ -174,6 +174,7 @@ Last-Update: Sun, 21 Feb 2021 01:42:03 +0000
samtools-legacy | 1 | {bio-dev} |
seq-gen | 1 | {bio} |
skewer | 1 | {bio} |
+ srf | 1 | {bio-dev} |
svim | 1 | {bio} |
thesias | 1 | {bio,covid-19} |
varna | 1 | {bio} |
@@ -224,8 +225,8 @@ Last-Update: Sun, 21 Feb 2021 01:42:03 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {bio,covid-19} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
q2-sample-classifier | 0 | {bio,bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
@@ -234,7 +235,6 @@ Last-Update: Sun, 21 Feb 2021 01:42:03 +0000
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
smrtanalysis | 0 | {covid-19,bio} |
- srf | 0 | {bio-dev} |
vienna-rna | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/79aec379ae7844f75c935a3eec1ed58169a0f05a
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/79aec379ae7844f75c935a3eec1ed58169a0f05a
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