Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
243e6adb by Andreas Tille at 2021-02-22T13:42:23+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,154 +1,150 @@
-Last-Update: Mon, 22 Feb 2021 01:42:04 +0000
+Last-Update: Mon, 22 Feb 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 187 | {imaging,covid-19} |
- orthanc | 98 | {practice,imaging,covid-19} |
+ dcmtk | 184 | {imaging,covid-19} |
+ orthanc | 97 | {practice,imaging,covid-19} |
orthanc-wsi | 48 | {laboratory,practice,his,oncology,covid-19,imaging} |
- gdcm | 40 | {imaging-dev} |
- amide | 38 | {imaging} |
- dicom3tools | 34 | {imaging} |
+ gdcm | 43 | {imaging-dev} |
+ amide | 39 | {imaging} |
+ dicom3tools | 33 | {imaging} |
dicomscope | 28 | {imaging} |
- htsjdk | 23 | {bio-dev} |
+ htsjdk | 22 | {bio-dev} |
gdcm | 20 | {imaging,covid-19} |
+ dcm2niix | 18 | {imaging} |
odin | 18 | {imaging,imaging-dev} |
- dcm2niix | 17 | {imaging} |
dicomnifti | 17 | {imaging} |
- nifticlib | 17 | {imaging} |
gnumed-server | 15 | {covid-19,practice} |
invesalius | 15 | {imaging} |
minc-tools | 14 | {imaging} |
plastimatch | 14 | {imaging} |
- adun.app | 11 | {bio} |
+ nifticlib | 13 | {imaging} |
gdcm | 11 | {imaging-dev} |
ngs-sdk | 11 | {bio-dev} |
pixelmed | 11 | {imaging} |
vtk-dicom | 11 | {imaging} |
+ adun.app | 10 | {bio} |
openslide | 10 | {imaging} |
- melting | 9 | {bio,cloud} |
orthanc-webviewer | 9 | {imaging} |
insighttoolkit4 | 8 | {imaging-dev} |
- jebl2 | 8 | {bio-dev} |
- jellyfish1 | 8 | {bio} |
king | 8 | {imaging,typesetting} |
+ melting | 8 | {bio,cloud} |
mia | 8 | {imaging} |
multiqc | 8 | {covid-19,bio} |
nifti2dicom | 8 | {imaging} |
- biojava-live | 7 | {bio-dev} |
- ea-utils | 7 | {bio} |
elastix | 7 | {imaging} |
- fastlink | 7 | {bio,cloud} |
- mipe | 7 | {bio,cloud} |
- ngs-sdk | 7 | {bio-dev} |
- treeview | 7 | {bio-phylogeny,bio} |
- anfo | 6 | {cloud,bio} |
- dicompyler | 6 | {oncology} |
- embassy-domsearch | 6 | {cloud,bio} |
- lagan | 6 | {bio} |
- lamarc | 6 | {bio} |
- librg-utils-perl | 6 | {bio} |
+ jebl2 | 7 | {bio-dev} |
+ jellyfish1 | 7 | {bio} |
+ biojava-live | 6 | {bio-dev} |
+ ea-utils | 6 | {bio} |
+ fastlink | 6 | {bio,cloud} |
libsbml | 6 | {bio-dev} |
+ ngs-sdk | 6 | {bio-dev} |
obitools | 6 | {bio} |
orthanc-dicomweb | 6 | {covid-19,imaging} |
- perm | 6 | {cloud,bio} |
- phast | 6 | {bio} |
- phyutility | 6 | {bio,cloud} |
- prime-phylo | 6 | {bio,cloud} |
- quorum | 6 | {bio} |
- runcircos-gui | 6 | {bio} |
- saint | 6 | {bio} |
- salmon | 6 | {covid-19,bio} |
- sibsim4 | 6 | {cloud,bio} |
- soapsnp | 6 | {bio} |
- spread-phy | 6 | {bio,bio-phylogeny} |
- arden | 5 | {bio,cloud} |
+ treeview | 6 | {bio-phylogeny,bio} |
+ anfo | 5 | {cloud,bio} |
bart-view | 5 | {imaging} |
- beast-mcmc | 5 | {bio-phylogeny,bio} |
- biomaj3-cli | 5 | {cloud} |
- bio-tradis | 5 | {bio,bio-dev} |
- bitseq | 5 | {bio} |
- brig | 5 | {bio} |
- canu | 5 | {bio} |
- clonalframeml | 5 | {bio,covid-19} |
- ecopcr | 5 | {bio} |
- embassy-domainatrix | 5 | {bio,cloud} |
- embassy-domalign | 5 | {cloud,bio} |
- hinge | 5 | {bio} |
- ipig | 5 | {bio} |
+ dicompyler | 5 | {oncology} |
+ embassy-domsearch | 5 | {cloud,bio} |
+ lagan | 5 | {bio} |
+ lamarc | 5 | {bio} |
libminc | 5 | {imaging-dev} |
- libncl | 5 | {bio} |
- mauve-aligner | 5 | {bio} |
+ librg-utils-perl | 5 | {bio} |
ngs-sdk | 5 | {bio-dev} |
- paraclu | 5 | {bio,cloud} |
- piler | 5 | {bio} |
- proalign | 5 | {bio,bio-phylogeny} |
- pscan-chip | 5 | {bio} |
- pymia | 5 | {imaging-dev} |
- rtax | 5 | {bio,cloud} |
+ perm | 5 | {cloud,bio} |
+ phast | 5 | {bio} |
+ phyutility | 5 | {bio,cloud} |
+ prime-phylo | 5 | {bio,cloud} |
+ quorum | 5 | {bio} |
+ runcircos-gui | 5 | {bio} |
+ saint | 5 | {bio} |
salmid | 5 | {bio} |
- seqsero | 5 | {bio} |
- soapaligner | 5 | {bio} |
- staden | 5 | {bio} |
- tracetuner | 5 | {bio} |
- yaha | 5 | {bio} |
- assemblytics | 4 | {bio} |
+ salmon | 5 | {covid-19,bio} |
+ sibsim4 | 5 | {cloud,bio} |
+ soapsnp | 5 | {bio} |
+ spread-phy | 5 | {bio,bio-phylogeny} |
+ arden | 4 | {bio,cloud} |
atropos | 4 | {bio} |
bamkit | 4 | {covid-19,bio} |
+ beast-mcmc | 4 | {bio-phylogeny,bio} |
+ biomaj3-cli | 4 | {cloud} |
+ bio-tradis | 4 | {bio,bio-dev} |
+ bitseq | 4 | {bio} |
+ brig | 4 | {bio} |
busco | 4 | {covid-19,bio} |
- clonalorigin | 4 | {bio} |
- cufflinks | 4 | {cloud,bio} |
- delly | 4 | {bio,covid-19} |
- estscan | 4 | {bio} |
- fastml | 4 | {bio} |
- fsm-lite | 4 | {bio} |
- gatb-core | 4 | {bio} |
+ canu | 4 | {bio} |
+ clonalframeml | 4 | {bio,covid-19} |
+ ecopcr | 4 | {bio} |
+ embassy-domainatrix | 4 | {bio,cloud} |
+ embassy-domalign | 4 | {cloud,bio} |
getdata | 4 | {bio} |
- jmodeltest | 4 | {bio,bio-phylogeny} |
+ hinge | 4 | {bio} |
+ ipig | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
- libpal-java | 4 | {bio-dev} |
- librdp-taxonomy-tree-java | 4 | {bio-dev} |
- mhap | 4 | {bio,bio-ngs} |
- microbegps | 4 | {bio} |
- placnet | 4 | {bio} |
- prottest | 4 | {bio,bio-phylogeny} |
- qcumber | 4 | {bio} |
- rambo-k | 4 | {bio} |
- rdp-alignment | 4 | {bio} |
- rdp-classifier | 4 | {bio} |
- samblaster | 4 | {covid-19,bio} |
- sga | 4 | {bio} |
- spaced | 4 | {bio} |
- sprai | 4 | {bio} |
- stacks | 4 | {bio} |
- suitename | 4 | {bio} |
- surankco | 4 | {bio} |
- zalign | 4 | {cloud,bio} |
- blasr | 3 | {bio,bio-ngs} |
- blimps | 3 | {bio} |
+ libncl | 4 | {bio} |
+ mauve-aligner | 4 | {bio} |
+ openslide | 4 | {imaging-dev} |
+ paraclu | 4 | {bio,cloud} |
+ piler | 4 | {bio} |
+ proalign | 4 | {bio,bio-phylogeny} |
+ pscan-chip | 4 | {bio} |
+ pymia | 4 | {imaging-dev} |
+ rtax | 4 | {bio,cloud} |
+ seqsero | 4 | {bio} |
+ soapaligner | 4 | {bio} |
+ staden | 4 | {bio} |
+ tracetuner | 4 | {bio} |
+ yaha | 4 | {bio} |
+ assemblytics | 3 | {bio} |
cat-bat | 3 | {covid-19,bio} |
- ghmm | 3 | {bio} |
- logol | 3 | {bio} |
- openslide | 3 | {imaging-dev} |
+ clonalorigin | 3 | {bio} |
+ cufflinks | 3 | {cloud,bio} |
+ delly | 3 | {bio,covid-19} |
+ estscan | 3 | {bio} |
+ fastml | 3 | {bio} |
+ fsm-lite | 3 | {bio} |
+ gatb-core | 3 | {bio} |
+ jmodeltest | 3 | {bio,bio-phylogeny} |
+ libpal-java | 3 | {bio-dev} |
+ librdp-taxonomy-tree-java | 3 | {bio-dev} |
+ mhap | 3 | {bio,bio-ngs} |
+ microbegps | 3 | {bio} |
orthanc-mysql | 3 | {imaging} |
orthanc-postgresql | 3 | {imaging} |
- pbdagcon | 3 | {bio} |
- segemehl | 3 | {bio} |
- sift | 3 | {bio} |
+ placnet | 3 | {bio} |
+ qcumber | 3 | {bio} |
+ rambo-k | 3 | {bio} |
+ rdp-alignment | 3 | {bio} |
+ rdp-classifier | 3 | {bio} |
+ samblaster | 3 | {covid-19,bio} |
+ sga | 3 | {bio} |
sight | 3 | {imaging} |
+ spaced | 3 | {bio} |
spaln | 3 | {bio,covid-19} |
- tvc | 3 | {bio} |
- varscan | 3 | {covid-19,bio} |
+ sprai | 3 | {bio} |
+ stacks | 3 | {bio} |
+ suitename | 3 | {bio} |
+ surankco | 3 | {bio} |
+ zalign | 3 | {cloud,bio} |
+ blasr | 2 | {bio,bio-ngs} |
+ blimps | 2 | {bio} |
dextractor | 2 | {bio,covid-19} |
emmax | 2 | {bio} |
+ ghmm | 2 | {bio} |
kmerresistance | 2 | {bio} |
- metaphlan2 | 2 | {bio} |
+ logol | 2 | {bio} |
nanosv | 2 | {bio,covid-19} |
nifticlib | 2 | {imaging-dev} |
- plasmidseeker | 2 | {bio} |
+ pbdagcon | 2 | {bio} |
sambamba | 2 | {bio} |
+ segemehl | 2 | {bio} |
+ sift | 2 | {bio} |
skesa | 2 | {bio} |
tophat-recondition | 2 | {covid-19,bio} |
trace2dbest | 2 | {bio} |
+ tvc | 2 | {bio} |
+ varscan | 2 | {covid-19,bio} |
yanagiba | 2 | {covid-19,bio} |
acedb | 1 | {cloud,bio} |
bbmap | 1 | {covid-19,bio} |
@@ -159,6 +155,7 @@ Last-Update: Mon, 22 Feb 2021 01:42:04 +0000
libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
+ metaphlan2 | 1 | {bio} |
ncbi-vdb | 1 | {bio-dev} |
opencfu | 1 | {laboratory} |
opensurgsim | 1 | {imaging-dev} |
@@ -169,10 +166,10 @@ Last-Update: Mon, 22 Feb 2021 01:42:04 +0000
pigx-rnaseq | 1 | {bio,covid-19} |
pilercr | 1 | {bio} |
pique | 1 | {bio} |
+ plasmidseeker | 1 | {bio} |
pplacer | 1 | {covid-19,bio,bio-phylogeny} |
python-bcbio-gff | 1 | {bio-dev} |
samtools-legacy | 1 | {bio-dev} |
- seq-gen | 1 | {bio} |
skewer | 1 | {bio} |
srf | 1 | {bio-dev} |
svim | 1 | {bio} |
@@ -225,11 +222,12 @@ Last-Update: Mon, 22 Feb 2021 01:42:04 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {bio,covid-19} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-seqcluster | 0 | {bio} |
q2-sample-classifier | 0 | {bio,bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
+ seq-gen | 0 | {bio} |
shovill | 0 | {covid-19,bio} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
@@ -240,5 +238,5 @@ Last-Update: Mon, 22 Feb 2021 01:42:04 +0000
xdffileio | 0 | {imaging-dev} |
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
-(270 rows)
+(268 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/243e6adb3e068197e0422551ece34a18285dd985
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/243e6adb3e068197e0422551ece34a18285dd985
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20210222/50297151/attachment-0001.htm>