Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
b4939464 by Andreas Tille at 2021-02-23T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,48 +1,47 @@
-Last-Update: Tue, 23 Feb 2021 01:42:03 +0000
+Last-Update: Tue, 23 Feb 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 184 | {imaging,covid-19} |
- orthanc | 97 | {practice,imaging,covid-19} |
- orthanc-wsi | 48 | {laboratory,practice,his,oncology,covid-19,imaging} |
- gdcm | 43 | {imaging-dev} |
- amide | 39 | {imaging} |
- dicom3tools | 33 | {imaging} |
- dicomscope | 28 | {imaging} |
- htsjdk | 22 | {bio-dev} |
- gdcm | 20 | {imaging,covid-19} |
+ dcmtk | 185 | {covid-19,imaging} |
+ orthanc | 98 | {practice,covid-19,imaging} |
+ orthanc-wsi | 49 | {his,imaging,practice,laboratory,covid-19,oncology} |
+ gdcm | 42 | {imaging-dev} |
+ amide | 40 | {imaging} |
+ dicom3tools | 34 | {imaging} |
+ dicomscope | 29 | {imaging} |
+ htsjdk | 23 | {bio-dev} |
+ gdcm | 20 | {covid-19,imaging} |
dcm2niix | 18 | {imaging} |
- odin | 18 | {imaging,imaging-dev} |
- dicomnifti | 17 | {imaging} |
- gnumed-server | 15 | {covid-19,practice} |
- invesalius | 15 | {imaging} |
- minc-tools | 14 | {imaging} |
+ dicomnifti | 18 | {imaging} |
+ odin | 17 | {imaging-dev,imaging} |
+ invesalius | 16 | {imaging} |
+ gnumed-server | 15 | {practice,covid-19} |
+ minc-tools | 15 | {imaging} |
+ nifticlib | 14 | {imaging} |
plastimatch | 14 | {imaging} |
- nifticlib | 13 | {imaging} |
- gdcm | 11 | {imaging-dev} |
+ gdcm | 12 | {imaging-dev} |
ngs-sdk | 11 | {bio-dev} |
pixelmed | 11 | {imaging} |
vtk-dicom | 11 | {imaging} |
adun.app | 10 | {bio} |
openslide | 10 | {imaging} |
+ nifti2dicom | 9 | {imaging} |
orthanc-webviewer | 9 | {imaging} |
insighttoolkit4 | 8 | {imaging-dev} |
king | 8 | {imaging,typesetting} |
melting | 8 | {bio,cloud} |
mia | 8 | {imaging} |
- multiqc | 8 | {covid-19,bio} |
- nifti2dicom | 8 | {imaging} |
+ multiqc | 8 | {bio,covid-19} |
elastix | 7 | {imaging} |
jebl2 | 7 | {bio-dev} |
jellyfish1 | 7 | {bio} |
biojava-live | 6 | {bio-dev} |
ea-utils | 6 | {bio} |
- fastlink | 6 | {bio,cloud} |
libsbml | 6 | {bio-dev} |
ngs-sdk | 6 | {bio-dev} |
obitools | 6 | {bio} |
orthanc-dicomweb | 6 | {covid-19,imaging} |
- treeview | 6 | {bio-phylogeny,bio} |
+ treeview | 6 | {bio,bio-phylogeny} |
anfo | 5 | {cloud,bio} |
bart-view | 5 | {imaging} |
dicompyler | 5 | {oncology} |
@@ -60,8 +59,8 @@ Last-Update: Tue, 23 Feb 2021 01:42:03 +0000
runcircos-gui | 5 | {bio} |
saint | 5 | {bio} |
salmid | 5 | {bio} |
- salmon | 5 | {covid-19,bio} |
- sibsim4 | 5 | {cloud,bio} |
+ salmon | 5 | {bio,covid-19} |
+ sibsim4 | 5 | {bio,cloud} |
soapsnp | 5 | {bio} |
spread-phy | 5 | {bio,bio-phylogeny} |
arden | 4 | {bio,cloud} |
@@ -74,10 +73,10 @@ Last-Update: Tue, 23 Feb 2021 01:42:03 +0000
brig | 4 | {bio} |
busco | 4 | {covid-19,bio} |
canu | 4 | {bio} |
- clonalframeml | 4 | {bio,covid-19} |
+ clonalframeml | 4 | {covid-19,bio} |
ecopcr | 4 | {bio} |
- embassy-domainatrix | 4 | {bio,cloud} |
- embassy-domalign | 4 | {cloud,bio} |
+ embassy-domainatrix | 4 | {cloud,bio} |
+ embassy-domalign | 4 | {bio,cloud} |
getdata | 4 | {bio} |
hinge | 4 | {bio} |
ipig | 4 | {bio} |
@@ -87,20 +86,20 @@ Last-Update: Tue, 23 Feb 2021 01:42:03 +0000
openslide | 4 | {imaging-dev} |
paraclu | 4 | {bio,cloud} |
piler | 4 | {bio} |
- proalign | 4 | {bio,bio-phylogeny} |
+ proalign | 4 | {bio-phylogeny,bio} |
pscan-chip | 4 | {bio} |
pymia | 4 | {imaging-dev} |
- rtax | 4 | {bio,cloud} |
+ rtax | 4 | {cloud,bio} |
seqsero | 4 | {bio} |
soapaligner | 4 | {bio} |
staden | 4 | {bio} |
tracetuner | 4 | {bio} |
yaha | 4 | {bio} |
assemblytics | 3 | {bio} |
- cat-bat | 3 | {covid-19,bio} |
+ cat-bat | 3 | {bio,covid-19} |
clonalorigin | 3 | {bio} |
- cufflinks | 3 | {cloud,bio} |
- delly | 3 | {bio,covid-19} |
+ cufflinks | 3 | {bio,cloud} |
+ delly | 3 | {covid-19,bio} |
estscan | 3 | {bio} |
fastml | 3 | {bio} |
fsm-lite | 3 | {bio} |
@@ -117,7 +116,7 @@ Last-Update: Tue, 23 Feb 2021 01:42:03 +0000
rambo-k | 3 | {bio} |
rdp-alignment | 3 | {bio} |
rdp-classifier | 3 | {bio} |
- samblaster | 3 | {covid-19,bio} |
+ samblaster | 3 | {bio,covid-19} |
sga | 3 | {bio} |
sight | 3 | {imaging} |
spaced | 3 | {bio} |
@@ -126,7 +125,7 @@ Last-Update: Tue, 23 Feb 2021 01:42:03 +0000
stacks | 3 | {bio} |
suitename | 3 | {bio} |
surankco | 3 | {bio} |
- zalign | 3 | {cloud,bio} |
+ zalign | 3 | {bio,cloud} |
blasr | 2 | {bio,bio-ngs} |
blimps | 2 | {bio} |
dextractor | 2 | {bio,covid-19} |
@@ -134,7 +133,7 @@ Last-Update: Tue, 23 Feb 2021 01:42:03 +0000
ghmm | 2 | {bio} |
kmerresistance | 2 | {bio} |
logol | 2 | {bio} |
- nanosv | 2 | {bio,covid-19} |
+ nanosv | 2 | {covid-19,bio} |
nifticlib | 2 | {imaging-dev} |
pbdagcon | 2 | {bio} |
sambamba | 2 | {bio} |
@@ -144,11 +143,11 @@ Last-Update: Tue, 23 Feb 2021 01:42:03 +0000
tophat-recondition | 2 | {covid-19,bio} |
trace2dbest | 2 | {bio} |
tvc | 2 | {bio} |
- varscan | 2 | {covid-19,bio} |
+ varscan | 2 | {bio,covid-19} |
yanagiba | 2 | {covid-19,bio} |
- acedb | 1 | {cloud,bio} |
- bbmap | 1 | {covid-19,bio} |
- bustools | 1 | {bio,covid-19} |
+ acedb | 1 | {bio,cloud} |
+ bbmap | 1 | {bio,covid-19} |
+ bustools | 1 | {covid-19,bio} |
ctn | 1 | {imaging-dev} |
emboss-explorer | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
@@ -160,14 +159,14 @@ Last-Update: Tue, 23 Feb 2021 01:42:03 +0000
opencfu | 1 | {laboratory} |
opensurgsim | 1 | {imaging-dev} |
orthanc-gdcm | 1 | {imaging} |
- oscar | 1 | {data,tools,practice} |
+ oscar | 1 | {data,practice,tools} |
papyrus | 1 | {imaging-dev} |
parallel-fastq-dump | 1 | {covid-19} |
pigx-rnaseq | 1 | {bio,covid-19} |
pilercr | 1 | {bio} |
pique | 1 | {bio} |
plasmidseeker | 1 | {bio} |
- pplacer | 1 | {covid-19,bio,bio-phylogeny} |
+ pplacer | 1 | {covid-19,bio-phylogeny,bio} |
python-bcbio-gff | 1 | {bio-dev} |
samtools-legacy | 1 | {bio-dev} |
skewer | 1 | {bio} |
@@ -201,7 +200,7 @@ Last-Update: Tue, 23 Feb 2021 01:42:03 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {imaging-dev,covid-19} |
+ libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {bio-dev,covid-19} |
libmems | 0 | {bio-dev} |
@@ -216,15 +215,15 @@ Last-Update: Tue, 23 Feb 2021 01:42:03 +0000
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {bio-dev,covid-19} |
+ milib | 0 | {covid-19,bio-dev} |
nifticlib | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {bio,covid-19} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
- q2-sample-classifier | 0 | {bio,bio-dev} |
+ q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
@@ -238,5 +237,5 @@ Last-Update: Tue, 23 Feb 2021 01:42:03 +0000
xdffileio | 0 | {imaging-dev} |
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
-(268 rows)
+(267 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b4939464e6fc5f54f149f01c76ae22a19f71638e
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b4939464e6fc5f54f149f01c76ae22a19f71638e
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