Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
052cc526 by Andreas Tille at 2021-02-24T13:42:18+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,60 +1,60 @@
-Last-Update: Wed, 24 Feb 2021 01:42:04 +0000
+Last-Update: Wed, 24 Feb 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 185 | {covid-19,imaging} |
orthanc | 98 | {practice,covid-19,imaging} |
orthanc-wsi | 49 | {his,imaging,practice,laboratory,covid-19,oncology} |
- gdcm | 42 | {imaging-dev} |
- amide | 40 | {imaging} |
- dicom3tools | 34 | {imaging} |
+ gdcm | 44 | {imaging-dev} |
+ amide | 42 | {imaging} |
+ dicom3tools | 33 | {imaging} |
dicomscope | 29 | {imaging} |
- htsjdk | 23 | {bio-dev} |
- gdcm | 20 | {covid-19,imaging} |
- dcm2niix | 18 | {imaging} |
- dicomnifti | 18 | {imaging} |
+ htsjdk | 24 | {bio-dev} |
+ dcm2niix | 19 | {imaging} |
+ dicomnifti | 19 | {imaging} |
+ gdcm | 19 | {covid-19,imaging} |
odin | 17 | {imaging-dev,imaging} |
invesalius | 16 | {imaging} |
+ nifticlib | 16 | {imaging} |
gnumed-server | 15 | {practice,covid-19} |
minc-tools | 15 | {imaging} |
- nifticlib | 14 | {imaging} |
plastimatch | 14 | {imaging} |
- gdcm | 12 | {imaging-dev} |
+ gdcm | 13 | {imaging-dev} |
ngs-sdk | 11 | {bio-dev} |
pixelmed | 11 | {imaging} |
vtk-dicom | 11 | {imaging} |
adun.app | 10 | {bio} |
+ nifti2dicom | 10 | {imaging} |
openslide | 10 | {imaging} |
- nifti2dicom | 9 | {imaging} |
orthanc-webviewer | 9 | {imaging} |
- insighttoolkit4 | 8 | {imaging-dev} |
king | 8 | {imaging,typesetting} |
melting | 8 | {bio,cloud} |
mia | 8 | {imaging} |
multiqc | 8 | {bio,covid-19} |
elastix | 7 | {imaging} |
+ insighttoolkit4 | 7 | {imaging-dev} |
jebl2 | 7 | {bio-dev} |
jellyfish1 | 7 | {bio} |
biojava-live | 6 | {bio-dev} |
+ dicompyler | 6 | {oncology} |
ea-utils | 6 | {bio} |
libsbml | 6 | {bio-dev} |
ngs-sdk | 6 | {bio-dev} |
- obitools | 6 | {bio} |
orthanc-dicomweb | 6 | {covid-19,imaging} |
treeview | 6 | {bio,bio-phylogeny} |
anfo | 5 | {cloud,bio} |
bart-view | 5 | {imaging} |
- dicompyler | 5 | {oncology} |
embassy-domsearch | 5 | {cloud,bio} |
- lagan | 5 | {bio} |
lamarc | 5 | {bio} |
libminc | 5 | {imaging-dev} |
librg-utils-perl | 5 | {bio} |
ngs-sdk | 5 | {bio-dev} |
+ obitools | 5 | {bio} |
perm | 5 | {cloud,bio} |
phast | 5 | {bio} |
phyutility | 5 | {bio,cloud} |
prime-phylo | 5 | {bio,cloud} |
+ pymia | 5 | {imaging-dev} |
quorum | 5 | {bio} |
runcircos-gui | 5 | {bio} |
saint | 5 | {bio} |
@@ -64,22 +64,21 @@ Last-Update: Wed, 24 Feb 2021 01:42:04 +0000
soapsnp | 5 | {bio} |
spread-phy | 5 | {bio,bio-phylogeny} |
arden | 4 | {bio,cloud} |
- atropos | 4 | {bio} |
- bamkit | 4 | {covid-19,bio} |
beast-mcmc | 4 | {bio-phylogeny,bio} |
- biomaj3-cli | 4 | {cloud} |
bio-tradis | 4 | {bio,bio-dev} |
bitseq | 4 | {bio} |
brig | 4 | {bio} |
busco | 4 | {covid-19,bio} |
canu | 4 | {bio} |
clonalframeml | 4 | {covid-19,bio} |
+ delly | 4 | {covid-19,bio} |
ecopcr | 4 | {bio} |
embassy-domainatrix | 4 | {cloud,bio} |
embassy-domalign | 4 | {bio,cloud} |
getdata | 4 | {bio} |
hinge | 4 | {bio} |
ipig | 4 | {bio} |
+ lagan | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
libncl | 4 | {bio} |
mauve-aligner | 4 | {bio} |
@@ -88,18 +87,16 @@ Last-Update: Wed, 24 Feb 2021 01:42:04 +0000
piler | 4 | {bio} |
proalign | 4 | {bio-phylogeny,bio} |
pscan-chip | 4 | {bio} |
- pymia | 4 | {imaging-dev} |
rtax | 4 | {cloud,bio} |
seqsero | 4 | {bio} |
soapaligner | 4 | {bio} |
+ stacks | 4 | {bio} |
staden | 4 | {bio} |
tracetuner | 4 | {bio} |
- yaha | 4 | {bio} |
assemblytics | 3 | {bio} |
- cat-bat | 3 | {bio,covid-19} |
+ atropos | 3 | {bio} |
clonalorigin | 3 | {bio} |
cufflinks | 3 | {bio,cloud} |
- delly | 3 | {covid-19,bio} |
estscan | 3 | {bio} |
fastml | 3 | {bio} |
fsm-lite | 3 | {bio} |
@@ -120,16 +117,16 @@ Last-Update: Wed, 24 Feb 2021 01:42:04 +0000
sga | 3 | {bio} |
sight | 3 | {imaging} |
spaced | 3 | {bio} |
- spaln | 3 | {bio,covid-19} |
sprai | 3 | {bio} |
- stacks | 3 | {bio} |
suitename | 3 | {bio} |
surankco | 3 | {bio} |
+ yaha | 3 | {bio} |
zalign | 3 | {bio,cloud} |
+ bamkit | 2 | {covid-19,bio} |
+ biomaj3-cli | 2 | {cloud} |
blasr | 2 | {bio,bio-ngs} |
blimps | 2 | {bio} |
- dextractor | 2 | {bio,covid-19} |
- emmax | 2 | {bio} |
+ cat-bat | 2 | {bio,covid-19} |
ghmm | 2 | {bio} |
kmerresistance | 2 | {bio} |
logol | 2 | {bio} |
@@ -137,19 +134,18 @@ Last-Update: Wed, 24 Feb 2021 01:42:04 +0000
nifticlib | 2 | {imaging-dev} |
pbdagcon | 2 | {bio} |
sambamba | 2 | {bio} |
- segemehl | 2 | {bio} |
sift | 2 | {bio} |
skesa | 2 | {bio} |
- tophat-recondition | 2 | {covid-19,bio} |
+ spaln | 2 | {bio,covid-19} |
trace2dbest | 2 | {bio} |
tvc | 2 | {bio} |
varscan | 2 | {bio,covid-19} |
- yanagiba | 2 | {covid-19,bio} |
acedb | 1 | {bio,cloud} |
bbmap | 1 | {bio,covid-19} |
bustools | 1 | {covid-19,bio} |
ctn | 1 | {imaging-dev} |
emboss-explorer | 1 | {bio} |
+ emmax | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
@@ -169,16 +165,20 @@ Last-Update: Wed, 24 Feb 2021 01:42:04 +0000
pplacer | 1 | {covid-19,bio-phylogeny,bio} |
python-bcbio-gff | 1 | {bio-dev} |
samtools-legacy | 1 | {bio-dev} |
+ segemehl | 1 | {bio} |
skewer | 1 | {bio} |
srf | 1 | {bio-dev} |
svim | 1 | {bio} |
thesias | 1 | {bio,covid-19} |
+ tophat-recondition | 1 | {covid-19,bio} |
varna | 1 | {bio} |
+ yanagiba | 1 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
+ dextractor | 0 | {bio,covid-19} |
eegdev | 0 | {imaging-dev} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/052cc52662458285201e36be553191ca67274c2c
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/052cc52662458285201e36be553191ca67274c2c
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