Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
24622150 by Andreas Tille at 2021-02-25T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,61 +1,70 @@
-Last-Update: Thu, 25 Feb 2021 01:42:03 +0000
+Last-Update: Thu, 25 Feb 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 185 | {covid-19,imaging} |
- orthanc | 98 | {practice,covid-19,imaging} |
- orthanc-wsi | 49 | {his,imaging,practice,laboratory,covid-19,oncology} |
- gdcm | 44 | {imaging-dev} |
- amide | 42 | {imaging} |
+ orthanc | 97 | {practice,covid-19,imaging} |
+ orthanc-wsi | 48 | {his,imaging,practice,laboratory,covid-19,oncology} |
+ amide | 43 | {imaging} |
+ gdcm | 43 | {imaging-dev} |
dicom3tools | 33 | {imaging} |
- dicomscope | 29 | {imaging} |
- htsjdk | 24 | {bio-dev} |
+ dicomscope | 28 | {imaging} |
+ htsjdk | 23 | {bio-dev} |
dcm2niix | 19 | {imaging} |
dicomnifti | 19 | {imaging} |
- gdcm | 19 | {covid-19,imaging} |
+ gdcm | 18 | {covid-19,imaging} |
+ nifticlib | 18 | {imaging} |
odin | 17 | {imaging-dev,imaging} |
invesalius | 16 | {imaging} |
- nifticlib | 16 | {imaging} |
- gnumed-server | 15 | {practice,covid-19} |
- minc-tools | 15 | {imaging} |
+ minc-tools | 16 | {imaging} |
+ gnumed-server | 14 | {practice,covid-19} |
plastimatch | 14 | {imaging} |
gdcm | 13 | {imaging-dev} |
+ pixelmed | 12 | {imaging} |
ngs-sdk | 11 | {bio-dev} |
- pixelmed | 11 | {imaging} |
vtk-dicom | 11 | {imaging} |
adun.app | 10 | {bio} |
nifti2dicom | 10 | {imaging} |
openslide | 10 | {imaging} |
+ mia | 9 | {imaging} |
orthanc-webviewer | 9 | {imaging} |
+ insighttoolkit4 | 8 | {imaging-dev} |
+ jebl2 | 8 | {bio-dev} |
+ jellyfish1 | 8 | {bio} |
king | 8 | {imaging,typesetting} |
melting | 8 | {bio,cloud} |
- mia | 8 | {imaging} |
multiqc | 8 | {bio,covid-19} |
+ biojava-live | 7 | {bio-dev} |
+ ea-utils | 7 | {bio} |
elastix | 7 | {imaging} |
- insighttoolkit4 | 7 | {imaging-dev} |
- jebl2 | 7 | {bio-dev} |
- jellyfish1 | 7 | {bio} |
- biojava-live | 6 | {bio-dev} |
+ anfo | 6 | {cloud,bio} |
dicompyler | 6 | {oncology} |
- ea-utils | 6 | {bio} |
libsbml | 6 | {bio-dev} |
ngs-sdk | 6 | {bio-dev} |
orthanc-dicomweb | 6 | {covid-19,imaging} |
+ phast | 6 | {bio} |
+ quorum | 6 | {bio} |
treeview | 6 | {bio,bio-phylogeny} |
- anfo | 5 | {cloud,bio} |
+ arden | 5 | {bio,cloud} |
bart-view | 5 | {imaging} |
+ beast-mcmc | 5 | {bio-phylogeny,bio} |
+ bio-tradis | 5 | {bio,bio-dev} |
+ bitseq | 5 | {bio} |
+ ecopcr | 5 | {bio} |
+ embassy-domainatrix | 5 | {cloud,bio} |
+ embassy-domalign | 5 | {bio,cloud} |
embassy-domsearch | 5 | {cloud,bio} |
+ lagan | 5 | {bio} |
lamarc | 5 | {bio} |
libminc | 5 | {imaging-dev} |
+ libncl | 5 | {bio} |
librg-utils-perl | 5 | {bio} |
ngs-sdk | 5 | {bio-dev} |
obitools | 5 | {bio} |
perm | 5 | {cloud,bio} |
- phast | 5 | {bio} |
phyutility | 5 | {bio,cloud} |
prime-phylo | 5 | {bio,cloud} |
pymia | 5 | {imaging-dev} |
- quorum | 5 | {bio} |
runcircos-gui | 5 | {bio} |
saint | 5 | {bio} |
salmid | 5 | {bio} |
@@ -63,24 +72,20 @@ Last-Update: Thu, 25 Feb 2021 01:42:03 +0000
sibsim4 | 5 | {bio,cloud} |
soapsnp | 5 | {bio} |
spread-phy | 5 | {bio,bio-phylogeny} |
- arden | 4 | {bio,cloud} |
- beast-mcmc | 4 | {bio-phylogeny,bio} |
- bio-tradis | 4 | {bio,bio-dev} |
- bitseq | 4 | {bio} |
+ assemblytics | 4 | {bio} |
brig | 4 | {bio} |
busco | 4 | {covid-19,bio} |
canu | 4 | {bio} |
clonalframeml | 4 | {covid-19,bio} |
- delly | 4 | {covid-19,bio} |
- ecopcr | 4 | {bio} |
- embassy-domainatrix | 4 | {cloud,bio} |
- embassy-domalign | 4 | {bio,cloud} |
+ clonalorigin | 4 | {bio} |
+ estscan | 4 | {bio} |
+ fsm-lite | 4 | {bio} |
getdata | 4 | {bio} |
hinge | 4 | {bio} |
ipig | 4 | {bio} |
- lagan | 4 | {bio} |
+ jmodeltest | 4 | {bio,bio-phylogeny} |
libdivsufsort | 4 | {bio-dev} |
- libncl | 4 | {bio} |
+ libpal-java | 4 | {bio-dev} |
mauve-aligner | 4 | {bio} |
openslide | 4 | {imaging-dev} |
paraclu | 4 | {bio,cloud} |
@@ -88,57 +93,52 @@ Last-Update: Thu, 25 Feb 2021 01:42:03 +0000
proalign | 4 | {bio-phylogeny,bio} |
pscan-chip | 4 | {bio} |
rtax | 4 | {cloud,bio} |
+ samblaster | 4 | {bio,covid-19} |
seqsero | 4 | {bio} |
soapaligner | 4 | {bio} |
stacks | 4 | {bio} |
staden | 4 | {bio} |
tracetuner | 4 | {bio} |
- assemblytics | 3 | {bio} |
+ yaha | 4 | {bio} |
+ zalign | 4 | {bio,cloud} |
atropos | 3 | {bio} |
- clonalorigin | 3 | {bio} |
+ biomaj3-cli | 3 | {cloud} |
+ blasr | 3 | {bio,bio-ngs} |
cufflinks | 3 | {bio,cloud} |
- estscan | 3 | {bio} |
+ delly | 3 | {covid-19,bio} |
fastml | 3 | {bio} |
- fsm-lite | 3 | {bio} |
gatb-core | 3 | {bio} |
- jmodeltest | 3 | {bio,bio-phylogeny} |
- libpal-java | 3 | {bio-dev} |
+ ghmm | 3 | {bio} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
mhap | 3 | {bio,bio-ngs} |
microbegps | 3 | {bio} |
- orthanc-mysql | 3 | {imaging} |
orthanc-postgresql | 3 | {imaging} |
placnet | 3 | {bio} |
qcumber | 3 | {bio} |
rambo-k | 3 | {bio} |
rdp-alignment | 3 | {bio} |
rdp-classifier | 3 | {bio} |
- samblaster | 3 | {bio,covid-19} |
sga | 3 | {bio} |
sight | 3 | {imaging} |
spaced | 3 | {bio} |
sprai | 3 | {bio} |
suitename | 3 | {bio} |
surankco | 3 | {bio} |
- yaha | 3 | {bio} |
- zalign | 3 | {bio,cloud} |
+ tvc | 3 | {bio} |
bamkit | 2 | {covid-19,bio} |
- biomaj3-cli | 2 | {cloud} |
- blasr | 2 | {bio,bio-ngs} |
blimps | 2 | {bio} |
cat-bat | 2 | {bio,covid-19} |
- ghmm | 2 | {bio} |
kmerresistance | 2 | {bio} |
logol | 2 | {bio} |
nanosv | 2 | {covid-19,bio} |
nifticlib | 2 | {imaging-dev} |
+ orthanc-mysql | 2 | {imaging} |
pbdagcon | 2 | {bio} |
sambamba | 2 | {bio} |
sift | 2 | {bio} |
skesa | 2 | {bio} |
spaln | 2 | {bio,covid-19} |
trace2dbest | 2 | {bio} |
- tvc | 2 | {bio} |
varscan | 2 | {bio,covid-19} |
acedb | 1 | {bio,cloud} |
bbmap | 1 | {bio,covid-19} |
@@ -216,6 +216,7 @@ Last-Update: Thu, 25 Feb 2021 01:42:03 +0000
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
milib | 0 | {covid-19,bio-dev} |
+ mssstest | 0 | {tools} |
nifticlib | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
@@ -235,7 +236,6 @@ Last-Update: Thu, 25 Feb 2021 01:42:03 +0000
vienna-rna | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
- mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
(267 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/24622150d4c1c78ae2e83eaf8ec5944839d2e9d0
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/24622150d4c1c78ae2e83eaf8ec5944839d2e9d0
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