[med-svn] [Git][med-team/repeatmasker][master] 13 commits: routine-update: New upstream version
Andreas Tille
gitlab at salsa.debian.org
Fri Feb 26 21:16:14 GMT 2021
Andreas Tille pushed to branch master at Debian Med / repeatmasker
Commits:
6abf6ca5 by Andreas Tille at 2021-02-26T21:39:43+01:00
routine-update: New upstream version
- - - - -
0823c5e8 by Andreas Tille at 2021-02-26T21:41:57+01:00
New upstream version 4.0.7
- - - - -
ab847ebf by Andreas Tille at 2021-02-26T22:08:14+01:00
Update upstream source from tag 'upstream/4.0.7'
Update to upstream version '4.0.7'
with Debian dir 2c3eb5d4f7f186bde36cea89acb91e10e2837c75
- - - - -
55089a4d by Andreas Tille at 2021-02-26T22:09:40+01:00
routine-update: Standards-Version: 4.5.1
- - - - -
30ceb3b6 by Andreas Tille at 2021-02-26T22:09:40+01:00
routine-update: debhelper-compat 13
- - - - -
f17443ec by Andreas Tille at 2021-02-26T22:09:42+01:00
routine-update: Point Vcs fields to salsa.debian.org
- - - - -
f9732ce8 by Andreas Tille at 2021-02-26T22:09:43+01:00
routine-update: Remove trailing whitespace in debian/copyright
- - - - -
885e870e by Andreas Tille at 2021-02-26T22:09:43+01:00
routine-update: Remove trailing whitespace in debian/rules
- - - - -
94eb7f82 by Andreas Tille at 2021-02-26T22:09:43+01:00
routine-update: Add salsa-ci file
- - - - -
add1e2d2 by Andreas Tille at 2021-02-26T22:09:43+01:00
routine-update: Rules-Requires-Root: no
- - - - -
6214abdc by Andreas Tille at 2021-02-26T22:10:23+01:00
Use secure URI in Homepage field.
Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html
- - - - -
c7ec4f78 by Andreas Tille at 2021-02-26T22:14:21+01:00
Depends trf
- - - - -
06c4f527 by Andreas Tille at 2021-02-26T22:15:55+01:00
Add TODO
- - - - -
6 changed files:
- debian/changelog
- − debian/compat
- debian/control
- debian/copyright
- debian/rules
- + debian/salsa-ci.yml
Changes:
=====================================
debian/changelog
=====================================
@@ -1,8 +1,14 @@
-repeatmasker (4.0.6-1) UNRELEASED; urgency=medium
+repeatmasker (4.0.7-1) UNRELEASED; urgency=medium
* Initial release (Closes: #???)
- TODO: Needs http://tandem.bu.edu/trf/trf.html (source code not available)
- * Moved packaging from SVN to Git
- * Standards-Version: 4.1.2
+ TODO: Build time test results in endless loop
+
+ **TRF PROGRAM**
- -- Andreas Tille <tille at debian.org> Tue, 02 Feb 2016 15:50:26 +0100
+ This is the full path to the TRF program.
+ This is now used by RepeatMasker to mask simple repeats.
+
+ Enter path [ ]: This is a required parameter.
+ <PRESS ENTER TO CONTINUE, CTRL-C TO BREAK>
+
+ -- Andreas Tille <tille at debian.org> Fri, 26 Feb 2021 21:39:43 +0100
=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-10
=====================================
debian/control
=====================================
@@ -1,17 +1,20 @@
Source: repeatmasker
-Section: science
-Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 10)
-Standards-Version: 4.1.2
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/repeatmasker.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/repeatmasker.git
-Homepage: http://www.repeatmasker.org/
+Section: science
+Priority: optional
+Build-Depends: debhelper-compat (= 13)
+Standards-Version: 4.5.1
+Vcs-Browser: https://salsa.debian.org/med-team/repeatmasker
+Vcs-Git: https://salsa.debian.org/med-team/repeatmasker.git
+Homepage: https://www.repeatmasker.org/
+Rules-Requires-Root: no
Package: repeatmasker
Architecture: any
-Depends: ${perl:Depends}, ${misc:Depends}
+Depends: ${perl:Depends},
+ ${misc:Depends},
+ trf
Description: screen DNA sequences for interspersed repeats
RepeatMasker is a program that screens DNA sequences for interspersed
repeats and low complexity DNA sequences. The output of the program is
=====================================
debian/copyright
=====================================
@@ -16,19 +16,19 @@ License: OpenSoftwareLicense-2.1
This Open Software License (the "License") applies to any original work
of authorship (the "Original Work") whose owner (the "Licensor") has
placed the following notice immediately following the copyright notice
- for the Original Work: Licensed under the Open Software License version 2.1
+ for the Original Work: Licensed under the Open Software License version 2.1
.
1) Grant of Copyright License. Licensor hereby grants You a world-wide,
royalty-free, non-exclusive, perpetual, sublicenseable license to do
the following:
.
- to reproduce the Original Work in copies;
- to prepare derivative works ("Derivative Works") based upon the Original Work;
- to distribute copies of the Original Work and Derivative Works to the
+ to reproduce the Original Work in copies;
+ to prepare derivative works ("Derivative Works") based upon the Original Work;
+ to distribute copies of the Original Work and Derivative Works to the
public, with the proviso that copies of Original Work or Derivative Works
- that You distribute shall be licensed under the Open Software License;
- to perform the Original Work publicly; and
- to display the Original Work publicly.
+ that You distribute shall be licensed under the Open Software License;
+ to perform the Original Work publicly; and
+ to display the Original Work publicly.
.
2) Grant of Patent License. Licensor hereby grants You a world-wide,
royalty-free, non-exclusive, perpetual, sublicenseable license, under
@@ -143,7 +143,7 @@ License: OpenSoftwareLicense-2.1
or after its termination shall be subject to the requirements and
penalties of the U.S. Copyright Act, 17 U.S.C. § 101 et seq., the
equivalent laws of other countries, and international treaty. This
- section shall survive the termination of this License.
+ section shall survive the termination of this License.
.
12) Attorneys Fees. In any action to enforce the terms of this License or
seeking damages relating thereto, the prevailing party shall be entitled
=====================================
debian/rules
=====================================
@@ -2,4 +2,4 @@
#export DH_VERBOSE = 1
%:
- dh $@
+ dh $@
=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
View it on GitLab: https://salsa.debian.org/med-team/repeatmasker/-/compare/86855c47192834b51124e0a6f26f8cadb157c333...06c4f5275aa08cf7c600d8bab35af3da68782c44
--
View it on GitLab: https://salsa.debian.org/med-team/repeatmasker/-/compare/86855c47192834b51124e0a6f26f8cadb157c333...06c4f5275aa08cf7c600d8bab35af3da68782c44
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