[med-svn] [Git][med-team/spades][master] 3 commits: Build-Deps: does not build python extensions; replace python3-dev with python3-all

[Juhani Numminen]

Juhani Numminen pushed to branch master at Debian Med / spades


Commits:
aed48f25 by Juhani Numminen at 2021-02-27T13:40:31+02:00
Build-Deps: does not build python extensions; replace python3-dev with python3-all

- - - - -
ba3de0b2 by Juhani Numminen at 2021-02-27T13:42:33+02:00
Depends: remove explicit shared lib packages which are handled as ${shlibs:Depends}

- - - - -
2ce1f0a2 by Juhani Numminen at 2021-02-27T14:49:54+02:00
Update changelog

- - - - -


2 changed files:

- debian/changelog
- debian/control


Changes:

=====================================
debian/changelog
=====================================
@@ -32,16 +32,17 @@ spades (3.15.1+dfsg-1) UNRELEASED; urgency=medium
   * Simplify debian/rules: do not attempt to run as-installed tests before
     installation
   * Install scripts under FHS-compliant path /usr/libexec/spades/
+    - Adjust 0118_adjust_spades_home_again.patch
   * Add patches to make the test suite runnable
   * d/links: Add new binary coronaspades(.py)
-  * Adjust 0118_adjust_spades_home_again.patch
   * Remove unused adapt_to_debian_pathes.patch
   * Add d/clean for test artifacts
-
-  FIXME: Autopkgtests show that this way of frankenstein linking does not
-         produce working results
   * Add disable_local_convertutf.patch: to cover for dfsg-removed ConvertUTF.o,
     link against system's LLVMSupport.a
+  * Build-Deps: does not build python extensions; s/python3-dev/python3-all/
+  * Depends: remove explicit shared libs (handled as ${shlibs:Depends})
+  * Use vendored boost which has local modifications to avoid include problems
+    during program use.
 
   [ Étienne Mollier ]
   * Add fix-sigill-on-non-popcnt-cpus.patch; fixes baseline violation.


=====================================
debian/control
=====================================
@@ -9,7 +9,7 @@ Priority: optional
 Build-Depends: debhelper-compat (= 13),
                dh-python,
                cmake,
-               python3-dev,
+               python3-all,
                zlib1g-dev,
                libbz2-dev,
                libbam-dev,
@@ -42,9 +42,7 @@ Depends: ${shlibs:Depends},
          python3-yaml,
          bwa,
          bamtools,
-         samtools,
-         libnlopt0,
-         libssw0
+         samtools
 Description: genome assembler for single-cell and isolates data sets
  The SPAdes – St. Petersburg genome assembler is intended for both
  standard isolates and single-cell MDA bacteria assemblies.  It works



View it on GitLab: https://salsa.debian.org/med-team/spades/-/compare/16312b835188d25109564d1603f4e4d1e4150a45...2ce1f0a2593da8233fd103ebfe80176d431ec1d0

-- 
View it on GitLab: https://salsa.debian.org/med-team/spades/-/compare/16312b835188d25109564d1603f4e4d1e4150a45...2ce1f0a2593da8233fd103ebfe80176d431ec1d0
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