Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
3c4f6c40 by Andreas Tille at 2021-02-27T13:42:19+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,110 +1,112 @@
-Last-Update: Sat, 27 Feb 2021 01:42:03 +0000
+Last-Update: Sat, 27 Feb 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 185 | {covid-19,imaging} |
- orthanc | 97 | {practice,covid-19,imaging} |
- orthanc-wsi | 48 | {his,imaging,practice,laboratory,covid-19,oncology} |
+ dcmtk | 186 | {imaging,covid-19} |
+ orthanc | 98 | {covid-19,imaging,practice} |
+ orthanc-wsi | 47 | {imaging,covid-19,laboratory,his,oncology,practice} |
amide | 44 | {imaging} |
- gdcm | 43 | {imaging-dev} |
- dicom3tools | 35 | {imaging} |
+ gdcm | 44 | {imaging-dev} |
+ dicom3tools | 36 | {imaging} |
dicomscope | 30 | {imaging} |
- htsjdk | 24 | {bio-dev} |
+ htsjdk | 25 | {bio-dev} |
dcm2niix | 23 | {imaging} |
+ nifticlib | 21 | {imaging} |
dicomnifti | 20 | {imaging} |
- nifticlib | 20 | {imaging} |
- odin | 19 | {imaging-dev,imaging} |
+ odin | 19 | {imaging,imaging-dev} |
+ minc-tools | 18 | {imaging} |
gdcm | 17 | {covid-19,imaging} |
- minc-tools | 17 | {imaging} |
- invesalius | 16 | {imaging} |
- gnumed-server | 14 | {practice,covid-19} |
- plastimatch | 14 | {imaging} |
- gdcm | 13 | {imaging-dev} |
- pixelmed | 13 | {imaging} |
+ gnumed-server | 15 | {covid-19,practice} |
+ invesalius | 15 | {imaging} |
+ plastimatch | 15 | {imaging} |
+ gdcm | 12 | {imaging-dev} |
+ ngs-sdk | 12 | {bio-dev} |
+ pixelmed | 12 | {imaging} |
vtk-dicom | 12 | {imaging} |
- ngs-sdk | 11 | {bio-dev} |
+ mia | 11 | {imaging} |
openslide | 11 | {imaging} |
adun.app | 10 | {bio} |
- mia | 10 | {imaging} |
+ jebl2 | 10 | {bio-dev} |
nifti2dicom | 10 | {imaging} |
- jebl2 | 9 | {bio-dev} |
- king | 9 | {imaging,typesetting} |
- multiqc | 9 | {bio,covid-19} |
- orthanc-webviewer | 9 | {imaging} |
+ orthanc-webviewer | 10 | {imaging} |
+ king | 9 | {typesetting,imaging} |
+ biojava-live | 8 | {bio-dev} |
insighttoolkit4 | 8 | {imaging-dev} |
jellyfish1 | 8 | {bio} |
melting | 8 | {bio,cloud} |
- biojava-live | 7 | {bio-dev} |
- elastix | 7 | {imaging} |
- anfo | 6 | {cloud,bio} |
- beast-mcmc | 6 | {bio-phylogeny,bio} |
+ ea-utils | 7 | {bio} |
+ phast | 7 | {bio} |
+ anfo | 6 | {bio,cloud} |
+ beast-mcmc | 6 | {bio,bio-phylogeny} |
+ bio-tradis | 6 | {bio,bio-dev} |
+ bitseq | 6 | {bio} |
dicompyler | 6 | {oncology} |
- ea-utils | 6 | {bio} |
+ ecopcr | 6 | {bio} |
+ elastix | 6 | {imaging} |
+ embassy-domainatrix | 6 | {bio,cloud} |
+ lagan | 6 | {bio} |
+ libncl | 6 | {bio} |
libsbml | 6 | {bio-dev} |
ngs-sdk | 6 | {bio-dev} |
- orthanc-dicomweb | 6 | {covid-19,imaging} |
- phast | 6 | {bio} |
+ obitools | 6 | {bio} |
+ orthanc-dicomweb | 6 | {imaging,covid-19} |
+ perm | 6 | {cloud,bio} |
quorum | 6 | {bio} |
- treeview | 6 | {bio,bio-phylogeny} |
+ treeview | 6 | {bio-phylogeny,bio} |
arden | 5 | {bio,cloud} |
bart-view | 5 | {imaging} |
- bio-tradis | 5 | {bio,bio-dev} |
- bitseq | 5 | {bio} |
- ecopcr | 5 | {bio} |
- embassy-domainatrix | 5 | {cloud,bio} |
- embassy-domalign | 5 | {bio,cloud} |
- embassy-domsearch | 5 | {cloud,bio} |
- lagan | 5 | {bio} |
+ clonalorigin | 5 | {bio} |
+ embassy-domalign | 5 | {cloud,bio} |
+ embassy-domsearch | 5 | {bio,cloud} |
lamarc | 5 | {bio} |
libminc | 5 | {imaging-dev} |
- libncl | 5 | {bio} |
librg-utils-perl | 5 | {bio} |
- ngs-sdk | 5 | {bio-dev} |
- obitools | 5 | {bio} |
- perm | 5 | {cloud,bio} |
+ mauve-aligner | 5 | {bio} |
phyutility | 5 | {bio,cloud} |
- prime-phylo | 5 | {bio,cloud} |
+ prime-phylo | 5 | {cloud,bio} |
pymia | 5 | {imaging-dev} |
runcircos-gui | 5 | {bio} |
saint | 5 | {bio} |
- salmon | 5 | {bio,covid-19} |
+ salmid | 5 | {bio} |
+ salmon | 5 | {covid-19,bio} |
sibsim4 | 5 | {bio,cloud} |
soapsnp | 5 | {bio} |
spread-phy | 5 | {bio,bio-phylogeny} |
+ stacks | 5 | {bio} |
assemblytics | 4 | {bio} |
brig | 4 | {bio} |
- busco | 4 | {covid-19,bio} |
+ busco | 4 | {bio,covid-19} |
canu | 4 | {bio} |
- clonalframeml | 4 | {covid-19,bio} |
- clonalorigin | 4 | {bio} |
+ clonalframeml | 4 | {bio,covid-19} |
estscan | 4 | {bio} |
fsm-lite | 4 | {bio} |
getdata | 4 | {bio} |
ghmm | 4 | {bio} |
hinge | 4 | {bio} |
ipig | 4 | {bio} |
- jmodeltest | 4 | {bio,bio-phylogeny} |
+ jmodeltest | 4 | {bio-phylogeny,bio} |
libdivsufsort | 4 | {bio-dev} |
libpal-java | 4 | {bio-dev} |
- mauve-aligner | 4 | {bio} |
openslide | 4 | {imaging-dev} |
- paraclu | 4 | {bio,cloud} |
- proalign | 4 | {bio-phylogeny,bio} |
+ paraclu | 4 | {cloud,bio} |
+ proalign | 4 | {bio,bio-phylogeny} |
pscan-chip | 4 | {bio} |
- rtax | 4 | {cloud,bio} |
- salmid | 4 | {bio} |
+ qcumber | 4 | {bio} |
+ rdp-alignment | 4 | {bio} |
+ rtax | 4 | {bio,cloud} |
samblaster | 4 | {bio,covid-19} |
seqsero | 4 | {bio} |
soapaligner | 4 | {bio} |
- stacks | 4 | {bio} |
staden | 4 | {bio} |
+ surankco | 4 | {bio} |
+ tracetuner | 4 | {bio} |
+ tvc | 4 | {bio} |
yaha | 4 | {bio} |
zalign | 4 | {bio,cloud} |
atropos | 3 | {bio} |
biomaj3-cli | 3 | {cloud} |
blasr | 3 | {bio,bio-ngs} |
- cufflinks | 3 | {bio,cloud} |
- delly | 3 | {covid-19,bio} |
+ delly | 3 | {bio,covid-19} |
fastml | 3 | {bio} |
gatb-core | 3 | {bio} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
@@ -113,21 +115,17 @@ Last-Update: Sat, 27 Feb 2021 01:42:03 +0000
orthanc-postgresql | 3 | {imaging} |
piler | 3 | {bio} |
placnet | 3 | {bio} |
- qcumber | 3 | {bio} |
rambo-k | 3 | {bio} |
- rdp-alignment | 3 | {bio} |
rdp-classifier | 3 | {bio} |
sga | 3 | {bio} |
sight | 3 | {imaging} |
spaced | 3 | {bio} |
sprai | 3 | {bio} |
suitename | 3 | {bio} |
- surankco | 3 | {bio} |
- tracetuner | 3 | {bio} |
- tvc | 3 | {bio} |
bamkit | 2 | {covid-19,bio} |
blimps | 2 | {bio} |
cat-bat | 2 | {bio,covid-19} |
+ cufflinks | 2 | {cloud,bio} |
kmerresistance | 2 | {bio} |
logol | 2 | {bio} |
nanosv | 2 | {covid-19,bio} |
@@ -138,10 +136,10 @@ Last-Update: Sat, 27 Feb 2021 01:42:03 +0000
sambamba | 2 | {bio} |
sift | 2 | {bio} |
skesa | 2 | {bio} |
- spaln | 2 | {bio,covid-19} |
+ spaln | 2 | {covid-19,bio} |
trace2dbest | 2 | {bio} |
varscan | 2 | {bio,covid-19} |
- acedb | 1 | {bio,cloud} |
+ acedb | 1 | {cloud,bio} |
bbmap | 1 | {bio,covid-19} |
bustools | 1 | {covid-19,bio} |
ctn | 1 | {imaging-dev} |
@@ -158,19 +156,19 @@ Last-Update: Sat, 27 Feb 2021 01:42:03 +0000
orthanc-gdcm | 1 | {imaging} |
papyrus | 1 | {imaging-dev} |
parallel-fastq-dump | 1 | {covid-19} |
- pigx-rnaseq | 1 | {bio,covid-19} |
+ pigx-rnaseq | 1 | {covid-19,bio} |
pilercr | 1 | {bio} |
pique | 1 | {bio} |
plasmidseeker | 1 | {bio} |
- pplacer | 1 | {covid-19,bio-phylogeny,bio} |
+ pplacer | 1 | {bio,covid-19,bio-phylogeny} |
python-bcbio-gff | 1 | {bio-dev} |
samtools-legacy | 1 | {bio-dev} |
segemehl | 1 | {bio} |
skewer | 1 | {bio} |
srf | 1 | {bio-dev} |
svim | 1 | {bio} |
- thesias | 1 | {bio,covid-19} |
- tophat-recondition | 1 | {covid-19,bio} |
+ thesias | 1 | {covid-19,bio} |
+ tophat-recondition | 1 | {bio,covid-19} |
varna | 1 | {bio} |
yanagiba | 1 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
@@ -182,7 +180,7 @@ Last-Update: Sat, 27 Feb 2021 01:42:03 +0000
eegdev | 0 | {imaging-dev} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
- htscodecs | 0 | {covid-19,bio-dev} |
+ htscodecs | 0 | {bio-dev,covid-19} |
intake | 0 | {bio-dev,bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -202,7 +200,7 @@ Last-Update: Sat, 27 Feb 2021 01:42:03 +0000
libhmsbeagle | 0 | {bio-dev} |
libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {bio-dev,covid-19} |
+ libmaus2 | 0 | {covid-19,bio-dev} |
libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
libncl | 0 | {bio-dev} |
@@ -215,16 +213,16 @@ Last-Update: Sat, 27 Feb 2021 01:42:03 +0000
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {covid-19,bio-dev} |
+ milib | 0 | {bio-dev,covid-19} |
mssstest | 0 | {tools} |
nifticlib | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- plasmidid | 0 | {bio,covid-19} |
+ plasmidid | 0 | {covid-19,bio} |
python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
- q2-sample-classifier | 0 | {bio-dev,bio} |
+ q2-sample-classifier | 0 | {bio,bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
@@ -233,9 +231,9 @@ Last-Update: Sat, 27 Feb 2021 01:42:03 +0000
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
smrtanalysis | 0 | {covid-19,bio} |
- vienna-rna | 0 | {covid-19,bio} |
+ vienna-rna | 0 | {bio,covid-19} |
vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
orthanc-python | -1 | {covid-19} |
-(267 rows)
+(265 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/3c4f6c4000353b1a59f55016ad3438c7aba1e5d7
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/3c4f6c4000353b1a59f55016ad3438c7aba1e5d7
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